ISMARA results: myod1

Project

PRJNA207719: Tissue specific transcriptome profiling

Navigation

Downloads

Results for myod1

Z-value: 2.32

Motif logo

Transcription factors associated with myod1

Gene Symbol	Gene ID	Gene Info
myod1 NCBI UniProt	ENSDARG00000030110	myogenic differentiation 1

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
myod1	dr11_v1_chr25_-_31423493_31423493	0.84	7.7e-02	Click!

Activity profile of myod1 motif

Sorted Z-values of myod1 motif

Top targets:

Search:

Show entries

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr8_-_1051438 Show fit	2.02	ENSDART00000067093 ENSDART00000170737	smyd1b NCBI UniProt Show fit	SET and MYND domain containing 1b
chr22_-_14128716 Show fit	1.81	ENSDART00000140323	si:ch211-246m6.4 NCBI UniProt Show fit	si:ch211-246m6.4
chr3_-_32817274 Show fit	1.63	ENSDART00000142582	mylpfa NCBI UniProt Show fit	myosin light chain, phosphorylatable, fast skeletal muscle a
chr3_+_32526799 Show fit	1.54	ENSDART00000185755	si:ch73-367p23.2 NCBI UniProt Show fit	si:ch73-367p23.2
chr3_+_32526263 Show fit	1.40	ENSDART00000150897	si:ch73-367p23.2 NCBI UniProt Show fit	si:ch73-367p23.2
chr22_-_651719 Show fit	1.37	ENSDART00000148692	apobec2a NCBI UniProt Show fit	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2a
chr2_+_55982940 Show fit	1.37	ENSDART00000097753 ENSDART00000097751	nmrk2 NCBI UniProt Show fit	nicotinamide riboside kinase 2
chr6_-_42003780 Show fit	1.30	ENSDART00000032527	cav3 NCBI UniProt Show fit	caveolin 3
chr20_-_27325258 Show fit	1.24	ENSDART00000152917	asb2a.1 NCBI UniProt Show fit	ankyrin repeat and SOCS box containing 2a, tandem duplicate 1
chr9_-_98982 Show fit	1.22	ENSDART00000147882	lims2 NCBI UniProt Show fit	LIM and senescent cell antigen-like domains 2

Showing 1 to 10 of 200 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of myod1

View svg image
View png image

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.6	3.2	GO:0003210	cardiac atrium formation(GO:0003210)
0.2	2.8	GO:0030241	skeletal muscle myosin thick filament assembly(GO:0030241)
0.3	2.5	GO:0003209	cardiac atrium morphogenesis(GO:0003209)
0.2	2.1	GO:0061620	glucose catabolic process(GO:0006007) NADH regeneration(GO:0006735) glycolytic process through fructose-6-phosphate(GO:0061615) glycolytic process through glucose-6-phosphate(GO:0061620) canonical glycolysis(GO:0061621) glucose catabolic process to pyruvate(GO:0061718)
0.7	2.0	GO:0098528	skeletal muscle fiber differentiation(GO:0098528)
0.0	1.7	GO:0000187	activation of MAPK activity(GO:0000187)
0.0	1.7	GO:0030239	myofibril assembly(GO:0030239)
0.5	1.4	GO:0016554	cytidine to uridine editing(GO:0016554) positive regulation of DNA binding(GO:0043388)
0.1	1.4	GO:0035914	skeletal muscle cell differentiation(GO:0035914)
0.1	1.4	GO:0055008	cardiac muscle tissue morphogenesis(GO:0055008)

Showing 1 to 10 of 119 entries

Gene overrepresentation in cellular component category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	7.2	GO:0030018	Z disc(GO:0030018)
0.2	5.5	GO:0031672	A band(GO:0031672)
0.0	2.9	GO:0030055	cell-substrate junction(GO:0030055)
0.1	2.6	GO:0005901	caveola(GO:0005901) plasma membrane raft(GO:0044853)
0.1	2.3	GO:0005861	troponin complex(GO:0005861)
0.2	2.1	GO:0005945	6-phosphofructokinase complex(GO:0005945)
0.1	1.6	GO:0033017	sarcoplasmic reticulum membrane(GO:0033017)
0.0	1.1	GO:0016323	basolateral plasma membrane(GO:0016323)
0.1	0.6	GO:0008091	spectrin(GO:0008091)
0.1	0.6	GO:0061617	MICOS complex(GO:0061617)

