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PRJNA207719: Tissue specific transcriptome profiling
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Results for arid5b
Z-value: 0.58
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Transcription factors associated with arid5b
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| arid5b | dr11_v1_chr12_+_8373525_8373525 | -0.88 | 4.7e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr3_+_19299309 Show fit | 0.92 |
ENSDART00000046297
ENSDART00000146955 |
low density lipoprotein receptor a |
|
| chr17_-_2584423 Show fit | 0.43 |
ENSDART00000013506
|
zona pellucida glycoprotein 3, tandem duplicate 2 |
|
| chr11_+_13224281 Show fit | 0.43 |
ENSDART00000102557
ENSDART00000178706 |
ATP-binding cassette, sub-family B (MDR/TAP), member 11b |
|
| chr1_+_10051763 Show fit | 0.41 |
ENSDART00000011701
|
fibrinogen beta chain |
|
| chr17_-_2578026 Show fit | 0.39 |
ENSDART00000065821
|
zona pellucida glycoprotein 3, tandem duplicate 2 |
|
| chr21_-_2322102 Show fit | 0.38 |
ENSDART00000162867
|
zgc:66483 |
|
| chr13_-_4704353 Show fit | 0.36 |
ENSDART00000171900
|
oncoprotein induced transcript 3 |
|
| chr12_-_46252062 Show fit | 0.36 |
ENSDART00000153223
|
si:ch211-226h7.5 |
|
| chr16_-_50175069 Show fit | 0.35 |
ENSDART00000192979
|
lens intrinsic membrane protein 2.5 |
|
| chr7_-_60831082 Show fit | 0.34 |
ENSDART00000073654
ENSDART00000136999 |
pyruvate carboxylase b |
Network of associatons between targets according to the STRING database.
First level regulatory network of arid5b
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.9 | GO:0032367 | intracellular cholesterol transport(GO:0032367) |
| 0.0 | 0.8 | GO:0035036 | binding of sperm to zona pellucida(GO:0007339) sperm-egg recognition(GO:0035036) egg coat formation(GO:0035803) regulation of acrosome reaction(GO:0060046) positive regulation of acrosome reaction(GO:2000344) |
| 0.0 | 0.6 | GO:0048538 | thymus development(GO:0048538) |
| 0.1 | 0.4 | GO:0015722 | canalicular bile acid transport(GO:0015722) bile acid secretion(GO:0032782) |
| 0.0 | 0.4 | GO:0070527 | platelet aggregation(GO:0070527) blood coagulation, fibrin clot formation(GO:0072378) |
| 0.1 | 0.3 | GO:0098535 | de novo centriole assembly(GO:0098535) |
| 0.0 | 0.3 | GO:0006094 | gluconeogenesis(GO:0006094) |
| 0.1 | 0.2 | GO:0007638 | mechanosensory behavior(GO:0007638) |
| 0.0 | 0.2 | GO:0006740 | NADPH regeneration(GO:0006740) |
| 0.0 | 0.2 | GO:0071169 | establishment of protein localization to chromosome(GO:0070199) establishment of protein localization to chromatin(GO:0071169) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.4 | GO:0005577 | fibrinogen complex(GO:0005577) |
| 0.1 | 0.3 | GO:0098536 | deuterosome(GO:0098536) |
| 0.0 | 0.2 | GO:0005784 | Sec61 translocon complex(GO:0005784) |
| 0.0 | 0.2 | GO:0005826 | actomyosin contractile ring(GO:0005826) |
| 0.0 | 0.2 | GO:0031428 | box C/D snoRNP complex(GO:0031428) |
| 0.0 | 0.2 | GO:0000445 | THO complex(GO:0000347) THO complex part of transcription export complex(GO:0000445) |
| 0.0 | 0.2 | GO:0005664 | origin recognition complex(GO:0000808) nuclear origin of replication recognition complex(GO:0005664) |
| 0.0 | 0.1 | GO:0034457 | Mpp10 complex(GO:0034457) |
| 0.0 | 0.1 | GO:0043198 | dendritic shaft(GO:0043198) |
| 0.0 | 0.1 | GO:0098826 | endoplasmic reticulum tubular network membrane(GO:0098826) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.9 | GO:0030228 | lipoprotein particle receptor activity(GO:0030228) |
| 0.1 | 0.8 | GO:0035804 | structural constituent of egg coat(GO:0035804) |
| 0.1 | 0.4 | GO:0015432 | canalicular bile acid transmembrane transporter activity(GO:0015126) bile acid-exporting ATPase activity(GO:0015432) |
| 0.1 | 0.3 | GO:0004736 | pyruvate carboxylase activity(GO:0004736) |
| 0.0 | 0.3 | GO:0030515 | snoRNA binding(GO:0030515) |
| 0.0 | 0.2 | GO:0008746 | NAD(P)+ transhydrogenase activity(GO:0008746) oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor(GO:0016652) |
| 0.0 | 0.2 | GO:0043139 | 5'-3' DNA helicase activity(GO:0043139) |
| 0.0 | 0.2 | GO:0043495 | protein anchor(GO:0043495) |
| 0.0 | 0.2 | GO:0008327 | methyl-CpG binding(GO:0008327) |
| 0.0 | 0.1 | GO:0016206 | catechol O-methyltransferase activity(GO:0016206) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.4 | PID INTEGRIN2 PATHWAY | Beta2 integrin cell surface interactions |
| 0.0 | 0.1 | PID ARF6 DOWNSTREAM PATHWAY | Arf6 downstream pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.4 | REACTOME COMMON PATHWAY | Genes involved in Common Pathway |
| 0.0 | 0.1 | REACTOME SIGNALING BY NOTCH4 | Genes involved in Signaling by NOTCH4 |