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PRJNA207719: Tissue specific transcriptome profiling

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Results for six3a+six3b+six7_six1a+six2a+six2b+six5+six9_six1b

Z-value: 0.64

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Transcription factors associated with six3a+six3b+six7_six1a+six2a+six2b+six5+six9_six1b

Gene Symbol Gene ID Gene Info
ENSDARG00000054879 SIX homeobox 3b
ENSDARG00000058008 SIX homeobox 3a
ENSDARG00000070107 SIX homeobox 7
ENSDARG00000114971 SIX homeobox 3a
ENSDARG00000039304 SIX homeobox 1a
ENSDARG00000054878 SIX homeobox 2b
ENSDARG00000058004 SIX homeobox 2a
ENSDARG00000068406 SIX homeobox 5
ENSDARG00000068407 SIX homeobox 9
ENSDARG00000115214 SIX homeobox 2a
ENSDARG00000026473 SIX homeobox 1b

Activity-expression correlation:

Activity profile of six3a+six3b+six7_six1a+six2a+six2b+six5+six9_six1b motif

Sorted Z-values of six3a+six3b+six7_six1a+six2a+six2b+six5+six9_six1b motif

Promoter Log-likelihood Transcript Gene Gene Info
chr18_-_49283058 0.56 ENSDART00000076554
si:zfos-464b6.2
chr10_-_42898220 0.30 ENSDART00000099270

chr9_-_18911608 0.27 ENSDART00000138785
si:dkey-239h2.3
chr3_-_49815223 0.25 ENSDART00000181208
glucagon receptor a
chr19_-_20403845 0.23 ENSDART00000151265
ENSDART00000147911
ENSDART00000151356
deleted in azoospermia-like
chr10_+_42898103 0.21 ENSDART00000015872
zinc finger, CCHC domain containing 9
chr7_-_71486162 0.20 ENSDART00000045253
aconitase 1, soluble
chr8_-_26961779 0.20 ENSDART00000099214
solute carrier family 16 (monocarboxylate transporter), member 1b
chr21_-_27195256 0.20 ENSDART00000133152
ENSDART00000065401
zgc:110782
chr11_-_44194132 0.20 ENSDART00000182954
ENSDART00000111271

chr5_+_9377005 0.19 ENSDART00000124924
UDP glucuronosyltransferase 2 family, polypeptide A7
chr21_+_11385031 0.18 ENSDART00000040598
carboxyl ester lipase, tandem duplicate 2
chr2_-_27473645 0.16 ENSDART00000186152

chr10_+_35468978 0.16 ENSDART00000131984
pleckstrin homology-like domain, family B, member 2a
chr11_-_24016761 0.16 ENSDART00000153601
ENSDART00000067817
ENSDART00000170531
chitinase, acidic.3
chr5_-_12823876 0.16 ENSDART00000019461
purinergic receptor P2X, ligand-gated ion channel, 2
chr22_-_24967348 0.15 ENSDART00000153490
ENSDART00000084871
family with sequence similarity 20, member C like
chr11_+_3575963 0.15 ENSDART00000077305
si:dkey-33m11.8
chr21_-_26028205 0.15 ENSDART00000034875
stromal cell-derived factor 2
chr19_+_34230108 0.14 ENSDART00000141950
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12
chr3_-_21094437 0.14 ENSDART00000153739
ENSDART00000109790
nemo-like kinase, type 1
chr21_-_7940043 0.14 ENSDART00000099733
ENSDART00000136671
coagulation factor II (thrombin) receptor-like 1, tandem duplicate 1
chr17_-_6600899 0.14 ENSDART00000154074
ENSDART00000180912
si:ch211-189e2.2
chr16_-_46567136 0.14 ENSDART00000159180
si:dkey-152b24.7
chr16_-_46567344 0.14 ENSDART00000127721
si:dkey-152b24.7
chr17_-_2573021 0.13 ENSDART00000074181
zona pellucida glycoprotein 3, tandem duplicate 2
chr20_+_34502606 0.13 ENSDART00000139739
golgin, rab6-interacting
chr16_-_383664 0.12 ENSDART00000051693
iroquois homeobox 4a
chr12_+_13742778 0.12 ENSDART00000111401
ENSDART00000190552
protein phosphatase 1, regulatory subunit 16A
chr7_-_47381146 0.12 ENSDART00000185596

