PRJNA207719: Tissue specific transcriptome profiling
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
si:ch211-153j24.3 | dr11_v1_chr20_+_46544052_46544052 | -0.97 | 6.7e-03 | Click! |
fosb | dr11_v1_chr18_+_36770166_36770166 | -0.89 | 4.2e-02 | Click! |
fosl2 | dr11_v1_chr17_+_41302660_41302660 | -0.76 | 1.4e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr11_-_18253111 Show fit | 1.01 |
ENSDART00000125984
|
musculoskeletal, embryonic nuclear protein 1b |
|
chr25_-_13408760 Show fit | 0.96 |
ENSDART00000154445
|
GINS complex subunit 3 |
|
chr19_+_48359259 Show fit | 0.91 |
ENSDART00000167353
|
shugoshin 1 |
|
chr25_-_22187397 Show fit | 0.82 |
ENSDART00000123211
ENSDART00000139110 |
plakophilin 3a |
|
chr12_+_25945560 Show fit | 0.80 |
ENSDART00000109799
|
multimerin 2b |
|
chr13_+_24280380 Show fit | 0.75 |
ENSDART00000184115
|
actin, alpha 1b, skeletal muscle |
|
chr21_-_2415808 Show fit | 0.72 |
ENSDART00000171179
|
si:ch211-241b2.5 |
|
chr6_-_35439406 Show fit | 0.70 |
ENSDART00000073784
|
regulator of G protein signaling 5a |
|
chr16_-_22930925 Show fit | 0.67 |
ENSDART00000133819
|
si:dkey-246i14.3 |
|
chr25_+_13191391 Show fit | 0.67 |
ENSDART00000109937
|
si:ch211-147m6.2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 1.0 | GO:0035988 | chondrocyte proliferation(GO:0035988) |
0.1 | 1.0 | GO:1902975 | cell cycle DNA replication initiation(GO:1902292) nuclear cell cycle DNA replication initiation(GO:1902315) mitotic DNA replication initiation(GO:1902975) |
0.0 | 1.0 | GO:0006910 | phagocytosis, recognition(GO:0006910) |
0.0 | 1.0 | GO:0019722 | calcium-mediated signaling(GO:0019722) |
0.2 | 0.9 | GO:0071962 | mitotic sister chromatid cohesion, centromeric(GO:0071962) |
0.0 | 0.8 | GO:0061318 | renal filtration cell differentiation(GO:0061318) glomerular epithelium development(GO:0072010) glomerular visceral epithelial cell differentiation(GO:0072112) glomerular epithelial cell differentiation(GO:0072311) |
0.1 | 0.7 | GO:0001765 | membrane raft assembly(GO:0001765) plasma membrane raft assembly(GO:0044854) plasma membrane raft organization(GO:0044857) caveola assembly(GO:0070836) |
0.1 | 0.7 | GO:0031294 | lymphocyte costimulation(GO:0031294) T cell costimulation(GO:0031295) |
0.0 | 0.7 | GO:0035999 | tetrahydrofolate interconversion(GO:0035999) |
0.0 | 0.6 | GO:0051121 | lipoxygenase pathway(GO:0019372) linoleic acid metabolic process(GO:0043651) hepoxilin metabolic process(GO:0051121) hepoxilin biosynthetic process(GO:0051122) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.7 | GO:0030057 | desmosome(GO:0030057) |
0.2 | 1.0 | GO:0000811 | GINS complex(GO:0000811) |
0.0 | 1.0 | GO:0042571 | immunoglobulin complex, circulating(GO:0042571) |
0.0 | 0.9 | GO:0005901 | caveola(GO:0005901) plasma membrane raft(GO:0044853) |
0.0 | 0.8 | GO:0005869 | dynactin complex(GO:0005869) |
0.0 | 0.6 | GO:0002102 | podosome(GO:0002102) |
0.0 | 0.5 | GO:0016328 | lateral plasma membrane(GO:0016328) |
0.1 | 0.4 | GO:0016234 | inclusion body(GO:0016234) |
0.1 | 0.3 | GO:0030289 | protein phosphatase 4 complex(GO:0030289) |
0.0 | 0.3 | GO:0014704 | intercalated disc(GO:0014704) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.6 | GO:0045296 | cadherin binding(GO:0045296) |
0.0 | 1.0 | GO:0034987 | immunoglobulin receptor binding(GO:0034987) |
0.0 | 0.9 | GO:1990841 | promoter-specific chromatin binding(GO:1990841) |
0.0 | 0.9 | GO:0019957 | C-C chemokine binding(GO:0019957) |
0.0 | 0.8 | GO:0048306 | calcium-dependent protein binding(GO:0048306) |
0.1 | 0.7 | GO:0004329 | formate-tetrahydrofolate ligase activity(GO:0004329) |
0.1 | 0.6 | GO:0004051 | arachidonate 5-lipoxygenase activity(GO:0004051) |
0.1 | 0.6 | GO:0004046 | aminoacylase activity(GO:0004046) |
0.1 | 0.6 | GO:0047498 | calcium-dependent phospholipase A2 activity(GO:0047498) |
0.0 | 0.6 | GO:0017124 | SH3 domain binding(GO:0017124) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.6 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
0.0 | 0.6 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.0 | 0.5 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
0.0 | 0.3 | PID TOLL ENDOGENOUS PATHWAY | Endogenous TLR signaling |
0.0 | 0.2 | PID THROMBIN PAR4 PATHWAY | PAR4-mediated thrombin signaling events |
0.0 | 0.2 | PID INTEGRIN5 PATHWAY | Beta5 beta6 beta7 and beta8 integrin cell surface interactions |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.5 | REACTOME ACTIVATION OF BH3 ONLY PROTEINS | Genes involved in Activation of BH3-only proteins |
0.0 | 0.4 | REACTOME P2Y RECEPTORS | Genes involved in P2Y receptors |
0.0 | 0.4 | REACTOME SYNTHESIS AND INTERCONVERSION OF NUCLEOTIDE DI AND TRIPHOSPHATES | Genes involved in Synthesis and interconversion of nucleotide di- and triphosphates |
0.0 | 0.3 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS VIA 7ALPHA HYDROXYCHOLESTEROL | Genes involved in Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol |
0.0 | 0.3 | REACTOME MTORC1 MEDIATED SIGNALLING | Genes involved in mTORC1-mediated signalling |
0.0 | 0.3 | REACTOME NFKB IS ACTIVATED AND SIGNALS SURVIVAL | Genes involved in NF-kB is activated and signals survival |
0.0 | 0.3 | REACTOME RNA POL I PROMOTER OPENING | Genes involved in RNA Polymerase I Promoter Opening |
0.0 | 0.3 | REACTOME TRYPTOPHAN CATABOLISM | Genes involved in Tryptophan catabolism |
0.0 | 0.2 | REACTOME PURINE RIBONUCLEOSIDE MONOPHOSPHATE BIOSYNTHESIS | Genes involved in Purine ribonucleoside monophosphate biosynthesis |
0.0 | 0.2 | REACTOME REGULATION OF GENE EXPRESSION IN BETA CELLS | Genes involved in Regulation of gene expression in beta cells |