PRJNA438478: RNAseq of wild type zebrafish germline
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
nkx6.3
|
ENSDARG00000060529 | NK6 homeobox 3 |
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| nkx6.3 | dr11_v1_chr8_+_38415374_38415374 | 0.45 | 5.8e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr18_-_17485419 | 0.54 |
ENSDART00000018764
|
foxl1
|
forkhead box L1 |
| chr3_-_60175470 | 0.52 |
ENSDART00000156597
|
si:ch73-364h19.1
|
si:ch73-364h19.1 |
| chr17_+_15433518 | 0.51 |
ENSDART00000026180
|
fabp7a
|
fatty acid binding protein 7, brain, a |
| chr2_-_9818640 | 0.50 |
ENSDART00000139499
ENSDART00000165548 ENSDART00000012442 ENSDART00000046587 |
ap2m1b
|
adaptor-related protein complex 2, mu 1 subunit, b |
| chr17_+_15433671 | 0.45 |
ENSDART00000149568
|
fabp7a
|
fatty acid binding protein 7, brain, a |
| chr11_-_2838699 | 0.44 |
ENSDART00000066189
|
lhfpl5a
|
LHFPL tetraspan subfamily member 5a |
| chr14_+_14662116 | 0.42 |
ENSDART00000161693
|
cetn2
|
centrin, EF-hand protein, 2 |
| chr12_-_10409961 | 0.33 |
ENSDART00000149521
ENSDART00000052001 |
eef2k
|
eukaryotic elongation factor 2 kinase |
| chr11_-_2478374 | 0.33 |
ENSDART00000173205
|
si:ch73-267c23.10
|
si:ch73-267c23.10 |
| chr16_+_46111849 | 0.32 |
ENSDART00000172232
|
sv2a
|
synaptic vesicle glycoprotein 2A |
| chr16_-_12173554 | 0.30 |
ENSDART00000110567
ENSDART00000155935 |
clstn3
|
calsyntenin 3 |
| chr9_-_9415000 | 0.27 |
ENSDART00000146210
|
si:ch211-214p13.9
|
si:ch211-214p13.9 |
| chr6_-_37469775 | 0.27 |
ENSDART00000156546
|
plcxd1
|
phosphatidylinositol-specific phospholipase C, X domain containing 1 |
| chr20_-_9095105 | 0.26 |
ENSDART00000140792
|
oma1
|
OMA1 zinc metallopeptidase |
| chr16_-_12173399 | 0.26 |
ENSDART00000142574
|
clstn3
|
calsyntenin 3 |
| chr25_-_8660726 | 0.22 |
ENSDART00000168010
ENSDART00000171709 ENSDART00000163426 |
unc45a
|
unc-45 myosin chaperone A |
| chr3_+_45687266 | 0.21 |
ENSDART00000131652
|
gpr146
|
G protein-coupled receptor 146 |
| chr21_+_28445052 | 0.21 |
ENSDART00000077871
|
pygma
|
phosphorylase, glycogen, muscle A |
| chr9_-_31278048 | 0.17 |
ENSDART00000022204
|
zic5
|
zic family member 5 (odd-paired homolog, Drosophila) |
| chr23_-_16485190 | 0.16 |
ENSDART00000155038
|
si:dkeyp-100a5.4
|
si:dkeyp-100a5.4 |
| chr3_-_21010979 | 0.16 |
ENSDART00000109578
|
fam117aa
|
family with sequence similarity 117, member Aa |
| chr2_-_55298075 | 0.12 |
ENSDART00000186404
ENSDART00000149062 |
rab8a
|
RAB8A, member RAS oncogene family |
| chr25_+_24291156 | 0.12 |
ENSDART00000083407
|
b4galnt4a
|
beta-1,4-N-acetyl-galactosaminyl transferase 4a |
| chr12_-_6880694 | 0.11 |
ENSDART00000171846
|
pcdh15b
|
protocadherin-related 15b |
| chr21_-_13123176 | 0.11 |
ENSDART00000144866
ENSDART00000024616 |
fam219aa
|
family with sequence similarity 219, member Aa |
| chr15_-_34668485 | 0.11 |
ENSDART00000186605
|
bag6
|
BCL2 associated athanogene 6 |
| chr19_+_1688727 | 0.11 |
ENSDART00000115136
ENSDART00000166744 |
dennd3a
|
DENN/MADD domain containing 3a |
| chr6_+_4033832 | 0.10 |
ENSDART00000159952
|
sema5bb
|
sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5Bb |
| chr2_-_1486023 | 0.09 |
ENSDART00000113774
|
si:ch211-188c16.1
|
si:ch211-188c16.1 |
| chr18_+_2228737 | 0.09 |
ENSDART00000165301
|
rab27a
|
RAB27A, member RAS oncogene family |
| chr2_+_2223837 | 0.07 |
ENSDART00000101038
ENSDART00000129354 |
tmie
|
transmembrane inner ear |
| chr13_+_22476742 | 0.07 |
ENSDART00000078759
ENSDART00000130101 ENSDART00000137220 ENSDART00000133065 ENSDART00000147348 |
ldb3a
|
LIM domain binding 3a |