chr11_-_42750626 0.11 ENSDART00000130640
si:ch73-106k19.5
chr17_+_16429826 0.11 ENSDART00000136078
EF-hand calcium binding domain 11
chr4_-_49720388 0.11 ENSDART00000154146
zinc finger protein 1057
chr14_+_22397251 0.11 ENSDART00000185239
ENSDART00000124072
ENSDART00000054977
ATPase copper transporting alpha
chr10_+_23520952 0.10 ENSDART00000125317
zmp:0000000937
chr2_-_24270062 0.10 ENSDART00000192445
myosin heavy chain 7
chr24_-_36175365 0.10 ENSDART00000065338
PAK1 interacting protein 1
chr6_+_41181869 0.10 ENSDART00000002046
opsin 1 (cone pigments), medium-wave-sensitive, 1
chr18_+_33284202 0.09 ENSDART00000132758
vomeronasal 2 receptor, a17
chr4_-_49720964 0.09 ENSDART00000156103
zinc finger protein 1057
chr23_+_39481537 0.09 ENSDART00000187222
microtubule associated monooxygenase, calponin and LIM domain containing 1
chr25_+_192116 0.09 ENSDART00000153983
zgc:114188
chr18_+_33322515 0.08 ENSDART00000136603
vomeronasal 2 receptor, a18
chr4_-_13502549 0.08 ENSDART00000140366
si:ch211-266a5.12
chr25_-_21763750 0.08 ENSDART00000089596
transmembrane protein 168b
chr5_-_41841892 0.07 ENSDART00000167089
si:dkey-65b12.6
chr2_+_49631850 0.07 ENSDART00000114274
ENSDART00000114516
si:dkey-53k12.18
chr15_-_945804 0.07 ENSDART00000063257
arachidonate 5-lipoxygenase b, tandem duplicate 1
chr20_-_45709990 0.07 ENSDART00000027482
glycerophosphocholine phosphodiesterase 1
chr16_-_23797570 0.07 ENSDART00000077834
ribosomal protein S27, isoform 2
chr8_+_23745167 0.07 ENSDART00000149352
si:ch211-163l21.11
chr9_+_53637932 0.07 ENSDART00000188962

chr11_+_1602916 0.07 ENSDART00000184434
ENSDART00000112597
ENSDART00000192165
si:dkey-40c23.2
si:dkey-40c23.3
chr1_+_532766 0.07 ENSDART00000179731
ENSDART00000060944
mitochondrial ribosomal protein L39
chr7_+_2244859 0.06 ENSDART00000114242
ENSDART00000064292
si:ch211-285c6.4
chr12_+_13742953 0.06 ENSDART00000152257
protein phosphatase 1, regulatory subunit 16A
chr4_+_18782840 0.06 ENSDART00000146450
solute carrier family 26 (anion exchanger), member 4
chr11_+_24002503 0.06 ENSDART00000164702
chitinase, acidic.2
chr4_+_18782539 0.06 ENSDART00000101052
solute carrier family 26 (anion exchanger), member 4
chr7_-_40657831 0.06 ENSDART00000084153
nucleolar protein with MIF4G domain 1
chr4_+_74396786 0.06 ENSDART00000127501
ENSDART00000174347
zmp:0000001020
chr12_+_28854963 0.06 ENSDART00000153227
nuclear factor, erythroid 2-like 1b
chr17_+_4408809 0.05 ENSDART00000113401
si:zfos-364h11.1
chr2_-_51512294 0.05 ENSDART00000185287
si:ch211-9d9.8
chr10_+_14488625 0.05 ENSDART00000026383
sigma non-opioid intracellular receptor 1
chr3_+_1724941 0.05 ENSDART00000193402

chr12_-_35095414 0.05 ENSDART00000153229
si:dkey-21e13.3
chr5_+_69697800 0.05 ENSDART00000178736
ENSDART00000162519
zinc finger protein 1005
chr13_+_9678427 0.05 ENSDART00000153907
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Ga
chr19_-_11949996 0.05 ENSDART00000163478
ENSDART00000167299
cleavage and polyadenylation specific factor 1
chr16_+_26735894 0.05 ENSDART00000191605
ENSDART00000185175
RAD54 homolog B (S. cerevisiae)
chr16_+_41060161 0.05 ENSDART00000141130
SREBF chaperone
chr19_+_10485847 0.05 ENSDART00000135719
si:ch211-171h4.6
chr11_+_24339377 0.05 ENSDART00000133679
ENSDART00000135435
ENSDART00000017973
ENSDART00000131365
ENSDART00000186418
RNA binding motif protein 39a
chr15_+_3246475 0.04 ENSDART00000189565

