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PRJNA207719: Tissue specific transcriptome profiling
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Results for dharma
Z-value: 1.28
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Transcription factors associated with dharma
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr1_-_45177373 Show fit | 1.33 |
ENSDART00000143142
ENSDART00000034549 |
zgc:111983 |
|
| chr4_-_8030583 Show fit | 1.16 |
ENSDART00000113628
|
si:ch211-240l19.8 |
|
| chr1_-_45146834 Show fit | 1.04 |
ENSDART00000144997
|
si:ch211-239f4.6 |
|
| chr16_+_23403602 Show fit | 0.99 |
ENSDART00000159848
|
S100 calcium binding protein W |
|
| chr16_+_23404170 Show fit | 0.82 |
ENSDART00000170061
|
S100 calcium binding protein W |
|
| chr5_+_9037650 Show fit | 0.72 |
ENSDART00000158226
|
si:ch211-155m12.1 |
|
| chr23_+_44644911 Show fit | 0.61 |
ENSDART00000140799
|
zgc:85858 |
|
| chr22_+_7462997 Show fit | 0.61 |
ENSDART00000106082
|
zgc:112368 |
|
| chr25_-_37305738 Show fit | 0.60 |
ENSDART00000154185
|
si:dkey-234i14.15 |
|
| chr10_-_45210184 Show fit | 0.58 |
ENSDART00000167128
|
poly (ADP-ribose) glycohydrolase, like |
Network of associatons between targets according to the STRING database.
First level regulatory network of dharma
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.6 | GO:0002377 | immunoglobulin production(GO:0002377) |
| 0.0 | 0.6 | GO:0030968 | endoplasmic reticulum unfolded protein response(GO:0030968) |
| 0.0 | 0.6 | GO:0009225 | nucleotide-sugar metabolic process(GO:0009225) |
| 0.1 | 0.5 | GO:0003261 | cardiac muscle progenitor cell migration to the midline involved in heart field formation(GO:0003261) |
| 0.1 | 0.5 | GO:0006878 | cellular copper ion homeostasis(GO:0006878) |
| 0.0 | 0.5 | GO:0010499 | proteasomal ubiquitin-independent protein catabolic process(GO:0010499) |
| 0.0 | 0.5 | GO:0006383 | transcription from RNA polymerase III promoter(GO:0006383) |
| 0.1 | 0.4 | GO:0065001 | specification of axis polarity(GO:0065001) |
| 0.1 | 0.3 | GO:0030326 | embryonic limb morphogenesis(GO:0030326) |
| 0.1 | 0.3 | GO:0008635 | activation of cysteine-type endopeptidase activity involved in apoptotic process by cytochrome c(GO:0008635) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.3 | GO:0048471 | perinuclear region of cytoplasm(GO:0048471) |
| 0.1 | 0.6 | GO:0098574 | cytoplasmic side of lysosomal membrane(GO:0098574) |
| 0.0 | 0.5 | GO:0005666 | DNA-directed RNA polymerase III complex(GO:0005666) |
| 0.0 | 0.5 | GO:0005839 | proteasome core complex(GO:0005839) |
| 0.0 | 0.3 | GO:0071005 | U2-type precatalytic spliceosome(GO:0071005) |
| 0.0 | 0.2 | GO:0042613 | MHC class II protein complex(GO:0042613) |
| 0.0 | 0.2 | GO:0031307 | integral component of mitochondrial outer membrane(GO:0031307) |
| 0.0 | 0.2 | GO:0005868 | cytoplasmic dynein complex(GO:0005868) |
| 0.0 | 0.1 | GO:0098826 | endoplasmic reticulum tubular network membrane(GO:0098826) |
| 0.0 | 0.1 | GO:0046695 | SLIK (SAGA-like) complex(GO:0046695) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 2.4 | GO:0048306 | calcium-dependent protein binding(GO:0048306) |
| 0.1 | 0.8 | GO:0016530 | metallochaperone activity(GO:0016530) |
| 0.1 | 0.6 | GO:0004649 | poly(ADP-ribose) glycohydrolase activity(GO:0004649) |
| 0.1 | 0.5 | GO:0005161 | platelet-derived growth factor receptor binding(GO:0005161) |
| 0.0 | 0.5 | GO:0070003 | threonine-type endopeptidase activity(GO:0004298) threonine-type peptidase activity(GO:0070003) |
| 0.0 | 0.3 | GO:0004035 | alkaline phosphatase activity(GO:0004035) |
| 0.0 | 0.3 | GO:0000993 | RNA polymerase II core binding(GO:0000993) |
| 0.1 | 0.2 | GO:0004421 | hydroxymethylglutaryl-CoA synthase activity(GO:0004421) |
| 0.0 | 0.2 | GO:0004743 | pyruvate kinase activity(GO:0004743) |
| 0.0 | 0.2 | GO:0070181 | small ribosomal subunit rRNA binding(GO:0070181) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.5 | PID MYC PATHWAY | C-MYC pathway |
| 0.0 | 0.2 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.6 | REACTOME DESTABILIZATION OF MRNA BY AUF1 HNRNP D0 | Genes involved in Destabilization of mRNA by AUF1 (hnRNP D0) |
| 0.0 | 0.5 | REACTOME RNA POL II TRANSCRIPTION PRE INITIATION AND PROMOTER OPENING | Genes involved in RNA Polymerase II Transcription Pre-Initiation And Promoter Opening |
| 0.0 | 0.2 | REACTOME SIGNALING BY HIPPO | Genes involved in Signaling by Hippo |
| 0.0 | 0.1 | REACTOME SYNTHESIS OF PIPS AT THE LATE ENDOSOME MEMBRANE | Genes involved in Synthesis of PIPs at the late endosome membrane |