Project
PRJNA207719: Tissue specific transcriptome profiling
Navigation
Downloads
Results for nfil3-5
Z-value: 2.08
Motif logo
Transcription factors associated with nfil3-5
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| nfil3-5 | dr11_v1_chr6_+_8172227_8172227 | 0.40 | 5.1e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr24_-_38079261 Show fit | 2.89 |
ENSDART00000105662
|
C-reactive protein 1 |
|
| chr25_+_34984333 Show fit | 2.84 |
ENSDART00000154760
|
coiled-coil domain containing 136b |
|
| chr5_+_37837245 Show fit | 2.31 |
ENSDART00000171617
|
ependymin |
|
| chr3_+_16612574 Show fit | 2.27 |
ENSDART00000104481
|
solute carrier family 17 (vesicular glutamate transporter), member 7a |
|
| chr21_-_22115136 Show fit | 2.08 |
ENSDART00000134715
ENSDART00000089246 ENSDART00000139789 |
ELMO/CED-12 domain containing 1 |
|
| chr21_-_22114625 Show fit | 2.04 |
ENSDART00000177426
ENSDART00000135410 |
ELMO/CED-12 domain containing 1 |
|
| chr14_+_33458294 Show fit | 1.99 |
ENSDART00000075278
|
ATPase Na+/K+ transporting subunit beta 4 |
|
| chr23_+_37323962 Show fit | 1.99 |
ENSDART00000102881
|
family with sequence similarity 43, member B |
|
| chr25_+_15354095 Show fit | 1.84 |
ENSDART00000090397
|
KIAA1549-like a |
|
| chr21_-_43949208 Show fit | 1.83 |
ENSDART00000150983
|
calcium/calmodulin-dependent protein kinase II alpha |
Network of associatons between targets according to the STRING database.
First level regulatory network of nfil3-5
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 4.1 | GO:0043547 | positive regulation of GTPase activity(GO:0043547) |
| 0.1 | 3.2 | GO:0014059 | dopamine secretion(GO:0014046) regulation of dopamine secretion(GO:0014059) |
| 0.4 | 3.0 | GO:0098700 | neurotransmitter loading into synaptic vesicle(GO:0098700) |
| 0.2 | 2.8 | GO:2000054 | negative regulation of Wnt signaling pathway involved in dorsal/ventral axis specification(GO:2000054) |
| 0.0 | 2.5 | GO:0006814 | sodium ion transport(GO:0006814) |
| 0.1 | 2.2 | GO:0015701 | bicarbonate transport(GO:0015701) |
| 0.1 | 2.1 | GO:0045773 | positive regulation of axon extension(GO:0045773) |
| 0.0 | 2.1 | GO:0006414 | translational elongation(GO:0006414) |
| 0.0 | 2.0 | GO:0016579 | protein deubiquitination(GO:0016579) |
| 0.0 | 1.8 | GO:0003146 | heart jogging(GO:0003146) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 4.2 | GO:0070382 | exocytic vesicle(GO:0070382) |
| 0.0 | 3.7 | GO:0014069 | postsynaptic density(GO:0014069) |
| 0.1 | 3.4 | GO:0030672 | synaptic vesicle membrane(GO:0030672) exocytic vesicle membrane(GO:0099501) |
| 0.1 | 3.1 | GO:1902711 | GABA receptor complex(GO:1902710) GABA-A receptor complex(GO:1902711) |
| 0.2 | 3.0 | GO:0030285 | integral component of synaptic vesicle membrane(GO:0030285) intrinsic component of synaptic vesicle membrane(GO:0098563) |
| 0.7 | 2.1 | GO:0032839 | dendrite cytoplasm(GO:0032839) |
| 0.0 | 2.1 | GO:0030427 | site of polarized growth(GO:0030427) |
| 0.2 | 2.0 | GO:0090533 | sodium:potassium-exchanging ATPase complex(GO:0005890) cation-transporting ATPase complex(GO:0090533) |
