PRJNA438478: RNAseq of wild type zebrafish germline
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
jdp2b | dr11_v1_chr20_+_46586678_46586692 | -0.84 | 1.6e-05 | Click! |
atf3 | dr11_v1_chr20_+_37794633_37794633 | 0.58 | 1.1e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr14_+_8947282 Show fit | 5.88 |
ENSDART00000047993
|
ribosomal protein S6 kinase a, like |
|
chr2_+_35603637 Show fit | 5.72 |
ENSDART00000147278
|
polo-like kinase 3 (Drosophila) |
|
chr17_+_25187226 Show fit | 4.71 |
ENSDART00000148431
|
CLN8, transmembrane ER and ERGIC protein |
|
chr8_+_52442622 Show fit | 4.64 |
ENSDART00000012758
|
zgc:77112 |
|
chr22_-_817479 Show fit | 4.48 |
ENSDART00000123487
|
zgc:153675 |
|
chr8_+_52442785 Show fit | 4.22 |
ENSDART00000189958
|
zgc:77112 |
|
chr18_+_45526585 Show fit | 4.05 |
ENSDART00000138511
|
kinesin family member C3 |
|
chr6_+_112579 Show fit | 4.01 |
ENSDART00000034505
|
adaptor-related protein complex 1, mu 2 subunit |
|
chr2_-_17115256 Show fit | 3.82 |
ENSDART00000190488
|
PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae) |
|
chr5_+_26213874 Show fit | 3.75 |
ENSDART00000193816
ENSDART00000098514 |
occludin b |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 10.3 | GO:0032885 | regulation of polysaccharide biosynthetic process(GO:0032885) |
0.6 | 7.2 | GO:0000002 | mitochondrial genome maintenance(GO:0000002) |
0.1 | 6.3 | GO:0010952 | positive regulation of endopeptidase activity(GO:0010950) positive regulation of peptidase activity(GO:0010952) |
0.1 | 6.0 | GO:0008285 | negative regulation of cell proliferation(GO:0008285) |
1.2 | 5.9 | GO:0006978 | DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator(GO:0006978) DNA damage response, signal transduction resulting in transcription(GO:0042772) |
0.2 | 5.9 | GO:0030038 | contractile actin filament bundle assembly(GO:0030038) stress fiber assembly(GO:0043149) |
0.1 | 5.8 | GO:0051028 | mRNA transport(GO:0051028) |
1.4 | 5.7 | GO:0048308 | organelle inheritance(GO:0048308) Golgi inheritance(GO:0048313) |
0.3 | 5.6 | GO:1901222 | regulation of NIK/NF-kappaB signaling(GO:1901222) |
0.1 | 5.5 | GO:0006400 | tRNA modification(GO:0006400) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 11.9 | GO:0005783 | endoplasmic reticulum(GO:0005783) |
0.5 | 8.9 | GO:0000164 | protein phosphatase type 1 complex(GO:0000164) |
0.2 | 7.9 | GO:0005657 | replication fork(GO:0005657) |
0.1 | 5.9 | GO:0032432 | actin filament bundle(GO:0032432) |
0.1 | 5.6 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
1.3 | 5.0 | GO:0008537 | proteasome activator complex(GO:0008537) |
0.0 | 4.9 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
0.2 | 4.8 | GO:0070971 | endoplasmic reticulum exit site(GO:0070971) |
0.0 | 4.7 | GO:0070160 | bicellular tight junction(GO:0005923) occluding junction(GO:0070160) |
0.6 | 4.5 | GO:0061700 | GATOR2 complex(GO:0061700) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 12.7 | GO:0005085 | guanyl-nucleotide exchange factor activity(GO:0005085) |
0.6 | 8.9 | GO:2001069 | glycogen binding(GO:2001069) |
1.4 | 7.2 | GO:0043139 | 5'-3' DNA helicase activity(GO:0043139) |
0.6 | 7.2 | GO:0004711 | ribosomal protein S6 kinase activity(GO:0004711) |
0.0 | 7.2 | GO:0000989 | transcription factor activity, transcription factor binding(GO:0000989) transcription cofactor activity(GO:0003712) |
0.3 | 5.9 | GO:0035615 | clathrin adaptor activity(GO:0035615) endocytic adaptor activity(GO:0098748) |
0.2 | 5.4 | GO:0017056 | structural constituent of nuclear pore(GO:0017056) |
1.3 | 5.2 | GO:0004419 | hydroxymethylglutaryl-CoA lyase activity(GO:0004419) |
0.8 | 5.0 | GO:0061133 | endopeptidase activator activity(GO:0061133) |
0.0 | 4.8 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 11.6 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
0.2 | 7.3 | PID AURORA B PATHWAY | Aurora B signaling |
0.2 | 5.9 | PID ECADHERIN STABILIZATION PATHWAY | Stabilization and expansion of the E-cadherin adherens junction |
0.1 | 3.7 | PID FAK PATHWAY | Signaling events mediated by focal adhesion kinase |
0.1 | 3.6 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
0.1 | 3.2 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
0.1 | 2.9 | PID DNA PK PATHWAY | DNA-PK pathway in nonhomologous end joining |
0.1 | 2.8 | PID KIT PATHWAY | Signaling events mediated by Stem cell factor receptor (c-Kit) |
0.2 | 2.5 | SA REG CASCADE OF CYCLIN EXPR | Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases. |
0.1 | 2.5 | PID PI3KCI PATHWAY | Class I PI3K signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 6.2 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
0.4 | 5.1 | REACTOME NEF MEDIATED DOWNREGULATION OF MHC CLASS I COMPLEX CELL SURFACE EXPRESSION | Genes involved in Nef mediated downregulation of MHC class I complex cell surface expression |
0.2 | 4.5 | REACTOME BRANCHED CHAIN AMINO ACID CATABOLISM | Genes involved in Branched-chain amino acid catabolism |
0.3 | 4.2 | REACTOME DEADENYLATION OF MRNA | Genes involved in Deadenylation of mRNA |
0.2 | 4.0 | REACTOME RNA POL III TRANSCRIPTION TERMINATION | Genes involved in RNA Polymerase III Transcription Termination |
0.3 | 3.3 | REACTOME ROLE OF DCC IN REGULATING APOPTOSIS | Genes involved in Role of DCC in regulating apoptosis |
0.1 | 3.3 | REACTOME TRANSPORT OF RIBONUCLEOPROTEINS INTO THE HOST NUCLEUS | Genes involved in Transport of Ribonucleoproteins into the Host Nucleus |
0.1 | 3.3 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
0.0 | 3.1 | REACTOME TRANSPORT OF INORGANIC CATIONS ANIONS AND AMINO ACIDS OLIGOPEPTIDES | Genes involved in Transport of inorganic cations/anions and amino acids/oligopeptides |
0.2 | 2.9 | REACTOME POL SWITCHING | Genes involved in Polymerase switching |