Showing 1 to 10 of 45 entries

Gene overrepresentation in molecular function category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	3.8	GO:0051015	actin filament binding(GO:0051015)
0.3	3.2	GO:0032036	myosin heavy chain binding(GO:0032036)
0.4	2.6	GO:0050262	ribosylnicotinamide kinase activity(GO:0050262)
0.2	2.1	GO:0070095	6-phosphofructokinase activity(GO:0003872) fructose-6-phosphate binding(GO:0070095)
0.1	1.9	GO:0051879	Hsp90 protein binding(GO:0051879)
0.1	1.8	GO:0004708	MAP kinase kinase activity(GO:0004708)
0.2	1.7	GO:0051373	telethonin binding(GO:0031433) FATZ binding(GO:0051373)
0.1	1.7	GO:0042800	histone methyltransferase activity (H3-K4 specific)(GO:0042800)
0.0	1.6	GO:0044325	ion channel binding(GO:0044325)
0.3	1.3	GO:0071253	connexin binding(GO:0071253)

Showing 1 to 10 of 81 entries

Gene overrepresentation in curated gene sets: canonical pathways category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	1.6	PID NFAT 3PATHWAY	Role of Calcineurin-dependent NFAT signaling in lymphocytes
0.0	1.4	PID ILK PATHWAY	Integrin-linked kinase signaling
0.1	1.3	ST MYOCYTE AD PATHWAY	Myocyte Adrenergic Pathway is a specific case of the generalized Adrenergic Pathway.
0.0	1.1	PID INSULIN PATHWAY	Insulin Pathway
0.0	0.9	NABA PROTEOGLYCANS	Genes encoding proteoglycans
0.0	0.7	PID BMP PATHWAY	BMP receptor signaling
0.0	0.6	PID INSULIN GLUCOSE PATHWAY	Insulin-mediated glucose transport
0.0	0.5	PID IL12 STAT4 PATHWAY	IL12 signaling mediated by STAT4
0.0	0.3	PID WNT SIGNALING PATHWAY	Wnt signaling network
0.0	0.2	ST WNT CA2 CYCLIC GMP PATHWAY	Wnt/Ca2+/cyclic GMP signaling.

Showing 1 to 10 of 12 entries

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	2.1	REACTOME STRIATED MUSCLE CONTRACTION	Genes involved in Striated Muscle Contraction
0.1	0.9	REACTOME MUSCLE CONTRACTION	Genes involved in Muscle contraction
0.1	0.8	REACTOME INTERACTION BETWEEN L1 AND ANKYRINS	Genes involved in Interaction between L1 and Ankyrins
0.0	0.8	REACTOME PIP3 ACTIVATES AKT SIGNALING	Genes involved in PIP3 activates AKT signaling
0.0	0.8	REACTOME MYOGENESIS	Genes involved in Myogenesis
0.0	0.6	REACTOME CS DS DEGRADATION	Genes involved in CS/DS degradation
0.0	0.5	REACTOME GLUCONEOGENESIS	Genes involved in Gluconeogenesis
0.1	0.4	REACTOME KERATAN SULFATE DEGRADATION	Genes involved in Keratan sulfate degradation
0.0	0.4	REACTOME NCAM1 INTERACTIONS	Genes involved in NCAM1 interactions
0.0	0.4	REACTOME NETRIN1 SIGNALING	Genes involved in Netrin-1 signaling

Showing 1 to 10 of 19 entries

Results for myod1

Z-value: 2.32

Motif logo

Transcription factors associated with myod1

Activity-expression correlation:

Activity profile of myod1 motif

Sorted Z-values of myod1 motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of myod1

In order to view interactive SVG image please either update your browser to latest version or install SVG plugin.

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category:

Gene overrepresentation in curated gene sets: canonical pathways category:

Gene overrepresentation in curated gene sets: REACTOME pathways category: