PRJNA207719: Tissue specific transcriptome profiling
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
foxc1a | dr11_v1_chr2_-_689047_689047 | -0.22 | 7.3e-01 | Click! |
foxc1b | dr11_v1_chr20_+_26702377_26702377 | -0.06 | 9.2e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr11_+_11200550 Show fit | 1.20 |
ENSDART00000181339
ENSDART00000187116 |
myomesin 2a |
|
chr1_-_45177373 Show fit | 1.12 |
ENSDART00000143142
ENSDART00000034549 |
zgc:111983 |
|
chr22_+_20720808 Show fit | 0.97 |
ENSDART00000171321
|
si:dkey-211f22.5 |
|
chr1_+_7540978 Show fit | 0.85 |
ENSDART00000147770
|
myosin, light polypeptide 3, skeletal muscle |
|
chr12_-_26064105 Show fit | 0.82 |
ENSDART00000168825
|
LIM domain binding 3b |
|
chr12_-_26064480 Show fit | 0.80 |
ENSDART00000158215
ENSDART00000171206 ENSDART00000171212 ENSDART00000182956 ENSDART00000186779 |
LIM domain binding 3b |
|
chr18_-_16792561 Show fit | 0.79 |
ENSDART00000145546
|
adenosine monophosphate deaminase 3b |
|
chr20_-_27311675 Show fit | 0.75 |
ENSDART00000026088
ENSDART00000148361 |
ankyrin repeat and SOCS box containing 2a, tandem duplicate 1 |
|
chr24_-_40726073 Show fit | 0.70 |
ENSDART00000168100
|
slow myosin heavy chain 2 |
|
chr12_+_20641471 Show fit | 0.67 |
ENSDART00000133654
|
calcium binding and coiled-coil domain 2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.8 | GO:0032264 | IMP salvage(GO:0032264) |
0.1 | 0.7 | GO:0031444 | slow-twitch skeletal muscle fiber contraction(GO:0031444) |
0.2 | 0.6 | GO:0061341 | non-canonical Wnt signaling pathway involved in heart development(GO:0061341) |
0.1 | 0.6 | GO:2000660 | regulation of interleukin-1-mediated signaling pathway(GO:2000659) negative regulation of interleukin-1-mediated signaling pathway(GO:2000660) |
0.1 | 0.6 | GO:0097369 | sodium ion import(GO:0097369) sodium ion import across plasma membrane(GO:0098719) sodium ion import into cell(GO:1990118) |
0.0 | 0.6 | GO:0030199 | collagen fibril organization(GO:0030199) |
0.0 | 0.6 | GO:0030968 | endoplasmic reticulum unfolded protein response(GO:0030968) |
0.0 | 0.6 | GO:0000187 | activation of MAPK activity(GO:0000187) |
0.1 | 0.5 | GO:0086009 | membrane repolarization(GO:0086009) |
0.1 | 0.4 | GO:0050891 | multicellular organismal water homeostasis(GO:0050891) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.6 | GO:0031941 | filamentous actin(GO:0031941) |
0.1 | 1.2 | GO:0031430 | M band(GO:0031430) |
0.1 | 0.6 | GO:0031526 | brush border membrane(GO:0031526) |
0.1 | 0.5 | GO:0005588 | collagen type V trimer(GO:0005588) |
0.0 | 0.4 | GO:0016328 | lateral plasma membrane(GO:0016328) |
0.1 | 0.3 | GO:0061702 | inflammasome complex(GO:0061702) |
0.1 | 0.3 | GO:0018444 | translation release factor complex(GO:0018444) |
0.0 | 0.3 | GO:0030428 | cell septum(GO:0030428) |
0.0 | 0.3 | GO:0016282 | eukaryotic 43S preinitiation complex(GO:0016282) |
0.0 | 0.2 | GO:0043020 | NADPH oxidase complex(GO:0043020) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.6 | GO:0051371 | muscle alpha-actinin binding(GO:0051371) alpha-actinin binding(GO:0051393) |
0.1 | 0.8 | GO:0047623 | AMP deaminase activity(GO:0003876) adenosine-phosphate deaminase activity(GO:0047623) |
0.1 | 0.6 | GO:0048019 | receptor antagonist activity(GO:0048019) |
0.1 | 0.6 | GO:0015386 | monovalent cation:proton antiporter activity(GO:0005451) sodium:proton antiporter activity(GO:0015385) potassium:proton antiporter activity(GO:0015386) |
0.0 | 0.6 | GO:0004708 | MAP kinase kinase activity(GO:0004708) |
0.1 | 0.5 | GO:0016286 | small conductance calcium-activated potassium channel activity(GO:0016286) |
0.0 | 0.5 | GO:0005332 | gamma-aminobutyric acid:sodium symporter activity(GO:0005332) |
0.0 | 0.5 | GO:0033691 | sialic acid binding(GO:0033691) |
0.0 | 0.5 | GO:0022848 | acetylcholine-gated cation channel activity(GO:0022848) |
0.0 | 0.5 | GO:0005518 | collagen binding(GO:0005518) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.7 | NABA COLLAGENS | Genes encoding collagen proteins |
0.1 | 0.6 | SA MMP CYTOKINE CONNECTION | Cytokines can induce activation of matrix metalloproteinases, which degrade extracellular matrix. |
0.0 | 0.6 | PID ERBB2 ERBB3 PATHWAY | ErbB2/ErbB3 signaling events |
0.0 | 0.4 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.0 | 0.3 | SIG BCR SIGNALING PATHWAY | Members of the BCR signaling pathway |
0.0 | 0.2 | PID AR NONGENOMIC PATHWAY | Nongenotropic Androgen signaling |
0.0 | 0.2 | PID IL12 STAT4 PATHWAY | IL12 signaling mediated by STAT4 |
0.0 | 0.1 | PID ERBB NETWORK PATHWAY | ErbB receptor signaling network |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.7 | REACTOME COLLAGEN FORMATION | Genes involved in Collagen formation |
0.0 | 0.6 | REACTOME IL1 SIGNALING | Genes involved in Interleukin-1 signaling |
0.1 | 0.5 | REACTOME PRESYNAPTIC NICOTINIC ACETYLCHOLINE RECEPTORS | Genes involved in Presynaptic nicotinic acetylcholine receptors |
0.0 | 0.3 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS VIA 7ALPHA HYDROXYCHOLESTEROL | Genes involved in Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol |
0.0 | 0.3 | REACTOME PHOSPHORYLATION OF CD3 AND TCR ZETA CHAINS | Genes involved in Phosphorylation of CD3 and TCR zeta chains |
0.0 | 0.3 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
0.0 | 0.2 | REACTOME CD28 DEPENDENT VAV1 PATHWAY | Genes involved in CD28 dependent Vav1 pathway |
0.0 | 0.2 | REACTOME NFKB ACTIVATION THROUGH FADD RIP1 PATHWAY MEDIATED BY CASPASE 8 AND10 | Genes involved in NF-kB activation through FADD/RIP-1 pathway mediated by caspase-8 and -10 |
0.0 | 0.2 | REACTOME ASSOCIATION OF LICENSING FACTORS WITH THE PRE REPLICATIVE COMPLEX | Genes involved in Association of licensing factors with the pre-replicative complex |
0.0 | 0.1 | REACTOME RECYCLING OF BILE ACIDS AND SALTS | Genes involved in Recycling of bile acids and salts |