PRJNA207719: Tissue specific transcriptome profiling
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
hoxc9a | dr11_v1_chr23_+_36095260_36095260 | -0.51 | 3.8e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr8_+_47633438 Show fit | 2.65 |
ENSDART00000139096
|
si:ch211-251b21.1 |
|
chr8_+_16004154 Show fit | 2.47 |
ENSDART00000134787
ENSDART00000172510 ENSDART00000141173 |
ELAV like neuron-specific RNA binding protein 4 |
|
chr17_+_23300827 Show fit | 2.18 |
ENSDART00000058745
|
zgc:165461 |
|
chr15_+_8043751 Show fit | 2.03 |
ENSDART00000193701
|
cell adhesion molecule 2b |
|
chr8_+_22931427 Show fit | 1.90 |
ENSDART00000063096
|
synaptophysin a |
|
chr25_-_13842618 Show fit | 1.67 |
ENSDART00000160258
|
mitogen-activated protein kinase 8 interacting protein 1a |
|
chr10_+_26571174 Show fit | 1.66 |
ENSDART00000148617
ENSDART00000112956 |
solute carrier family 9, subfamily A (NHE6, cation proton antiporter 6), member 6b |
|
chr3_+_34821327 Show fit | 1.58 |
ENSDART00000055262
|
cyclin-dependent kinase 5, regulatory subunit 1a (p35) |
|
chr10_-_19801821 Show fit | 1.56 |
ENSDART00000148013
|
GDNF family receptor alpha 2b |
|
chr4_+_10017049 Show fit | 1.48 |
ENSDART00000144175
|
coiled-coil domain containing 136b |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.8 | GO:0018105 | peptidyl-serine phosphorylation(GO:0018105) |
0.0 | 3.9 | GO:0035249 | synaptic transmission, glutamatergic(GO:0035249) |
0.0 | 2.0 | GO:0021782 | glial cell development(GO:0021782) |
0.1 | 1.8 | GO:0030032 | lamellipodium assembly(GO:0030032) |
0.2 | 1.7 | GO:0097369 | sodium ion import(GO:0097369) sodium ion import across plasma membrane(GO:0098719) sodium ion import into cell(GO:1990118) |
0.0 | 1.7 | GO:0046328 | regulation of JNK cascade(GO:0046328) |
0.1 | 1.6 | GO:0035622 | intrahepatic bile duct development(GO:0035622) |
0.1 | 1.5 | GO:2000054 | negative regulation of Wnt signaling pathway involved in dorsal/ventral axis specification(GO:2000054) |
0.3 | 1.4 | GO:0001774 | microglial cell activation(GO:0001774) regulation of cytokine activity(GO:0060300) regulation of receptor binding(GO:1900120) regulation of chemokine activity(GO:1900136) |
0.2 | 1.4 | GO:0021767 | mammillary body development(GO:0021767) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.8 | 3.3 | GO:0032983 | kainate selective glutamate receptor complex(GO:0032983) |
0.1 | 2.5 | GO:0043204 | perikaryon(GO:0043204) |
0.0 | 2.0 | GO:0048786 | presynaptic active zone(GO:0048786) |
0.0 | 1.7 | GO:0055037 | recycling endosome(GO:0055037) |
0.3 | 1.6 | GO:0016533 | cyclin-dependent protein kinase 5 holoenzyme complex(GO:0016533) |
0.0 | 1.4 | GO:0097517 | stress fiber(GO:0001725) contractile actin filament bundle(GO:0097517) |
0.1 | 1.3 | GO:0098982 | GABA-ergic synapse(GO:0098982) |
0.1 | 0.7 | GO:0008250 | oligosaccharyltransferase complex(GO:0008250) |
0.1 | 0.6 | GO:0031258 | lamellipodium membrane(GO:0031258) |
0.0 | 0.6 | GO:0005849 | mRNA cleavage factor complex(GO:0005849) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.8 | 3.3 | GO:0015277 | kainate selective glutamate receptor activity(GO:0015277) |
0.0 | 2.2 | GO:0019838 | growth factor binding(GO:0019838) |
0.0 | 1.9 | GO:0017075 | syntaxin-1 binding(GO:0017075) |
0.2 | 1.7 | GO:0015385 | monovalent cation:proton antiporter activity(GO:0005451) sodium:proton antiporter activity(GO:0015385) potassium:proton antiporter activity(GO:0015386) |
0.1 | 1.6 | GO:0061575 | cyclin-dependent protein serine/threonine kinase activator activity(GO:0061575) |
0.4 | 1.3 | GO:0005252 | open rectifier potassium channel activity(GO:0005252) |
0.1 | 1.3 | GO:0098882 | structural constituent of presynaptic active zone(GO:0098882) |
0.0 | 1.3 | GO:0003697 | single-stranded DNA binding(GO:0003697) |
0.0 | 1.1 | GO:0004683 | calmodulin-dependent protein kinase activity(GO:0004683) |
0.0 | 0.9 | GO:0004707 | MAP kinase activity(GO:0004707) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.4 | PID IL8 CXCR1 PATHWAY | IL8- and CXCR1-mediated signaling events |
0.0 | 0.7 | ST WNT CA2 CYCLIC GMP PATHWAY | Wnt/Ca2+/cyclic GMP signaling. |
0.0 | 0.6 | PID ECADHERIN STABILIZATION PATHWAY | Stabilization and expansion of the E-cadherin adherens junction |
0.0 | 0.4 | PID WNT CANONICAL PATHWAY | Canonical Wnt signaling pathway |
0.0 | 0.3 | PID EPHA FWDPATHWAY | EPHA forward signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.4 | REACTOME ACTIVATED NOTCH1 TRANSMITS SIGNAL TO THE NUCLEUS | Genes involved in Activated NOTCH1 Transmits Signal to the Nucleus |
0.1 | 0.8 | REACTOME SYNTHESIS OF VERY LONG CHAIN FATTY ACYL COAS | Genes involved in Synthesis of very long-chain fatty acyl-CoAs |
0.0 | 0.7 | REACTOME IONOTROPIC ACTIVITY OF KAINATE RECEPTORS | Genes involved in Ionotropic activity of Kainate Receptors |
0.0 | 0.6 | REACTOME DARPP 32 EVENTS | Genes involved in DARPP-32 events |
0.0 | 0.6 | REACTOME PROCESSING OF INTRONLESS PRE MRNAS | Genes involved in Processing of Intronless Pre-mRNAs |
0.0 | 0.4 | REACTOME HYALURONAN UPTAKE AND DEGRADATION | Genes involved in Hyaluronan uptake and degradation |
0.0 | 0.4 | REACTOME RETROGRADE NEUROTROPHIN SIGNALLING | Genes involved in Retrograde neurotrophin signalling |