chr5_+_40224938 0.04 ENSDART00000142897
si:dkey-193c22.2
chr5_-_54395488 0.04 ENSDART00000160781
zinc finger, MYND-type containing 19
chr20_+_4221978 0.04 ENSDART00000171898
interaction protein for cytohesin exchange factors 1
chr20_+_46237000 0.04 ENSDART00000125636
trace amine associated receptor 14a
chr8_+_44478294 0.04 ENSDART00000006898
si:ch73-211l2.3
chr5_-_26247973 0.04 ENSDART00000098527
endoplasmic reticulum aminopeptidase 1b
chr5_+_41477526 0.04 ENSDART00000153567
protein inhibitor of activated STAT, 2
chr10_+_40624702 0.04 ENSDART00000109129
zgc:172131
chr15_-_36352983 0.04 ENSDART00000059786
si:dkey-23k10.5
chr13_+_33368140 0.03 ENSDART00000033848
BRF1, RNA polymerase III transcription initiation factor a
chr2_+_6999369 0.03 ENSDART00000050597
xenotropic and polytropic retrovirus receptor 1b
chr1_-_24255149 0.03 ENSDART00000146960
LPS-responsive vesicle trafficking, beach and anchor containing
chr22_+_2315996 0.03 ENSDART00000132489
zinc finger protein 1175
chr7_-_38183331 0.03 ENSDART00000149382
ATP-binding cassette, sub-family C (CFTR/MRP), member 12
chr17_+_13099476 0.03 ENSDART00000012670
pinin, desmosome associated protein
chr20_+_13783040 0.03 ENSDART00000115329
ENSDART00000152497
lysophosphatidylglycerol acyltransferase 1
chr12_+_19030391 0.03 ENSDART00000153927
si:ch73-139e5.2
chr22_-_5171362 0.03 ENSDART00000124889
tumor necrosis factor, alpha-induced protein 8-like 1
chr14_+_1355857 0.03 ENSDART00000188008
Bardet-Biedl syndrome 12
chr21_-_13972745 0.03 ENSDART00000143874
AT-hook transcription factor
chr14_-_8814590 0.03 ENSDART00000106670
tRNA methyltransferase 11-2 homolog (S. cerevisiae)
chr10_-_32610776 0.03 ENSDART00000017436
monoacylglycerol O-acyltransferase 2
chr7_-_35708450 0.03 ENSDART00000193886
iroquois homeobox 5a
chr19_+_12237945 0.03 ENSDART00000190034
grainyhead-like transcription factor 2b
chr13_+_9678262 0.03 ENSDART00000111365
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Ga
chr15_-_37834433 0.03 ENSDART00000189748
si:dkey-238d18.3
chr6_+_52947699 0.03 ENSDART00000180913
ubiquitin-like modifier activating enzyme 7
chr20_+_4222357 0.02 ENSDART00000188331
interaction protein for cytohesin exchange factors 1
chr11_-_41220794 0.02 ENSDART00000192895
mitochondrial ribosomal protein S16
chr2_-_51275873 0.02 ENSDART00000168019
si:ch211-215e19.4
chr6_-_7686594 0.02 ENSDART00000091836
ENSDART00000151697
ubinuclein 2a
chr25_+_10947743 0.02 ENSDART00000073381
major histocompatibility complex class I LFA
chr15_+_37546391 0.02 ENSDART00000186625
presenilin enhancer gamma secretase subunit
chr14_-_1355544 0.02 ENSDART00000060417
centrin 4
chr7_-_59515569 0.02 ENSDART00000163343
ENSDART00000165457
ENSDART00000163745
SLX1 homolog B, structure-specific endonuclease subunit
chr8_+_32722842 0.02 ENSDART00000147594
hemicentin 2
chr25_+_3788074 0.02 ENSDART00000154008
chitinase domain containing 1
chr6_-_1514767 0.02 ENSDART00000067586
coiled-coil-helix-coiled-coil-helix domain containing 6b
chr6_+_41186320 0.02 ENSDART00000025241
opsin 1 (cone pigments), medium-wave-sensitive, 2
chr4_-_30174588 0.02 ENSDART00000135420
ENSDART00000004188
si:dkey-265e15.5
chr10_+_23441488 0.02 ENSDART00000100783
si:ch73-122g19.1
chr1_-_21901589 0.02 ENSDART00000140553
FERM and PDZ domain containing 1a
chr22_-_11520405 0.02 ENSDART00000063157
solute carrier family 26 (anion exchanger), member 11
chr5_-_24112175 0.02 ENSDART00000131595
si:ch211-114c12.5
chr6_-_40352215 0.02 ENSDART00000103992
tubulin tyrosine ligase-like family, member 3
chr16_+_14201401 0.02 ENSDART00000113679
death associated protein 3
chr21_+_18405585 0.01 ENSDART00000139318
si:dkey-1d7.3
chr10_-_9410068 0.01 ENSDART00000041382
MORN repeat containing 5
chr5_+_13326765 0.01 ENSDART00000090851
YdjC chitooligosaccharide deacetylase homolog
chr5_+_41477954 0.01 ENSDART00000185871
protein inhibitor of activated STAT, 2
chr13_+_25412307 0.01 ENSDART00000175339
calcium homeostasis modulator 1
chr25_+_19008497 0.01 ENSDART00000104420
SAMM50 sorting and assembly machinery component
chr5_-_30615901 0.01 ENSDART00000147769
si:ch211-117m20.5
chr6_+_58832323 0.01 ENSDART00000042595
dynactin 2 (p50)
chr21_-_43094210 0.01 ENSDART00000144747
si:ch73-68b22.2
chr2_-_52020049 0.01 ENSDART00000128198
ENSDART00000135331
sodium channel, voltage gated, type XII, alpha a
chr6_-_18618106 0.01 ENSDART00000161562
zinc finger protein 207, b
chr19_-_22664128 0.01 ENSDART00000136295
eukaryotic translation initiation factor 3, subunit E, b
chr25_-_37180969 0.01 ENSDART00000152338
tudor domain containing 12
chr16_-_11961325 0.01 ENSDART00000143845
si:ch73-296e2.3
chr25_+_18953575 0.01 ENSDART00000155610
thymine DNA glycosylase, tandem duplicate 2
chr4_-_5332814 0.01 ENSDART00000144225
O-sialoglycoprotein endopeptidase
chr20_-_34127415 0.00 ENSDART00000010028
prostaglandin-endoperoxide synthase 2b
chr13_+_25549425 0.00 ENSDART00000087553
ENSDART00000169199
SEC23 interacting protein
chr20_-_39735952 0.00 ENSDART00000101049
ENSDART00000137485
ENSDART00000062402
tumor protein D52-like 1

