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PRJNA207719: Tissue specific transcriptome profiling
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Results for gsc
Z-value: 0.45
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Transcription factors associated with gsc
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| gsc | dr11_v1_chr17_-_19344999_19344999 | 0.65 | 2.3e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chrM_+_12897 Show fit | 0.29 |
ENSDART00000093622
|
NADH dehydrogenase 5, mitochondrial |
|
| chr18_+_49969568 Show fit | 0.25 |
ENSDART00000126916
|
MOB kinase activator 2b |
|
| chr14_-_36378494 Show fit | 0.25 |
ENSDART00000058503
|
glycoprotein M6Aa |
|
| chr17_+_35097024 Show fit | 0.23 |
ENSDART00000026152
|
ArfGAP with SH3 domain, ankyrin repeat and PH domain 2a |
|
| chr6_-_35401282 Show fit | 0.20 |
ENSDART00000127612
|
regulator of G protein signaling 5a |
|
| chr25_-_27819838 Show fit | 0.19 |
ENSDART00000067106
|
leiomodin 2 (cardiac) a |
|
| chr22_+_34701848 Show fit | 0.18 |
ENSDART00000082066
|
ATPase H+ transporting V0 subunit e2 |
|
| chr8_-_25814263 Show fit | 0.16 |
ENSDART00000143397
|
TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor |
|
| chr19_+_24882845 Show fit | 0.16 |
ENSDART00000010580
|
si:ch211-195b13.1 |
|
| chr19_-_41069573 Show fit | 0.15 |
ENSDART00000111982
ENSDART00000193142 |
sarcoglycan, epsilon |
Network of associatons between targets according to the STRING database.
First level regulatory network of gsc
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.3 | GO:0015990 | energy coupled proton transmembrane transport, against electrochemical gradient(GO:0015988) electron transport coupled proton transport(GO:0015990) |
| 0.0 | 0.2 | GO:0003261 | cardiac muscle progenitor cell migration to the midline involved in heart field formation(GO:0003261) |
| 0.0 | 0.2 | GO:0051694 | pointed-end actin filament capping(GO:0051694) |
| 0.0 | 0.1 | GO:0003408 | optic cup formation involved in camera-type eye development(GO:0003408) spinal cord association neuron specification(GO:0021519) |
| 0.0 | 0.1 | GO:1903428 | regulation of nitric oxide biosynthetic process(GO:0045428) positive regulation of nitric oxide biosynthetic process(GO:0045429) positive regulation of reactive oxygen species biosynthetic process(GO:1903428) positive regulation of nitric oxide metabolic process(GO:1904407) |
| 0.0 | 0.1 | GO:0061181 | regulation of chondrocyte development(GO:0061181) |
| 0.0 | 0.1 | GO:0016056 | rhodopsin mediated signaling pathway(GO:0016056) |
| 0.0 | 0.1 | GO:0035608 | protein deglutamylation(GO:0035608) |
| 0.0 | 0.1 | GO:0010332 | response to gamma radiation(GO:0010332) cellular response to gamma radiation(GO:0071480) |
| 0.0 | 0.1 | GO:0045898 | regulation of RNA polymerase II transcriptional preinitiation complex assembly(GO:0045898) positive regulation of RNA polymerase II transcriptional preinitiation complex assembly(GO:0045899) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.2 | GO:0016012 | sarcoglycan complex(GO:0016012) |
| 0.0 | 0.2 | GO:0044295 | axonal growth cone(GO:0044295) |
| 0.0 | 0.2 | GO:0033179 | proton-transporting V-type ATPase, V0 domain(GO:0033179) |
| 0.0 | 0.1 | GO:0034464 | BBSome(GO:0034464) |
| 0.0 | 0.1 | GO:0042622 | photoreceptor outer segment membrane(GO:0042622) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.3 | GO:0005523 | tropomyosin binding(GO:0005523) |
| 0.0 | 0.3 | GO:0050136 | NADH dehydrogenase (ubiquinone) activity(GO:0008137) NADH dehydrogenase (quinone) activity(GO:0050136) |
| 0.0 | 0.2 | GO:0080019 | fatty-acyl-CoA reductase (alcohol-forming) activity(GO:0080019) |
| 0.0 | 0.2 | GO:0005161 | platelet-derived growth factor receptor binding(GO:0005161) |
| 0.0 | 0.1 | GO:0005547 | phosphatidylinositol-3,4,5-trisphosphate binding(GO:0005547) |
| 0.0 | 0.1 | GO:0003994 | aconitate hydratase activity(GO:0003994) |
| 0.0 | 0.1 | GO:0005502 | 11-cis retinal binding(GO:0005502) |
| 0.0 | 0.1 | GO:0070004 | cysteine-type exopeptidase activity(GO:0070004) |
| 0.0 | 0.1 | GO:0036402 | proteasome-activating ATPase activity(GO:0036402) |
| 0.0 | 0.1 | GO:0015018 | galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity(GO:0015018) |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | REACTOME ACETYLCHOLINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Acetylcholine Neurotransmitter Release Cycle |
| 0.0 | 0.1 | REACTOME SYNTHESIS OF PIPS AT THE LATE ENDOSOME MEMBRANE | Genes involved in Synthesis of PIPs at the late endosome membrane |