| 0.0 | 1.8 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.1 | 1.3 | GO:0031306 | intrinsic component of mitochondrial outer membrane(GO:0031306) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 6.7 | GO:0004683 | calmodulin-dependent protein kinase activity(GO:0004683) |
| 0.0 | 4.9 | GO:0003924 | GTPase activity(GO:0003924) |
| 0.0 | 4.5 | GO:0005096 | GTPase activator activity(GO:0005096) |
| 0.0 | 4.2 | GO:0005085 | guanyl-nucleotide exchange factor activity(GO:0005085) |
| 0.2 | 3.0 | GO:0005326 | neurotransmitter transporter activity(GO:0005326) |
| 0.1 | 2.8 | GO:0001786 | phosphatidylserine binding(GO:0001786) |
| 0.1 | 2.2 | GO:0004693 | cyclin-dependent protein serine/threonine kinase activity(GO:0004693) cyclin-dependent protein kinase activity(GO:0097472) |
| 0.2 | 2.1 | GO:0022851 | benzodiazepine receptor activity(GO:0008503) GABA-gated chloride ion channel activity(GO:0022851) |
| 0.0 | 2.1 | GO:0003746 | translation elongation factor activity(GO:0003746) |
| 0.0 | 2.1 | GO:0004843 | thiol-dependent ubiquitin-specific protease activity(GO:0004843) thiol-dependent ubiquitinyl hydrolase activity(GO:0036459) ubiquitinyl hydrolase activity(GO:0101005) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.8 | ST WNT CA2 CYCLIC GMP PATHWAY | Wnt/Ca2+/cyclic GMP signaling. |
| 0.1 | 1.8 | PID CD8 TCR DOWNSTREAM PATHWAY | Downstream signaling in naïve CD8+ T cells |
| 0.1 | 1.8 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
| 0.1 | 1.3 | PID S1P S1P2 PATHWAY | S1P2 pathway |
| 0.0 | 0.9 | PID RAC1 REG PATHWAY | Regulation of RAC1 activity |
| 0.0 | 0.8 | PID AURORA B PATHWAY | Aurora B signaling |
| 0.0 | 0.8 | PID ECADHERIN STABILIZATION PATHWAY | Stabilization and expansion of the E-cadherin adherens junction |
| 0.0 | 0.8 | PID LKB1 PATHWAY | LKB1 signaling events |
| 0.0 | 0.4 | PID RXR VDR PATHWAY | RXR and RAR heterodimerization with other nuclear receptor |
| 0.0 | 0.4 | PID RHOA PATHWAY | RhoA signaling pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 1.8 | REACTOME UNBLOCKING OF NMDA RECEPTOR GLUTAMATE BINDING AND ACTIVATION | Genes involved in Unblocking of NMDA receptor, glutamate binding and activation |
| 0.1 | 1.8 | REACTOME ACTIVATION OF NMDA RECEPTOR UPON GLUTAMATE BINDING AND POSTSYNAPTIC EVENTS | Genes involved in Activation of NMDA receptor upon glutamate binding and postsynaptic events |
| 0.1 | 1.6 | REACTOME G PROTEIN ACTIVATION | Genes involved in G-protein activation |
| 0.1 | 1.5 | REACTOME LIGAND GATED ION CHANNEL TRANSPORT | Genes involved in Ligand-gated ion channel transport |
| 0.0 | 1.0 | REACTOME TRANSPORT OF INORGANIC CATIONS ANIONS AND AMINO ACIDS OLIGOPEPTIDES | Genes involved in Transport of inorganic cations/anions and amino acids/oligopeptides |
| 0.0 | 0.9 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.0 | 0.9 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |
| 0.0 | 0.8 | REACTOME ERK MAPK TARGETS | Genes involved in ERK/MAPK targets |
| 0.0 | 0.8 | REACTOME EFFECTS OF PIP2 HYDROLYSIS | Genes involved in Effects of PIP2 hydrolysis |
| 0.1 | 0.6 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |