PRJNA207719: Tissue specific transcriptome profiling

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
hoxa11a Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000104162	homeobox A11a

Gene	Promoter	Pearson corr. coef.	P-value	Plot
hoxa11a	dr11_v1_chr19_+_19737214_19737300	-0.69	2.0e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr4_-_9586713 Show fit	0.21	ENSDART00000145613	shank3b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	SH3 and multiple ankyrin repeat domains 3b
chr7_+_31879649 Show fit	0.21	ENSDART00000099789	mybpc3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	myosin binding protein C, cardiac
chr8_-_14049404 Show fit	0.21	ENSDART00000093117	atp2b3a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ATPase plasma membrane Ca2+ transporting 3a
chr7_+_31879986 Show fit	0.19	ENSDART00000138491	mybpc3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	myosin binding protein C, cardiac
chr10_+_33990572 Show fit	0.17	ENSDART00000138547	fryb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	furry homolog b (Drosophila)
chr6_-_40744720 Show fit	0.14	ENSDART00000154916 ENSDART00000186922	p4htm Links NCBI UniProt ZFIN ENSEMBL Google Show fit	prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)
chr7_+_20524064 Show fit	0.13	ENSDART00000052917	slc3a2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	solute carrier family 3 (amino acid transporter heavy chain), member 2a
chr7_+_20966434 Show fit	0.13	ENSDART00000185570	efnb3b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ephrin-B3b
chr18_+_18000887 Show fit	0.13	ENSDART00000147797	si:ch211-212o1.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-212o1.2
chr12_+_33361948 Show fit	0.10	ENSDART00000124982	fasn Links NCBI UniProt ZFIN ENSEMBL Google Show fit	fatty acid synthase
chr14_-_31060082 Show fit	0.10	ENSDART00000111601 ENSDART00000161113	mbnl3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	muscleblind-like splicing regulator 3
chr22_+_10646928 Show fit	0.09	ENSDART00000038465	rassf1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Ras association (RalGDS/AF-6) domain family 1
chr16_-_6205790 Show fit	0.08	ENSDART00000038495	ctnnb1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	catenin (cadherin-associated protein), beta 1
chr5_+_36611128 Show fit	0.08	ENSDART00000097684	nova1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	neuro-oncological ventral antigen 1
chr4_-_20108833 Show fit	0.08	ENSDART00000100867	fam3c Links NCBI UniProt ZFIN ENSEMBL Google Show fit	family with sequence similarity 3, member C
chr12_-_26851726 Show fit	0.08	ENSDART00000047724	zeb1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zinc finger E-box binding homeobox 1b
chr24_+_21540842 Show fit	0.08	ENSDART00000091529	wasf3b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	WAS protein family, member 3b
chr6_-_53334259 Show fit	0.08	ENSDART00000172465	gnb1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	guanine nucleotide binding protein (G protein), beta polypeptide 1b
chr3_-_27868183 Show fit	0.08	ENSDART00000185812	abat Links NCBI UniProt ZFIN ENSEMBL Google Show fit	4-aminobutyrate aminotransferase
chr24_-_40009446 Show fit	0.07	ENSDART00000087422	aoc1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	amine oxidase, copper containing 1
chr20_-_44576949 Show fit	0.07	ENSDART00000148639	ubxn2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	UBX domain protein 2A
chr25_-_18002937 Show fit	0.07	ENSDART00000149696	cep290 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	centrosomal protein 290
chr9_-_3671911 Show fit	0.07	ENSDART00000102900	sp5a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Sp5 transcription factor a
chr5_-_35301800 Show fit	0.07	ENSDART00000085142	map1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	microtubule-associated protein 1B
chr11_-_26832685 Show fit	0.07	ENSDART00000153519	iqsec1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	IQ motif and Sec7 domain 1b
chr22_-_10502780 Show fit	0.07	ENSDART00000136961	ecm2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	extracellular matrix protein 2, female organ and adipocyte specific
chr14_-_48348973 Show fit	0.06	ENSDART00000185822	CABZ01080056.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr2_-_13254821 Show fit	0.06	ENSDART00000022621	kdsr Links NCBI UniProt ZFIN ENSEMBL Google Show fit	3-ketodihydrosphingosine reductase
chr9_-_23922011 Show fit	0.06	ENSDART00000145734	col6a3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	collagen, type VI, alpha 3
chr5_+_59397348 Show fit	0.06	ENSDART00000175642	clip2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	CAP-GLY domain containing linker protein 2
chr18_+_40993369 Show fit	0.06	ENSDART00000141162	si:dkey-283j8.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-283j8.1
chr5_-_32489796 Show fit	0.06	ENSDART00000168870	gpr107 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	G protein-coupled receptor 107
chr3_+_36284986 Show fit	0.05	ENSDART00000059533	wipi1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	WD repeat domain, phosphoinositide interacting 1
chr17_-_23727978 Show fit	0.05	ENSDART00000079600	minpp1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	multiple inositol-polyphosphate phosphatase 1a
chr25_-_18002498 Show fit	0.05	ENSDART00000158688	cep290 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	centrosomal protein 290
chr3_+_24190207 Show fit	0.05	ENSDART00000034762	prr15la Links NCBI UniProt ZFIN ENSEMBL Google Show fit	proline rich 15-like a
chr4_+_39368978 Show fit	0.05	ENSDART00000160640	si:dkey-261o4.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-261o4.1
chr15_+_36115955 Show fit	0.05	ENSDART00000032702	sst1.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	somatostatin 1, tandem duplicate 2
chr5_+_59397739 Show fit	0.05	ENSDART00000148659	clip2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	CAP-GLY domain containing linker protein 2
chr2_-_13254594 Show fit	0.05	ENSDART00000155671	kdsr Links NCBI UniProt ZFIN ENSEMBL Google Show fit	3-ketodihydrosphingosine reductase
chr16_-_24561354 Show fit	0.05	ENSDART00000193278 ENSDART00000126274	si:ch211-79k12.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-79k12.2
chr15_+_8767650 Show fit	0.04	ENSDART00000033871	ap2s1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	adaptor-related protein complex 2, sigma 1 subunit
chr18_-_2433011 Show fit	0.04	ENSDART00000181922 ENSDART00000193276	CR769778.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr2_-_43851915 Show fit	0.04	ENSDART00000146493	zeb1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zinc finger E-box binding homeobox 1a
chr11_+_43751263 Show fit	0.04	ENSDART00000163843	zgc:153431 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:153431
chr22_+_2239974 Show fit	0.04	ENSDART00000141993	znf1144 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zinc finger protein 1144
chr7_-_43840418 Show fit	0.04	ENSDART00000174592	cdh11 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cadherin 11, type 2, OB-cadherin (osteoblast)
chr2_-_43852207 Show fit	0.04	ENSDART00000192627	zeb1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zinc finger E-box binding homeobox 1a
chr12_-_34713690 Show fit	0.03	ENSDART00000180807	bahcc1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	BAH domain and coiled-coil containing 1b
chr15_+_44093286 Show fit	0.03	ENSDART00000114352	zgc:112998 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:112998
chr7_-_18508815 Show fit	0.03	ENSDART00000173539	rgs12a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	regulator of G protein signaling 12a
chr13_-_9875538 Show fit	0.03	ENSDART00000041609	tm9sf3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transmembrane 9 superfamily member 3
chr1_+_36722122 Show fit	0.03	ENSDART00000111566	tmem184c Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transmembrane protein 184C
chr3_-_40254634 Show fit	0.03	ENSDART00000154562	top3a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	DNA topoisomerase III alpha
chr10_-_25561751 Show fit	0.03	ENSDART00000147089	grik1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	glutamate receptor, ionotropic, kainate 1a
chr7_-_30280934 Show fit	0.03	ENSDART00000126741	serf2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	small EDRK-rich factor 2
chr22_-_33916620 Show fit	0.03	ENSDART00000191276	CR974456.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr7_-_41014773 Show fit	0.03	ENSDART00000013785	insig1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	insulin induced gene 1
chr2_-_9259283 Show fit	0.03	ENSDART00000133092	st6galnac5a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5a
chr6_+_33885828 Show fit	0.02	ENSDART00000179994	gpbp1l1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	GC-rich promoter binding protein 1-like 1
chr6_+_49551614 Show fit	0.02	ENSDART00000022581	rab22a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	RAB22A, member RAS oncogene family
chr5_-_31856681 Show fit	0.02	ENSDART00000187817	pkn3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	protein kinase N3
chr25_-_19395156 Show fit	0.02	ENSDART00000155335	map1ab Links NCBI UniProt ZFIN ENSEMBL Google Show fit	microtubule-associated protein 1Ab
chr24_-_31223232 Show fit	0.02	ENSDART00000164155	alg14 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ALG14, UDP-N-acetylglucosaminyltransferase subunit
chr13_+_35472803 Show fit	0.02	ENSDART00000011583	mkks Links NCBI UniProt ZFIN ENSEMBL Google Show fit	McKusick-Kaufman syndrome
chr24_+_20658760 Show fit	0.02	ENSDART00000188362	sec22c Links NCBI UniProt ZFIN ENSEMBL Google Show fit	SEC22 homolog C, vesicle trafficking protein
chr16_-_47426482 Show fit	0.02	ENSDART00000148631 ENSDART00000149723	sept7b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	septin 7b
chr11_+_25560632 Show fit	0.01	ENSDART00000033914	mbd1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	methyl-CpG binding domain protein 1b
chr18_+_40993196 Show fit	0.01	ENSDART00000115111	si:dkey-283j8.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-283j8.1
chr25_+_3788443 Show fit	0.01	ENSDART00000189747	chid1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	chitinase domain containing 1
chr24_+_20658942 Show fit	0.01	ENSDART00000142848	sec22c Links NCBI UniProt ZFIN ENSEMBL Google Show fit	SEC22 homolog C, vesicle trafficking protein
chr17_+_4368859 Show fit	0.01	ENSDART00000055385	crls1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cardiolipin synthase 1
chr12_-_11560794 Show fit	0.01	ENSDART00000149098 ENSDART00000169975	plekha1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1b
chr7_-_30624435 Show fit	0.01	ENSDART00000173828	rnf111 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ring finger protein 111
chr11_+_25560072 Show fit	0.01	ENSDART00000124131 ENSDART00000147179	mbd1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	methyl-CpG binding domain protein 1b
chr16_-_10316359 Show fit	0.01	ENSDART00000104025	flot1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	flotillin 1b
chr9_-_29039506 Show fit	0.01	ENSDART00000100744	tmem177 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transmembrane protein 177
chr13_+_45431660 Show fit	0.01	ENSDART00000099950	syf2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	SYF2 pre-mRNA-splicing factor
chr11_-_21303946 Show fit	0.01	ENSDART00000185786	RASSF5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-85p17.3
chr13_+_29925397 Show fit	0.00	ENSDART00000123482	cuedc2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	CUE domain containing 2
chr15_-_14552101 Show fit	0.00	ENSDART00000171169	numbl Links NCBI UniProt ZFIN ENSEMBL Google Show fit	numb homolog (Drosophila)-like
chr17_+_44463230 Show fit	0.00	ENSDART00000130311	naa30 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	N(alpha)-acetyltransferase 30, NatC catalytic subunit
chr6_+_3730843 Show fit	0.00	ENSDART00000019630	FO704755.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr18_-_17087138 Show fit	0.00	ENSDART00000135597	zc3h18 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zinc finger CCCH-type containing 18

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.4	GO:0003210	cardiac atrium formation(GO:0003210)
0.0	0.2	GO:0070587	regulation of cell-cell adhesion involved in gastrulation(GO:0070587)
0.0	0.2	GO:2000463	postsynaptic density assembly(GO:0097107) modulation of excitatory postsynaptic potential(GO:0098815) positive regulation of excitatory postsynaptic potential(GO:2000463)
0.0	0.1	GO:2000055	positive regulation of Wnt signaling pathway involved in dorsal/ventral axis specification(GO:2000055)
0.0	0.1	GO:0030220	platelet formation(GO:0030220) platelet morphogenesis(GO:0036344)
0.0	0.1	GO:0042769	DNA damage response, detection of DNA damage(GO:0042769)
0.0	0.1	GO:0009450	gamma-aminobutyric acid catabolic process(GO:0009450)
0.0	0.1	GO:0046677	response to antibiotic(GO:0046677)
0.0	0.1	GO:0045721	negative regulation of gluconeogenesis(GO:0045721)
0.0	0.1	GO:0060142	regulation of syncytium formation by plasma membrane fusion(GO:0060142)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0005913	cell-cell adherens junction(GO:0005913) zonula adherens(GO:0005915)
0.0	0.1	GO:0034451	centriolar satellite(GO:0034451)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.4	GO:0032036	myosin heavy chain binding(GO:0032036)
0.0	0.2	GO:0030160	GKAP/Homer scaffold activity(GO:0030160)
0.0	0.1	GO:0070052	collagen V binding(GO:0070052)
0.0	0.1	GO:0008131	primary amine oxidase activity(GO:0008131)
0.0	0.1	GO:0034416	bisphosphoglycerate phosphatase activity(GO:0034416)
0.0	0.1	GO:0004656	procollagen-proline 4-dioxygenase activity(GO:0004656)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	REACTOME APOPTOTIC CLEAVAGE OF CELL ADHESION PROTEINS	Genes involved in Apoptotic cleavage of cell adhesion proteins