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PRJNA207719: Tissue specific transcriptome profiling

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Results for meis3

Z-value: 0.54

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Transcription factors associated with meis3

Gene Symbol Gene ID Gene Info
meis3
ENSDARG00000002795 myeloid ecotropic viral integration site 3

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
meis3dr11_v1_chr15_-_6863317_68633170.622.6e-01Click!

Activity profile of meis3 motif

Sorted Z-values of meis3 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr23_-_10177442 0.59 ENSDART00000144280
ENSDART00000129044
krt5
keratin 5
chr15_-_29598679 0.38 ENSDART00000155153
si:ch211-207n23.2
si:ch211-207n23.2
chr6_+_3827751 0.33 ENSDART00000003008
ENSDART00000122348
gad1b
glutamate decarboxylase 1b
chr15_-_29598444 0.31 ENSDART00000154847
si:ch211-207n23.2
si:ch211-207n23.2
chr21_+_45733871 0.30 ENSDART00000187285
ENSDART00000193018
zgc:77058
zgc:77058
chr10_-_39011514 0.30 ENSDART00000075123
pcp4a
Purkinje cell protein 4a
chr6_-_14146979 0.27 ENSDART00000089564
cacnb4b
calcium channel, voltage-dependent, beta 4b subunit
chr18_+_36769758 0.27 ENSDART00000180375
ENSDART00000136463
ENSDART00000133487
ENSDART00000130206
fosb
FBJ murine osteosarcoma viral oncogene homolog B
chr6_+_48041759 0.25 ENSDART00000140086
si:dkey-92f12.2
si:dkey-92f12.2
chr8_+_26329482 0.25 ENSDART00000048676
prkar2aa
protein kinase, cAMP-dependent, regulatory, type II, alpha A
chr5_+_24245682 0.25 ENSDART00000049003
atp6v1aa
ATPase H+ transporting V1 subunit Aa
chr15_-_4415917 0.24 ENSDART00000062874
atp1b3b
ATPase Na+/K+ transporting subunit beta 3b
chr8_+_25959940 0.23 ENSDART00000143011
ENSDART00000140626
si:dkey-72l14.4
si:dkey-72l14.4
chr23_-_15216654 0.22 ENSDART00000131649
sulf2b
sulfatase 2b
chr6_-_39631164 0.22 ENSDART00000104042
ENSDART00000136076
atf7b
activating transcription factor 7b
chr17_+_33495194 0.21 ENSDART00000033691
pth2
parathyroid hormone 2
chr10_+_26961965 0.20 ENSDART00000089144
vps51
vacuolar protein sorting 51 homolog (S. cerevisiae)
chr19_+_24872159 0.19 ENSDART00000158490
si:ch211-195b13.1
si:ch211-195b13.1
chr2_+_6127593 0.19 ENSDART00000184007
fzr1b
fizzy/cell division cycle 20 related 1b
chr8_-_27515540 0.19 ENSDART00000146132
si:ch211-254n4.3
si:ch211-254n4.3
chr9_-_28399071 0.18 ENSDART00000104317
ENSDART00000064343
klf7b
Kruppel-like factor 7b
chr6_+_9107063 0.18 ENSDART00000083820
vps16
vacuolar protein sorting protein 16
chr19_-_30565122 0.17 ENSDART00000185650
hpcal4
hippocalcin like 4
chr10_+_26667475 0.17 ENSDART00000133281
ENSDART00000147013
si:ch73-52f15.5
si:ch73-52f15.5
chr5_-_46980651 0.16 ENSDART00000181022
ENSDART00000168038
edil3a
EGF-like repeats and discoidin I-like domains 3a
chr3_-_21118969 0.16 ENSDART00000129016
maza
MYC-associated zinc finger protein a (purine-binding transcription factor)
chr22_-_22231720 0.15 ENSDART00000160165
ap3d1
adaptor-related protein complex 3, delta 1 subunit
chr5_+_37091626 0.14 ENSDART00000161054
tagln2
transgelin 2
chr5_+_23118470 0.14 ENSDART00000149893
nexmifa
neurite extension and migration factor a
chr6_+_33537267 0.13 ENSDART00000040334
pik3r3b
phosphoinositide-3-kinase, regulatory subunit 3b (gamma)
chr23_+_23182037 0.13 ENSDART00000137353
klhl17
kelch-like family member 17
chr6_-_13408680 0.13 ENSDART00000151566
fmnl2b
formin-like 2b
chr2_-_44183613 0.13 ENSDART00000079596
cadm3
cell adhesion molecule 3
chr2_+_47623202 0.13 ENSDART00000154465
si:ch211-165b10.3
si:ch211-165b10.3
chr16_-_11986321 0.12 ENSDART00000148666
ENSDART00000029121
usp5
ubiquitin specific peptidase 5 (isopeptidase T)
chr2_-_44183451 0.12 ENSDART00000111246
cadm3
cell adhesion molecule 3
chr11_-_18799827 0.12 ENSDART00000185438
ENSDART00000189116
ENSDART00000180504
pfkfb2b
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2b
chr18_+_36770166 0.12 ENSDART00000078151
fosb
FBJ murine osteosarcoma viral oncogene homolog B
chr7_-_19369002 0.12 ENSDART00000165680
ntn4
netrin 4
chr4_+_20812900 0.12 ENSDART00000005847
nav3
neuron navigator 3
chr24_-_30091937 0.12 ENSDART00000148249
plppr4b
phospholipid phosphatase related 4b
chr23_-_7125494 0.12 ENSDART00000111929
slco4a1
solute carrier organic anion transporter family, member 4A1
chr14_-_26436951 0.12 ENSDART00000140173
si:dkeyp-110e4.6
si:dkeyp-110e4.6
chr19_+_42693855 0.11 ENSDART00000136873
clasp2
cytoplasmic linker associated protein 2
chr14_-_17305657 0.10 ENSDART00000168853
jakmip1
janus kinase and microtubule interacting protein 1
chr7_-_18881358 0.10 ENSDART00000021502
mllt3
MLLT3, super elongation complex subunit
chr6_-_30210378 0.10 ENSDART00000157359
ENSDART00000113924
lrrc7
leucine rich repeat containing 7
chr8_-_1838315 0.10 ENSDART00000114476
ENSDART00000140077
pi4kab
phosphatidylinositol 4-kinase, catalytic, alpha b
chr23_-_20126257 0.10 ENSDART00000005021
tktb
transketolase b
chr5_-_15283509 0.10 ENSDART00000052712
gnb1l
guanine nucleotide binding protein (G protein), beta polypeptide 1-like
chr9_-_29844596 0.09 ENSDART00000138574
il1rapl1a
interleukin 1 receptor accessory protein-like 1a
chr5_-_43682930 0.09 ENSDART00000075017
si:dkey-40c11.1
si:dkey-40c11.1
chr7_-_67214972 0.09 ENSDART00000156861
swap70a
switching B cell complex subunit SWAP70a
chr12_+_36413886 0.09 ENSDART00000126325
si:ch211-250n8.1
si:ch211-250n8.1
chr19_-_42588510 0.09 ENSDART00000102583
sytl1
synaptotagmin-like 1
chr20_-_22798794 0.09 ENSDART00000148084
fip1l1a
FIP1 like 1a (S. cerevisiae)
chr2_-_32558795 0.08 ENSDART00000140026
smarcd3a
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3a
chr19_+_20713424 0.08 ENSDART00000129730
rab5aa
RAB5A, member RAS oncogene family, a
chr21_+_30194904 0.08 ENSDART00000137023
ENSDART00000078403
BRD8
si:ch211-59d17.3
chr8_-_32506569 0.08 ENSDART00000061792
RFESD (1 of many)
Rieske Fe-S domain containing
chr5_-_32396929 0.08 ENSDART00000023977
fbxw2
F-box and WD repeat domain containing 2
chr6_+_9952678 0.08 ENSDART00000019325
cyp20a1
cytochrome P450, family 20, subfamily A, polypeptide 1
chr22_+_30335936 0.08 ENSDART00000059923
mxi1
max interactor 1, dimerization protein
chr14_-_9355177 0.07 ENSDART00000138535
fam46d
family with sequence similarity 46, member D
chr10_-_32877348 0.07 ENSDART00000018977
ENSDART00000133421
rabgef1
RAB guanine nucleotide exchange factor (GEF) 1
chr23_+_25172682 0.07 ENSDART00000191197
ENSDART00000183497
si:dkey-151g10.3
si:dkey-151g10.3
chr8_-_7444155 0.07 ENSDART00000148993
hdac6
histone deacetylase 6
chr24_+_17349177 0.07 ENSDART00000176338
ezh2
enhancer of zeste 2 polycomb repressive complex 2 subunit
chr10_-_33379850 0.07 ENSDART00000186924
ska2
spindle and kinetochore associated complex subunit 2
chr13_+_22295905 0.06 ENSDART00000180133
ENSDART00000181125
usp54a
ubiquitin specific peptidase 54a
chr25_-_7753207 0.06 ENSDART00000126499
phf21ab
PHD finger protein 21Ab
chr1_+_34496855 0.06 ENSDART00000012873
klf12a
Kruppel-like factor 12a
chr7_+_6879534 0.06 ENSDART00000157731
zgc:175248
zgc:175248
chr25_-_10610961 0.06 ENSDART00000153474
ppp6r3
protein phosphatase 6, regulatory subunit 3
chr8_+_144154 0.05 ENSDART00000164099
snx2
sorting nexin 2
chr4_-_25908871 0.05 ENSDART00000066949
fgd6
FYVE, RhoGEF and PH domain containing 6
chr3_-_45308394 0.05 ENSDART00000155324
pdpk1a
3-phosphoinositide dependent protein kinase 1a
chr24_+_12989727 0.05 ENSDART00000126842
ENSDART00000129309
flj11011l
hypothetical protein FLJ11011-like (H. sapiens)
chr13_+_30169681 0.04 ENSDART00000138326
pald1b
phosphatase domain containing, paladin 1b
chr6_+_15762647 0.04 ENSDART00000127133
ENSDART00000128939
iqca1
IQ motif containing with AAA domain 1
chr23_-_10696626 0.04 ENSDART00000177571
foxp1a
forkhead box P1a
chr20_+_44311448 0.04 ENSDART00000114660
opn8b
opsin 8, group member b
chr17_-_43552894 0.04 ENSDART00000181226
ENSDART00000188125
nt5c1ab
5'-nucleotidase, cytosolic IAb
chr17_-_15667198 0.04 ENSDART00000142972
ENSDART00000132571
ENSDART00000189936
manea
mannosidase, endo-alpha
chr16_-_29146624 0.04 ENSDART00000159814
ENSDART00000009826
mef2d
myocyte enhancer factor 2d
chr23_+_25172976 0.04 ENSDART00000140789
si:dkey-151g10.3
si:dkey-151g10.3
chr8_-_25569920 0.03 ENSDART00000136869
prex1
phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1
chr18_+_660578 0.03 ENSDART00000161203
CELF6
si:dkey-205h23.2
chr10_+_4964463 0.03 ENSDART00000109882
lyrm7
LYR motif containing 7
chr25_-_22191733 0.03 ENSDART00000067478
pkp3a
plakophilin 3a
chr7_-_26306546 0.03 ENSDART00000140817
zgc:77439
zgc:77439
chr2_+_45696743 0.03 ENSDART00000114225
ENSDART00000169279
CU467828.1

chr5_-_37341044 0.02 ENSDART00000084675
wdr44
WD repeat domain 44
chr2_+_36112273 0.02 ENSDART00000191315
traj35
T-cell receptor alpha joining 35
chr20_-_26467307 0.02 ENSDART00000078072
ENSDART00000158213
akap12b
A kinase (PRKA) anchor protein 12b
chr15_-_23442891 0.02 ENSDART00000059376
ube4a
ubiquitination factor E4A (UFD2 homolog, yeast)
chr8_-_4508248 0.02 ENSDART00000141915
si:ch211-166a6.5
si:ch211-166a6.5
chr14_-_51014292 0.01 ENSDART00000029797
faf2
Fas associated factor family member 2
chr8_-_18225968 0.01 ENSDART00000135504
si:ch211-241d21.5
si:ch211-241d21.5
chr19_+_34742706 0.01 ENSDART00000103276
fam206a
family with sequence similarity 206, member A
chr23_-_33680265 0.01 ENSDART00000138416
tfcp2
transcription factor CP2
chr5_+_57726425 0.01 ENSDART00000134684
fdxacb1
ferredoxin-fold anticodon binding domain containing 1
chr20_-_26421112 0.01 ENSDART00000183767
ENSDART00000182330
akap12b
A kinase (PRKA) anchor protein 12b
chr20_-_26420939 0.01 ENSDART00000110883
akap12b
A kinase (PRKA) anchor protein 12b
chr2_-_39090258 0.01 ENSDART00000134270
ENSDART00000145268
NMNAT3
si:ch73-170l17.1
chr23_+_21663631 0.01 ENSDART00000066125
dhrs3a
dehydrogenase/reductase (SDR family) member 3a
chr7_-_30174882 0.00 ENSDART00000110409
frmd5
FERM domain containing 5
chr20_-_23171430 0.00 ENSDART00000109234
spata18
spermatogenesis associated 18
chr23_-_33679579 0.00 ENSDART00000188674
tfcp2
transcription factor CP2
chr25_+_19670273 0.00 ENSDART00000073472
zgc:113426
zgc:113426
chr17_+_7595356 0.00 ENSDART00000130625
si:dkeyp-110a12.4
si:dkeyp-110a12.4

Network of associatons between targets according to the STRING database.

