PRJNA438478: RNAseq of wild type zebrafish germline
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
otx1 | dr11_v1_chr17_+_24318753_24318753 | 0.94 | 7.8e-09 | Click! |
crx | dr11_v1_chr5_+_36932718_36932718 | -0.73 | 5.9e-04 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr11_-_1550709 Show fit | 4.09 |
ENSDART00000110097
|
si:ch73-303b9.1 |
|
chr13_+_8840772 Show fit | 3.93 |
ENSDART00000059321
|
epithelial cell adhesion molecule |
|
chr17_-_45125537 Show fit | 3.82 |
ENSDART00000113552
|
zgc:163014 |
|
chr10_-_42898220 Show fit | 3.27 |
ENSDART00000099270
|
|
|
chr16_-_46579936 Show fit | 2.86 |
ENSDART00000166143
ENSDART00000127212 |
si:dkey-152b24.6 |
|
chr19_+_42898239 Show fit | 2.77 |
ENSDART00000051724
|
cAMP-regulated phosphoprotein, 21 |
|
chr13_-_36844945 Show fit | 2.66 |
ENSDART00000129562
ENSDART00000150899 |
ninein (GSK3B interacting protein) |
|
chr22_+_25453334 Show fit | 2.34 |
ENSDART00000123962
|
si:ch211-12h2.6 |
|
chr14_+_30340251 Show fit | 2.32 |
ENSDART00000148448
|
microtubule associated tumor suppressor 1a |
|
chr6_+_37655078 Show fit | 2.30 |
ENSDART00000122199
ENSDART00000065127 |
cytoplasmic FMR1 interacting protein 1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.9 | GO:0048920 | posterior lateral line neuromast primordium migration(GO:0048920) |
0.0 | 3.2 | GO:0016197 | endosomal transport(GO:0016197) |
0.5 | 2.7 | GO:0034454 | microtubule anchoring at centrosome(GO:0034454) |
0.1 | 2.4 | GO:0030259 | lipid glycosylation(GO:0030259) |
0.6 | 2.3 | GO:0099563 | modification of synaptic structure(GO:0099563) |
0.1 | 2.2 | GO:0002183 | cytoplasmic translational initiation(GO:0002183) |
0.0 | 2.2 | GO:0006694 | steroid biosynthetic process(GO:0006694) |
0.0 | 2.1 | GO:0051016 | barbed-end actin filament capping(GO:0051016) |
0.1 | 1.8 | GO:0008078 | mesodermal cell migration(GO:0008078) |
0.0 | 1.6 | GO:0007605 | sensory perception of sound(GO:0007605) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.4 | GO:0016323 | basolateral plasma membrane(GO:0016323) |
0.2 | 2.7 | GO:0097431 | mitotic spindle pole(GO:0097431) |
0.2 | 2.3 | GO:0031209 | SCAR complex(GO:0031209) |
0.0 | 1.8 | GO:0070160 | bicellular tight junction(GO:0005923) occluding junction(GO:0070160) |
0.2 | 1.2 | GO:0034448 | EGO complex(GO:0034448) Gtr1-Gtr2 GTPase complex(GO:1990131) |
0.2 | 1.2 | GO:0034518 | RNA cap binding complex(GO:0034518) |
0.0 | 1.2 | GO:0000932 | cytoplasmic mRNA processing body(GO:0000932) |
0.0 | 1.2 | GO:0030136 | clathrin-coated vesicle(GO:0030136) |
0.0 | 1.2 | GO:0005741 | mitochondrial outer membrane(GO:0005741) |
0.0 | 1.1 | GO:0000314 | organellar small ribosomal subunit(GO:0000314) mitochondrial small ribosomal subunit(GO:0005763) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 5.0 | GO:0030246 | carbohydrate binding(GO:0030246) |
0.0 | 4.0 | GO:0003724 | RNA helicase activity(GO:0003724) |
0.2 | 3.5 | GO:0000340 | RNA 7-methylguanosine cap binding(GO:0000340) |
0.0 | 3.3 | GO:0060090 | binding, bridging(GO:0060090) |
0.0 | 2.5 | GO:0008081 | phosphoric diester hydrolase activity(GO:0008081) |
0.2 | 2.2 | GO:0003854 | 3-beta-hydroxy-delta5-steroid dehydrogenase activity(GO:0003854) |
0.4 | 1.8 | GO:0051059 | NF-kappaB binding(GO:0051059) |
0.1 | 1.8 | GO:0008301 | DNA binding, bending(GO:0008301) |
0.4 | 1.5 | GO:0000033 | alpha-1,3-mannosyltransferase activity(GO:0000033) |
0.2 | 1.5 | GO:0010340 | carboxyl-O-methyltransferase activity(GO:0010340) protein carboxyl O-methyltransferase activity(GO:0051998) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.8 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
0.0 | 1.2 | PID CERAMIDE PATHWAY | Ceramide signaling pathway |
0.0 | 1.1 | PID TRAIL PATHWAY | TRAIL signaling pathway |
0.1 | 1.0 | PID RANBP2 PATHWAY | Sumoylation by RanBP2 regulates transcriptional repression |
0.0 | 0.9 | PID SMAD2 3NUCLEAR PATHWAY | Regulation of nuclear SMAD2/3 signaling |
0.0 | 0.8 | PID RETINOIC ACID PATHWAY | Retinoic acid receptors-mediated signaling |
0.0 | 0.8 | PID INSULIN GLUCOSE PATHWAY | Insulin-mediated glucose transport |
0.0 | 0.4 | PID P38 GAMMA DELTA PATHWAY | Signaling mediated by p38-gamma and p38-delta |
0.0 | 0.4 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.0 | 0.3 | PID EPHA2 FWD PATHWAY | EPHA2 forward signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 2.2 | REACTOME ANDROGEN BIOSYNTHESIS | Genes involved in Androgen biosynthesis |
0.1 | 1.7 | REACTOME SMAD2 SMAD3 SMAD4 HETEROTRIMER REGULATES TRANSCRIPTION | Genes involved in SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription |
0.0 | 1.5 | REACTOME BIOSYNTHESIS OF THE N GLYCAN PRECURSOR DOLICHOL LIPID LINKED OLIGOSACCHARIDE LLO AND TRANSFER TO A NASCENT PROTEIN | Genes involved in Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein |
0.1 | 1.3 | REACTOME SYNTHESIS OF GLYCOSYLPHOSPHATIDYLINOSITOL GPI | Genes involved in Synthesis of glycosylphosphatidylinositol (GPI) |
0.1 | 1.2 | REACTOME SLBP DEPENDENT PROCESSING OF REPLICATION DEPENDENT HISTONE PRE MRNAS | Genes involved in SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs |
0.0 | 1.0 | REACTOME NOTCH1 INTRACELLULAR DOMAIN REGULATES TRANSCRIPTION | Genes involved in NOTCH1 Intracellular Domain Regulates Transcription |
0.1 | 0.9 | REACTOME TRAFFICKING AND PROCESSING OF ENDOSOMAL TLR | Genes involved in Trafficking and processing of endosomal TLR |
0.1 | 0.9 | REACTOME GLUTATHIONE CONJUGATION | Genes involved in Glutathione conjugation |
0.1 | 0.9 | REACTOME CELL EXTRACELLULAR MATRIX INTERACTIONS | Genes involved in Cell-extracellular matrix interactions |
0.2 | 0.8 | REACTOME ENDOSOMAL VACUOLAR PATHWAY | Genes involved in Endosomal/Vacuolar pathway |