Network of associatons between targets according to the STRING database.

First level regulatory network of six3a+six3b+six7_six1a+six2a+six2b+six5+six9_six1b

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0010039 response to iron ion(GO:0010039)
0.0 0.2 GO:0070166 enamel mineralization(GO:0070166)
0.0 0.2 GO:0060965 negative regulation of posttranscriptional gene silencing(GO:0060149) negative regulation of gene silencing by miRNA(GO:0060965) negative regulation of gene silencing by RNA(GO:0060967)
0.0 0.1 GO:0019417 sulfur oxidation(GO:0019417)
0.0 0.1 GO:0035434 copper ion transmembrane transport(GO:0035434)
0.0 0.2 GO:0006032 chitin catabolic process(GO:0006032)
0.0 0.1 GO:0070493 thrombin receptor signaling pathway(GO:0070493)
0.0 0.1 GO:0055005 ventricular cardiac myofibril assembly(GO:0055005)
0.0 0.2 GO:0097090 presynaptic membrane organization(GO:0097090) postsynaptic membrane assembly(GO:0097104) presynaptic membrane assembly(GO:0097105)
0.0 0.2 GO:0033198 response to ATP(GO:0033198)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0003994 aconitate hydratase activity(GO:0003994)
0.1 0.2 GO:0004771 sterol esterase activity(GO:0004771)
0.1 0.3 GO:0016519 gastric inhibitory peptide receptor activity(GO:0016519)
0.0 0.2 GO:0017020 myosin phosphatase regulator activity(GO:0017020)
0.0 0.2 GO:0008494 translation activator activity(GO:0008494)
0.0 0.1 GO:0047389 glycerophosphocholine phosphodiesterase activity(GO:0047389)
0.0 0.1 GO:0005375 copper ion transmembrane transporter activity(GO:0005375)
0.0 0.2 GO:0004568 chitinase activity(GO:0004568)
0.0 0.1 GO:0015057 thrombin receptor activity(GO:0015057)
0.0 0.2 GO:0015129 lactate transmembrane transporter activity(GO:0015129)
0.0 0.2 GO:0004931 extracellular ATP-gated cation channel activity(GO:0004931) ATP-gated ion channel activity(GO:0035381)
0.0 0.1 GO:0035804 structural constituent of egg coat(GO:0035804)
0.0 0.0 GO:0015562 inositol hexakisphosphate binding(GO:0000822) efflux transmembrane transporter activity(GO:0015562)
0.0 0.1 GO:0004051 arachidonate 5-lipoxygenase activity(GO:0004051)
0.0 0.1 GO:0004169 dolichyl-phosphate-mannose-protein mannosyltransferase activity(GO:0004169)