ISMARA results: bbx

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PRJNA207719: Tissue specific transcriptome profiling

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Results for bbx

Z-value: 0.86

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Transcription factors associated with bbx

Gene Symbol	Gene ID	Gene Info
bbx NCBI UniProt	ENSDARG00000012699	BBX high mobility group box domain containing

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
bbx	dr11_v1_chr10_-_28477023_28477023	0.68	2.1e-01	Click!

Activity profile of bbx motif

Sorted Z-values of bbx motif

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Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr21_-_22648007 Show fit	0.78	ENSDART00000121788	gig2l NCBI UniProt Show fit	grass carp reovirus (GCRV)-induced gene 2l
chr18_+_39060687 Show fit	0.57	ENSDART00000098729 ENSDART00000136367	zgc:171509 NCBI UniProt Show fit	zgc:171509
chr21_-_22647695 Show fit	0.47	ENSDART00000187553	gig2l NCBI UniProt Show fit	grass carp reovirus (GCRV)-induced gene 2l
chr16_+_23403602 Show fit	0.44	ENSDART00000159848	s100w NCBI UniProt Show fit	S100 calcium binding protein W
chr21_-_22678195 Show fit	0.41	ENSDART00000171231	gig2g NCBI UniProt Show fit	grass carp reovirus (GCRV)-induced gene 2g
chr7_+_72003301 Show fit	0.40	ENSDART00000012918 ENSDART00000182268 ENSDART00000185750	psmd9 NCBI UniProt Show fit	proteasome 26S subunit, non-ATPase 9
chr8_-_36469117 Show fit	0.39	ENSDART00000111240	mhc2dab NCBI UniProt Show fit	major histocompatibility complex class II DAB gene
chr16_-_40373836 Show fit	0.32	ENSDART00000134498	si:dkey-242e21.3 NCBI UniProt Show fit	si:dkey-242e21.3
chr3_+_4113551 Show fit	0.31	ENSDART00000192309	LO018551.1 NCBI UniProt Show fit
chr23_+_19670085 Show fit	0.29	ENSDART00000031872	kctd6b NCBI UniProt Show fit	potassium channel tetramerization domain containing 6b

Showing 1 to 10 of 158 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of bbx

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.7	GO:0006189	'de novo' IMP biosynthetic process(GO:0006189)
0.0	0.7	GO:0019882	antigen processing and presentation(GO:0019882)
0.0	0.5	GO:0043248	proteasome assembly(GO:0043248)
0.0	0.3	GO:0006301	postreplication repair(GO:0006301)
0.1	0.2	GO:0036462	TRAIL-activated apoptotic signaling pathway(GO:0036462)
0.0	0.2	GO:0070292	N-acylphosphatidylethanolamine metabolic process(GO:0070292)
0.0	0.2	GO:0036149	phosphatidylinositol acyl-chain remodeling(GO:0036149)
0.0	0.2	GO:0034454	microtubule anchoring at centrosome(GO:0034454)
0.0	0.2	GO:0043201	response to leucine(GO:0043201) cellular response to leucine(GO:0071233) regulation of response to reactive oxygen species(GO:1901031)
0.0	0.2	GO:0008594	photoreceptor cell morphogenesis(GO:0008594) negative regulation of epithelial to mesenchymal transition(GO:0010719)

Showing 1 to 10 of 16 entries

Gene overrepresentation in cellular component category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.7	GO:0042613	MHC class II protein complex(GO:0042613)
0.0	0.3	GO:0031371	ubiquitin conjugating enzyme complex(GO:0031371)
0.0	0.2	GO:0044233	ER-mitochondrion membrane contact site(GO:0044233)
0.0	0.2	GO:0033186	CAF-1 complex(GO:0033186)
0.0	0.2	GO:0033263	CORVET complex(GO:0033263)
0.0	0.2	GO:0061700	GATOR2 complex(GO:0061700)
0.0	0.2	GO:0031680	G-protein beta/gamma-subunit complex(GO:0031680)
0.0	0.1	GO:0097541	axonemal basal plate(GO:0097541)
0.0	0.1	GO:0000015	phosphopyruvate hydratase complex(GO:0000015)
0.0	0.1	GO:0034451	centriolar satellite(GO:0034451)

Showing 1 to 10 of 11 entries

Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	1.7	GO:0003950	NAD+ ADP-ribosyltransferase activity(GO:0003950)
0.1	0.6	GO:0004639	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity(GO:0004639)
0.0	0.4	GO:0048306	calcium-dependent protein binding(GO:0048306)
0.1	0.2	GO:0008970	phosphatidylcholine 1-acylhydrolase activity(GO:0008970)
0.0	0.2	GO:0070728	leucine binding(GO:0070728)
0.0	0.2	GO:0002020	protease binding(GO:0002020)
0.0	0.1	GO:0030882	lipid antigen binding(GO:0030882)
0.0	0.1	GO:0004726	non-membrane spanning protein tyrosine phosphatase activity(GO:0004726)
0.0	0.1	GO:1990247	N6-methyladenosine-containing RNA binding(GO:1990247)
0.0	0.1	GO:0042609	CD4 receptor binding(GO:0042609)

Showing 1 to 10 of 15 entries

Gene overrepresentation in curated gene sets: REACTOME pathways category:

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Total log-likelihood	Term	Description
0.7	REACTOME PURINE RIBONUCLEOSIDE MONOPHOSPHATE BIOSYNTHESIS	Genes involved in Purine ribonucleoside monophosphate biosynthesis
0.2	REACTOME OLFACTORY SIGNALING PATHWAY	Genes involved in Olfactory Signaling Pathway
0.2	REACTOME ACYL CHAIN REMODELLING OF PI	Genes involved in Acyl chain remodelling of PI
0.2	REACTOME EXTRINSIC PATHWAY FOR APOPTOSIS	Genes involved in Extrinsic Pathway for Apoptosis

Showing 1 to 4 of 4 entries

Results for bbx

Z-value: 0.86

Motif logo

Transcription factors associated with bbx

Activity-expression correlation:

Activity profile of bbx motif

Sorted Z-values of bbx motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of bbx

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category:

Gene overrepresentation in curated gene sets: REACTOME pathways category: