PRJNA207719: Tissue specific transcriptome profiling
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
mef2d | dr11_v1_chr16_-_29164379_29164379 | 0.52 | 3.7e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr11_+_11201096 Show fit | 5.62 |
ENSDART00000171916
ENSDART00000171521 ENSDART00000087105 ENSDART00000159603 |
myomesin 2a |
|
chr1_+_7546259 Show fit | 3.90 |
ENSDART00000015732
|
myosin, light polypeptide 3, skeletal muscle |
|
chr25_+_29160102 Show fit | 3.65 |
ENSDART00000162854
|
pyruvate kinase M1/2b |
|
chr16_+_25245857 Show fit | 3.49 |
ENSDART00000155220
|
kelch-like family member 38b |
|
chr11_+_11200550 Show fit | 3.43 |
ENSDART00000181339
ENSDART00000187116 |
myomesin 2a |
|
chr3_-_61205711 Show fit | 3.27 |
ENSDART00000055062
|
parvalbumin 1 |
|
chr21_+_28445052 Show fit | 3.19 |
ENSDART00000077871
|
phosphorylase, glycogen, muscle A |
|
chr23_+_20110086 Show fit | 3.07 |
ENSDART00000054664
|
troponin C type 1b (slow) |
|
chr18_+_26719787 Show fit | 3.04 |
ENSDART00000141672
|
alpha-kinase 3a |
|
chr16_-_43356018 Show fit | 3.01 |
ENSDART00000181683
|
|
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 7.5 | GO:0006936 | muscle contraction(GO:0006936) |
0.0 | 6.7 | GO:0016567 | protein ubiquitination(GO:0016567) |
0.1 | 6.0 | GO:0003009 | skeletal muscle contraction(GO:0003009) |
0.1 | 5.6 | GO:0006096 | glycolytic process(GO:0006096) |
0.4 | 5.2 | GO:0042396 | phosphagen metabolic process(GO:0006599) phosphocreatine metabolic process(GO:0006603) phosphagen biosynthetic process(GO:0042396) phosphocreatine biosynthetic process(GO:0046314) |
0.4 | 5.1 | GO:0032264 | IMP salvage(GO:0032264) |
0.1 | 4.8 | GO:0010842 | retina layer formation(GO:0010842) |
0.9 | 4.6 | GO:0003210 | cardiac atrium formation(GO:0003210) |
0.2 | 4.5 | GO:0032233 | positive regulation of actin filament bundle assembly(GO:0032233) |
0.2 | 4.4 | GO:0070536 | protein K63-linked deubiquitination(GO:0070536) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 13.4 | GO:0031430 | M band(GO:0031430) |
0.1 | 11.8 | GO:0030018 | Z disc(GO:0030018) |
0.1 | 8.3 | GO:0005865 | striated muscle thin filament(GO:0005865) myofilament(GO:0036379) |
0.1 | 4.5 | GO:0031463 | Cul3-RING ubiquitin ligase complex(GO:0031463) |
0.1 | 3.1 | GO:0033017 | sarcoplasmic reticulum membrane(GO:0033017) |
0.2 | 3.0 | GO:0000164 | protein phosphatase type 1 complex(GO:0000164) |
0.0 | 3.0 | GO:0042383 | sarcolemma(GO:0042383) |
0.1 | 2.3 | GO:0080008 | Cul4-RING E3 ubiquitin ligase complex(GO:0080008) |
0.3 | 1.8 | GO:0033018 | sarcoplasmic reticulum lumen(GO:0033018) |
0.2 | 1.8 | GO:0000015 | phosphopyruvate hydratase complex(GO:0000015) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 11.5 | GO:0051015 | actin filament binding(GO:0051015) |
0.0 | 10.9 | GO:0005509 | calcium ion binding(GO:0005509) |
0.0 | 6.4 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
0.4 | 5.2 | GO:0016775 | creatine kinase activity(GO:0004111) phosphotransferase activity, nitrogenous group as acceptor(GO:0016775) |
0.5 | 5.1 | GO:0032036 | myosin heavy chain binding(GO:0032036) |
0.5 | 5.1 | GO:0047623 | AMP deaminase activity(GO:0003876) adenosine-phosphate deaminase activity(GO:0047623) |
0.0 | 5.0 | GO:0003779 | actin binding(GO:0003779) |
0.0 | 4.3 | GO:0036459 | thiol-dependent ubiquitin-specific protease activity(GO:0004843) thiol-dependent ubiquitinyl hydrolase activity(GO:0036459) ubiquitinyl hydrolase activity(GO:0101005) |
0.6 | 3.7 | GO:0004743 | pyruvate kinase activity(GO:0004743) |
0.2 | 3.3 | GO:0030544 | Hsp70 protein binding(GO:0030544) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.8 | NABA COLLAGENS | Genes encoding collagen proteins |
0.1 | 2.2 | PID ECADHERIN STABILIZATION PATHWAY | Stabilization and expansion of the E-cadherin adherens junction |
0.0 | 2.0 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
0.1 | 1.8 | ST MYOCYTE AD PATHWAY | Myocyte Adrenergic Pathway is a specific case of the generalized Adrenergic Pathway. |
0.0 | 1.8 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
0.1 | 1.5 | PID RXR VDR PATHWAY | RXR and RAR heterodimerization with other nuclear receptor |
0.0 | 1.1 | SIG REGULATION OF THE ACTIN CYTOSKELETON BY RHO GTPASES | Genes related to regulation of the actin cytoskeleton |
0.0 | 1.1 | PID ILK PATHWAY | Integrin-linked kinase signaling |
0.1 | 0.9 | PID SMAD2 3PATHWAY | Regulation of cytoplasmic and nuclear SMAD2/3 signaling |
0.0 | 0.9 | PID CMYB PATHWAY | C-MYB transcription factor network |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 2.7 | REACTOME PURINE SALVAGE | Genes involved in Purine salvage |
0.1 | 2.3 | REACTOME GLYCOLYSIS | Genes involved in Glycolysis |
0.2 | 2.1 | REACTOME PURINE RIBONUCLEOSIDE MONOPHOSPHATE BIOSYNTHESIS | Genes involved in Purine ribonucleoside monophosphate biosynthesis |
0.2 | 1.9 | REACTOME GENERATION OF SECOND MESSENGER MOLECULES | Genes involved in Generation of second messenger molecules |
0.0 | 1.5 | REACTOME COLLAGEN FORMATION | Genes involved in Collagen formation |
0.1 | 1.4 | REACTOME AMYLOIDS | Genes involved in Amyloids |
0.0 | 1.4 | REACTOME PIP3 ACTIVATES AKT SIGNALING | Genes involved in PIP3 activates AKT signaling |
0.2 | 1.3 | REACTOME PLATELET ADHESION TO EXPOSED COLLAGEN | Genes involved in Platelet Adhesion to exposed collagen |
0.1 | 1.2 | REACTOME SYNTHESIS OF PE | Genes involved in Synthesis of PE |
0.1 | 1.0 | REACTOME CELL EXTRACELLULAR MATRIX INTERACTIONS | Genes involved in Cell-extracellular matrix interactions |