First level regulatory network of meis3

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0009449 gamma-aminobutyric acid biosynthetic process(GO:0009449)
0.0 0.1 GO:0010812 negative regulation of cell-substrate adhesion(GO:0010812) negative regulation of cell-cell adhesion mediated by cadherin(GO:2000048)
0.0 0.2 GO:0044241 lipid digestion(GO:0044241)
0.0 0.2 GO:1904668 positive regulation of ubiquitin protein ligase activity(GO:1904668)
0.0 0.1 GO:0048169 regulation of long-term neuronal synaptic plasticity(GO:0048169)
0.0 0.2 GO:0021634 optic nerve formation(GO:0021634)
0.0 0.2 GO:0042144 vacuole fusion, non-autophagic(GO:0042144)
0.0 0.4 GO:0006883 cellular sodium ion homeostasis(GO:0006883)
0.0 0.3 GO:0010738 regulation of protein kinase A signaling(GO:0010738)
0.0 0.1 GO:0048490 anterograde synaptic vesicle transport(GO:0048490) synaptic vesicle cytoskeletal transport(GO:0099514) synaptic vesicle transport along microtubule(GO:0099517)
0.0 0.2 GO:0035860 esophagus smooth muscle contraction(GO:0014846) glial cell-derived neurotrophic factor receptor signaling pathway(GO:0035860)
0.0 0.2 GO:0032418 lysosome localization(GO:0032418)
0.0 0.1 GO:0032185 septin ring organization(GO:0031106) septin cytoskeleton organization(GO:0032185)
0.0 0.1 GO:0070734 histone H3-K27 methylation(GO:0070734)
0.0 0.1 GO:0043550 regulation of lipid kinase activity(GO:0043550) regulation of phosphatidylinositol 3-kinase activity(GO:0043551)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:1990745 EARP complex(GO:1990745)
0.1 0.6 GO:0045095 keratin filament(GO:0045095)
0.0 0.2 GO:0033263 CORVET complex(GO:0033263)
0.0 0.2 GO:0005952 cAMP-dependent protein kinase complex(GO:0005952)
0.0 0.2 GO:0090533 sodium:potassium-exchanging ATPase complex(GO:0005890) cation-transporting ATPase complex(GO:0090533)
0.0 0.1 GO:0098842 postsynaptic early endosome(GO:0098842)
0.0 0.2 GO:0033180 proton-transporting V-type ATPase, V1 domain(GO:0033180)
0.0 0.1 GO:0005826 actomyosin contractile ring(GO:0005826)
0.0 0.3 GO:0031229 integral component of nuclear inner membrane(GO:0005639) intrinsic component of nuclear inner membrane(GO:0031229) nuclear membrane part(GO:0044453)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0004351 glutamate decarboxylase activity(GO:0004351)
0.0 0.2 GO:0010997 anaphase-promoting complex binding(GO:0010997) ubiquitin ligase activator activity(GO:1990757)
0.0 0.2 GO:0008603 cAMP-dependent protein kinase regulator activity(GO:0008603)
0.0 0.1 GO:0050135 NAD(P)+ nucleosidase activity(GO:0050135)
0.0 0.2 GO:0046933 proton-transporting ATP synthase activity, rotational mechanism(GO:0046933)
0.0 0.3 GO:0043495 protein anchor(GO:0043495)
0.0 0.1 GO:0016744 transferase activity, transferring aldehyde or ketonic groups(GO:0016744)
0.0 0.1 GO:0004430 1-phosphatidylinositol 4-kinase activity(GO:0004430)
0.0 0.2 GO:0030546 receptor activator activity(GO:0030546) receptor agonist activity(GO:0048018)
0.0 0.2 GO:0008449 N-acetylglucosamine-6-sulfatase activity(GO:0008449)
0.0 0.2 GO:0001671 ATPase activator activity(GO:0001671)
0.0 0.2 GO:0035497 cAMP response element binding(GO:0035497)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.6 PID DELTA NP63 PATHWAY Validated transcriptional targets of deltaNp63 isoforms

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 REACTOME TRANSPORT OF ORGANIC ANIONS Genes involved in Transport of organic anions