PRJNA438478: RNAseq of wild type zebrafish germline
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
atf1 | dr11_v1_chr6_-_39521832_39521832 | 0.93 | 1.9e-08 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr2_+_35603637 Show fit | 6.66 |
ENSDART00000147278
|
polo-like kinase 3 (Drosophila) |
|
chr13_+_8840772 Show fit | 4.93 |
ENSDART00000059321
|
epithelial cell adhesion molecule |
|
chr6_+_112579 Show fit | 4.68 |
ENSDART00000034505
|
adaptor-related protein complex 1, mu 2 subunit |
|
chr19_+_14454306 Show fit | 4.28 |
ENSDART00000161965
|
zinc finger, DHHC-type containing 18b |
|
chr2_+_12255568 Show fit | 4.13 |
ENSDART00000184164
ENSDART00000013454 |
phosphoribosyl transferase domain containing 1 |
|
chr17_+_25187226 Show fit | 3.97 |
ENSDART00000148431
|
CLN8, transmembrane ER and ERGIC protein |
|
chr7_+_38808027 Show fit | 3.73 |
ENSDART00000052323
|
harbinger transposase derived 1 |
|
chr10_-_34915886 Show fit | 3.71 |
ENSDART00000141201
ENSDART00000002166 |
cyclin A1 |
|
chr7_-_51773166 Show fit | 3.68 |
ENSDART00000054591
|
bone morphogenetic protein 15 |
|
chr12_-_17863467 Show fit | 3.67 |
ENSDART00000042006
|
BAI1-associated protein 2-like 1a |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 10.5 | GO:0008285 | negative regulation of cell proliferation(GO:0008285) |
0.2 | 8.2 | GO:0000079 | regulation of cyclin-dependent protein serine/threonine kinase activity(GO:0000079) regulation of cyclin-dependent protein kinase activity(GO:1904029) |
1.7 | 6.7 | GO:0048313 | organelle inheritance(GO:0048308) Golgi inheritance(GO:0048313) |
1.6 | 6.5 | GO:0006404 | RNA import into nucleus(GO:0006404) snRNA import into nucleus(GO:0061015) |
0.1 | 6.1 | GO:0008016 | regulation of heart contraction(GO:0008016) |
0.7 | 6.0 | GO:2000251 | positive regulation of actin cytoskeleton reorganization(GO:2000251) |
0.1 | 6.0 | GO:0006892 | post-Golgi vesicle-mediated transport(GO:0006892) |
0.2 | 5.9 | GO:0018230 | peptidyl-L-cysteine S-palmitoylation(GO:0018230) peptidyl-S-diacylglycerol-L-cysteine biosynthetic process from peptidyl-cysteine(GO:0018231) |
1.3 | 5.4 | GO:0046951 | ketone body biosynthetic process(GO:0046951) |
0.3 | 4.7 | GO:0035970 | peptidyl-threonine dephosphorylation(GO:0035970) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 9.3 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
0.0 | 7.9 | GO:0005794 | Golgi apparatus(GO:0005794) |
0.1 | 7.5 | GO:0032432 | actin filament bundle(GO:0032432) |
0.0 | 7.3 | GO:0048471 | perinuclear region of cytoplasm(GO:0048471) |
0.2 | 6.6 | GO:0030131 | clathrin adaptor complex(GO:0030131) |
0.1 | 6.2 | GO:0000922 | spindle pole(GO:0000922) |
0.0 | 6.1 | GO:0005923 | bicellular tight junction(GO:0005923) occluding junction(GO:0070160) |
0.0 | 5.7 | GO:0005730 | nucleolus(GO:0005730) |
0.0 | 4.8 | GO:0005654 | nucleoplasm(GO:0005654) |
0.0 | 4.7 | GO:0005765 | lysosomal membrane(GO:0005765) lytic vacuole membrane(GO:0098852) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 8.9 | GO:0016538 | cyclin-dependent protein serine/threonine kinase regulator activity(GO:0016538) |
0.4 | 7.0 | GO:0061608 | nuclear import signal receptor activity(GO:0061608) |
0.3 | 6.6 | GO:0035615 | clathrin adaptor activity(GO:0035615) endocytic adaptor activity(GO:0098748) |
0.0 | 6.3 | GO:0051015 | actin filament binding(GO:0051015) |
0.0 | 5.8 | GO:0005085 | guanyl-nucleotide exchange factor activity(GO:0005085) |
1.3 | 5.4 | GO:0004419 | hydroxymethylglutaryl-CoA lyase activity(GO:0004419) |
0.1 | 5.4 | GO:0043130 | ubiquitin binding(GO:0043130) |
0.3 | 4.7 | GO:0008330 | protein tyrosine/threonine phosphatase activity(GO:0008330) |
0.3 | 4.4 | GO:0008553 | hydrogen-exporting ATPase activity, phosphorylative mechanism(GO:0008553) |
0.3 | 4.2 | GO:0032041 | histone deacetylase activity (H3-K14 specific)(GO:0031078) NAD-dependent histone deacetylase activity (H3-K14 specific)(GO:0032041) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 13.0 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
0.5 | 7.5 | SA REG CASCADE OF CYCLIN EXPR | Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases. |
0.0 | 7.3 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
0.2 | 7.2 | SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES | Genes related to the insulin receptor pathway |
0.1 | 3.5 | PID LYSOPHOSPHOLIPID PATHWAY | LPA receptor mediated events |
0.1 | 3.4 | PID HDAC CLASSI PATHWAY | Signaling events mediated by HDAC Class I |
0.1 | 2.8 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
0.2 | 2.6 | PID TCR RAS PATHWAY | Ras signaling in the CD4+ TCR pathway |
0.2 | 2.2 | PID ERBB NETWORK PATHWAY | ErbB receptor signaling network |
0.2 | 2.2 | PID INTEGRIN5 PATHWAY | Beta5 beta6 beta7 and beta8 integrin cell surface interactions |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 8.8 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |
0.1 | 7.5 | REACTOME METABOLISM OF NON CODING RNA | Genes involved in Metabolism of non-coding RNA |
0.1 | 6.4 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
0.5 | 5.9 | REACTOME NEF MEDIATED DOWNREGULATION OF MHC CLASS I COMPLEX CELL SURFACE EXPRESSION | Genes involved in Nef mediated downregulation of MHC class I complex cell surface expression |
0.2 | 5.5 | REACTOME MRNA 3 END PROCESSING | Genes involved in mRNA 3'-end processing |
0.1 | 4.7 | REACTOME NOTCH1 INTRACELLULAR DOMAIN REGULATES TRANSCRIPTION | Genes involved in NOTCH1 Intracellular Domain Regulates Transcription |
0.0 | 4.5 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
0.3 | 4.1 | REACTOME DEADENYLATION OF MRNA | Genes involved in Deadenylation of mRNA |
0.3 | 3.9 | REACTOME METABOLISM OF POLYAMINES | Genes involved in Metabolism of polyamines |
0.3 | 3.2 | REACTOME ROLE OF DCC IN REGULATING APOPTOSIS | Genes involved in Role of DCC in regulating apoptosis |