| chr20_-_48485354 | 0.07 |
ENSDART00000124040
ENSDART00000148437 |
insm1a
|
insulinoma-associated 1a |
| chr23_-_35790235 | 0.07 |
ENSDART00000142369
ENSDART00000141141 ENSDART00000011004 |
mfsd5
|
major facilitator superfamily domain containing 5 |
| chr3_-_58798377 | 0.07 |
ENSDART00000161248
|
si:ch73-281f12.4
|
si:ch73-281f12.4 |
| chr20_-_40755614 | 0.06 |
ENSDART00000061247
|
cx32.3
|
connexin 32.3 |
| chr20_+_40457599 | 0.06 |
ENSDART00000017553
|
serinc1
|
serine incorporator 1 |
| chr6_-_16717878 | 0.05 |
ENSDART00000153552
|
nomo
|
nodal modulator |
| chr3_-_58798815 | 0.05 |
ENSDART00000082920
|
si:ch73-281f12.4
|
si:ch73-281f12.4 |
| chr5_+_34623107 | 0.05 |
ENSDART00000184126
|
enc1
|
ectodermal-neural cortex 1 |
| chr4_+_43522680 | 0.05 |
ENSDART00000182252
|
si:dkeyp-53e4.4
|
si:dkeyp-53e4.4 |
| chr8_+_8927870 | 0.04 |
ENSDART00000081985
|
pim2
|
Pim-2 proto-oncogene, serine/threonine kinase |
| chr21_+_43328685 | 0.03 |
ENSDART00000109620
ENSDART00000139668 |
sept8a
|
septin 8a |
| chr19_-_205104 | 0.03 |
ENSDART00000011890
|
zbtb22a
|
zinc finger and BTB domain containing 22a |
| chr6_-_12588044 | 0.02 |
ENSDART00000047896
|
slc15a1b
|
solute carrier family 15 (oligopeptide transporter), member 1b |
| chr6_+_54187643 | 0.01 |
ENSDART00000056830
|
pacsin1b
|
protein kinase C and casein kinase substrate in neurons 1b |
| chr16_-_22294265 | 0.01 |
ENSDART00000124718
|
aqp10a
|
aquaporin 10a |
| chr5_-_30620625 | 0.00 |
ENSDART00000098273
|
tcnl
|
transcobalamin like |
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.2 | GO:0052575 | carbohydrate localization(GO:0052575) carbohydrate storage(GO:0052576) |
| 0.1 | 0.6 | GO:0051965 | positive regulation of synapse assembly(GO:0051965) |
| 0.0 | 0.3 | GO:1990845 | adaptive thermogenesis(GO:1990845) |
| 0.0 | 0.1 | GO:0048210 | Golgi vesicle fusion to target membrane(GO:0048210) |
| 0.0 | 0.2 | GO:0033278 | cell proliferation in midbrain(GO:0033278) |
| 0.0 | 0.3 | GO:0061300 | cerebellum vasculature development(GO:0061300) |
| 0.0 | 0.4 | GO:0006658 | phosphatidylserine metabolic process(GO:0006658) |
| 0.0 | 0.5 | GO:0060122 | inner ear receptor stereocilium organization(GO:0060122) |
| 0.0 | 0.4 | GO:0007099 | centriole replication(GO:0007099) |
| 0.0 | 0.5 | GO:0035138 | pectoral fin morphogenesis(GO:0035138) |
| 0.0 | 0.3 | GO:0030183 | B cell differentiation(GO:0030183) |
| 0.0 | 0.1 | GO:1900145 | nodal signaling pathway involved in determination of left/right asymmetry(GO:0038107) regulation of nodal signaling pathway involved in determination of left/right asymmetry(GO:1900145) |
| 0.0 | 0.1 | GO:0060221 | retinal rod cell differentiation(GO:0060221) |
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.3 | GO:0019815 | B cell receptor complex(GO:0019815) |
| 0.0 | 0.5 | GO:0030122 | AP-2 adaptor complex(GO:0030122) |
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.0 | GO:0005504 | fatty acid binding(GO:0005504) |
| 0.0 | 0.2 | GO:0008184 | phosphorylase activity(GO:0004645) glycogen phosphorylase activity(GO:0008184) |
| 0.0 | 0.1 | GO:0033842 | N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity(GO:0033842) |
| 0.0 | 0.5 | GO:0098748 | clathrin adaptor activity(GO:0035615) endocytic adaptor activity(GO:0098748) |
| 0.0 | 0.2 | GO:0051879 | Hsp90 protein binding(GO:0051879) |
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.3 | PID P38 GAMMA DELTA PATHWAY | Signaling mediated by p38-gamma and p38-delta |
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.3 | REACTOME MTORC1 MEDIATED SIGNALLING | Genes involved in mTORC1-mediated signalling |