PRJNA207719: Tissue specific transcriptome profiling
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
tfe3b | dr11_v1_chr11_+_25504215_25504215 | -0.55 | 3.3e-01 | Click! |
tfe3a | dr11_v1_chr8_+_7778770_7778770 | -0.44 | 4.5e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr2_+_31665836 Show fit | 1.55 |
ENSDART00000135411
ENSDART00000143914 |
si:ch211-106h4.12 |
|
chr22_-_17677947 Show fit | 1.35 |
ENSDART00000139911
|
tight junction protein 3 |
|
chr5_-_29534748 Show fit | 1.32 |
ENSDART00000159587
|
|
|
chr20_-_17041025 Show fit | 1.24 |
ENSDART00000063764
|
si:dkey-5n18.1 |
|
chr16_-_45178430 Show fit | 1.22 |
ENSDART00000165186
|
si:dkey-33i11.9 |
|
chr3_-_16784280 Show fit | 1.19 |
ENSDART00000137108
ENSDART00000137276 |
si:dkey-30j10.5 |
|
chr9_-_56272465 Show fit | 1.07 |
ENSDART00000039235
|
lymphocyte cytosolic protein 1 (L-plastin) |
|
chr9_-_33063083 Show fit | 1.05 |
ENSDART00000048550
|
si:ch211-125e6.5 |
|
chr21_-_22673758 Show fit | 1.00 |
ENSDART00000164910
|
grass carp reovirus (GCRV)-induced gene 2i |
|
chr20_+_38257766 Show fit | 0.98 |
ENSDART00000147485
ENSDART00000149160 |
chemokine (C-C motif) ligand 38, duplicate 6 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.8 | GO:0000266 | mitochondrial fission(GO:0000266) |
0.0 | 1.7 | GO:0051607 | defense response to virus(GO:0051607) |
0.0 | 1.5 | GO:0048247 | lymphocyte chemotaxis(GO:0048247) |
0.2 | 1.4 | GO:0060017 | parathyroid gland development(GO:0060017) |
0.1 | 1.4 | GO:0030104 | water homeostasis(GO:0030104) |
0.4 | 1.3 | GO:1901994 | meiotic cell cycle phase transition(GO:0044771) metaphase/anaphase transition of meiotic cell cycle(GO:0044785) regulation of meiotic cell cycle phase transition(GO:1901993) negative regulation of meiotic cell cycle phase transition(GO:1901994) regulation of metaphase/anaphase transition of meiotic cell cycle(GO:1902102) negative regulation of metaphase/anaphase transition of meiotic cell cycle(GO:1902103) regulation of meiotic chromosome separation(GO:1905132) negative regulation of meiotic chromosome separation(GO:1905133) |
0.3 | 1.3 | GO:0006046 | N-acetylglucosamine catabolic process(GO:0006046) |
0.1 | 1.2 | GO:0000727 | double-strand break repair via break-induced replication(GO:0000727) |
0.1 | 1.2 | GO:0000028 | ribosomal small subunit assembly(GO:0000028) |
0.0 | 1.2 | GO:0030574 | collagen catabolic process(GO:0030574) multicellular organism catabolic process(GO:0044243) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.6 | GO:0070160 | bicellular tight junction(GO:0005923) occluding junction(GO:0070160) |
0.0 | 1.5 | GO:0000777 | condensed chromosome kinetochore(GO:0000777) |
0.1 | 1.3 | GO:0005664 | origin recognition complex(GO:0000808) nuclear origin of replication recognition complex(GO:0005664) |
0.4 | 1.2 | GO:0098556 | cytoplasmic side of rough endoplasmic reticulum membrane(GO:0098556) |
0.0 | 1.2 | GO:0032587 | ruffle membrane(GO:0032587) |
0.1 | 1.0 | GO:0031838 | haptoglobin-hemoglobin complex(GO:0031838) |
0.0 | 1.0 | GO:0030119 | AP-type membrane coat adaptor complex(GO:0030119) |
0.0 | 0.9 | GO:0032588 | trans-Golgi network membrane(GO:0032588) |
0.0 | 0.9 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
0.0 | 0.9 | GO:0005746 | mitochondrial respiratory chain(GO:0005746) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.3 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.0 | 2.4 | GO:0008009 | chemokine activity(GO:0008009) |
0.0 | 1.7 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
0.0 | 1.4 | GO:0003950 | NAD+ ADP-ribosyltransferase activity(GO:0003950) |
0.0 | 1.2 | GO:0016538 | cyclin-dependent protein serine/threonine kinase regulator activity(GO:0016538) |
0.0 | 1.2 | GO:0004867 | serine-type endopeptidase inhibitor activity(GO:0004867) |
0.1 | 1.0 | GO:0031720 | haptoglobin binding(GO:0031720) |
0.1 | 0.9 | GO:0004687 | myosin light chain kinase activity(GO:0004687) |
0.3 | 0.8 | GO:0048030 | disaccharide binding(GO:0048030) |
0.2 | 0.8 | GO:0017077 | oxidative phosphorylation uncoupler activity(GO:0017077) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.4 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.0 | 1.2 | PID PLK1 PATHWAY | PLK1 signaling events |
0.0 | 1.0 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.1 | 0.9 | PID INTEGRIN4 PATHWAY | Alpha6 beta4 integrin-ligand interactions |
0.1 | 0.9 | PID TCR CALCIUM PATHWAY | Calcium signaling in the CD4+ TCR pathway |
0.0 | 0.9 | ST GA13 PATHWAY | G alpha 13 Pathway |
0.0 | 0.8 | SA REG CASCADE OF CYCLIN EXPR | Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases. |
0.0 | 0.8 | PID TNF PATHWAY | TNF receptor signaling pathway |
0.1 | 0.6 | ST JAK STAT PATHWAY | Jak-STAT Pathway |
0.0 | 0.6 | PID AURORA B PATHWAY | Aurora B signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.1 | REACTOME PEPTIDE CHAIN ELONGATION | Genes involved in Peptide chain elongation |
0.1 | 1.5 | REACTOME E2F ENABLED INHIBITION OF PRE REPLICATION COMPLEX FORMATION | Genes involved in E2F-enabled inhibition of pre-replication complex formation |
0.0 | 1.1 | REACTOME RESPIRATORY ELECTRON TRANSPORT ATP SYNTHESIS BY CHEMIOSMOTIC COUPLING AND HEAT PRODUCTION BY UNCOUPLING PROTEINS | Genes involved in Respiratory electron transport, ATP synthesis by chemiosmotic coupling, and heat production by uncoupling proteins. |
0.0 | 1.1 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
0.0 | 1.0 | REACTOME DEPOSITION OF NEW CENPA CONTAINING NUCLEOSOMES AT THE CENTROMERE | Genes involved in Deposition of New CENPA-containing Nucleosomes at the Centromere |
0.0 | 0.9 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |
0.0 | 0.9 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |
0.0 | 0.8 | REACTOME CDK MEDIATED PHOSPHORYLATION AND REMOVAL OF CDC6 | Genes involved in CDK-mediated phosphorylation and removal of Cdc6 |
0.1 | 0.7 | REACTOME SYNTHESIS SECRETION AND INACTIVATION OF GLP1 | Genes involved in Synthesis, Secretion, and Inactivation of Glucagon-like Peptide-1 (GLP-1) |
0.1 | 0.7 | REACTOME NEF MEDIATED DOWNREGULATION OF MHC CLASS I COMPLEX CELL SURFACE EXPRESSION | Genes involved in Nef mediated downregulation of MHC class I complex cell surface expression |