ISMARA results: znf740b

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PRJNA195909:zebrafish embryo and larva development

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Results for znf740b

Z-value: 1.43

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Transcription factors associated with znf740b

Gene Symbol	Gene ID	Gene Info
znf740b NCBI UniProt	ENSDARG00000061174	zinc finger protein 740b

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
znf740b	dr11_v1_chr23_-_36418059_36418059	-0.92	3.9e-04	Click!

Activity profile of znf740b motif

Sorted Z-values of znf740b motif

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Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr11_-_24191928 Show fit	3.79	ENSDART00000136827	sox12 NCBI UniProt Show fit	SRY (sex determining region Y)-box 12
chr14_-_9522364 Show fit	3.71	ENSDART00000054689	atoh8 NCBI UniProt Show fit	atonal bHLH transcription factor 8
chr21_-_26495700 Show fit	3.00	ENSDART00000109379	cd248b NCBI UniProt Show fit	CD248 molecule, endosialin b
chr3_-_61162750 Show fit	2.92	ENSDART00000055064	pvalb8 NCBI UniProt Show fit	parvalbumin 8
chr12_-_16764751 Show fit	2.90	ENSDART00000113862	zgc:174154 NCBI UniProt Show fit	zgc:174154
chr25_+_35502552 Show fit	2.70	ENSDART00000189612 ENSDART00000058443	fibina NCBI UniProt Show fit	fin bud initiation factor a
chr5_-_14326959 Show fit	2.65	ENSDART00000137355	tet3 NCBI UniProt Show fit	tet methylcytosine dioxygenase 3
chr11_-_3334248 Show fit	2.52	ENSDART00000154314 ENSDART00000121861	prph NCBI UniProt Show fit	peripherin
chr12_-_16941319 Show fit	2.50	ENSDART00000109968	zgc:174855 NCBI UniProt Show fit	zgc:174855
chr25_+_1732838 Show fit	2.48	ENSDART00000159555 ENSDART00000168161	FBLN1 NCBI UniProt Show fit	fibulin 1

Showing 1 to 10 of 200 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of znf740b

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
1.2	3.7	GO:2001014	regulation of skeletal muscle cell differentiation(GO:2001014)
0.1	2.7	GO:0099500	synaptic vesicle fusion to presynaptic active zone membrane(GO:0031629) vesicle fusion to plasma membrane(GO:0099500)
0.5	2.6	GO:0032616	interleukin-13 production(GO:0032616) regulation of interleukin-13 production(GO:0032656)
0.0	2.2	GO:0045103	intermediate filament-based process(GO:0045103) intermediate filament cytoskeleton organization(GO:0045104)
0.2	2.1	GO:0032926	negative regulation of activin receptor signaling pathway(GO:0032926)
0.1	2.0	GO:0008345	larval locomotory behavior(GO:0008345) larval behavior(GO:0030537)
0.2	1.9	GO:0072488	ammonium transmembrane transport(GO:0072488)
0.1	1.7	GO:0019471	peptidyl-proline hydroxylation to 4-hydroxy-L-proline(GO:0018401) 4-hydroxyproline metabolic process(GO:0019471)
0.0	1.7	GO:0031101	fin regeneration(GO:0031101)
0.4	1.6	GO:0060437	lung growth(GO:0060437) secretion by lung epithelial cell involved in lung growth(GO:0061033)

Showing 1 to 10 of 85 entries

Gene overrepresentation in cellular component category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	7.5	GO:0031012	extracellular matrix(GO:0031012)
0.0	5.1	GO:0005764	lysosome(GO:0005764)
0.0	4.2	GO:0005882	intermediate filament(GO:0005882)
0.3	3.4	GO:0090533	sodium:potassium-exchanging ATPase complex(GO:0005890) cation-transporting ATPase complex(GO:0090533)
0.0	2.9	GO:0016607	nuclear speck(GO:0016607)
0.0	2.9	GO:0009897	external side of plasma membrane(GO:0009897)
0.1	2.1	GO:0048787	presynaptic active zone membrane(GO:0048787)
0.0	1.8	GO:0016324	apical plasma membrane(GO:0016324)
0.2	1.7	GO:0045095	keratin filament(GO:0045095)
0.0	1.7	GO:0005788	endoplasmic reticulum lumen(GO:0005788)

Showing 1 to 10 of 35 entries

Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	4.0	GO:0001228	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228)
1.0	3.0	GO:1990430	extracellular matrix protein binding(GO:1990430)
0.4	2.6	GO:0070579	methylcytosine dioxygenase activity(GO:0070579)
0.0	2.4	GO:0005201	extracellular matrix structural constituent(GO:0005201)
0.0	2.3	GO:0015293	symporter activity(GO:0015293)
0.1	2.1	GO:0048185	activin binding(GO:0048185)
0.0	2.0	GO:0005484	SNAP receptor activity(GO:0005484)
0.2	1.8	GO:0005021	vascular endothelial growth factor-activated receptor activity(GO:0005021)
0.0	1.8	GO:0017124	SH3 domain binding(GO:0017124)
0.0	1.8	GO:0004197	cysteine-type endopeptidase activity(GO:0004197)

Showing 1 to 10 of 70 entries

Gene overrepresentation in curated gene sets: canonical pathways category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	3.9	NABA ECM GLYCOPROTEINS	Genes encoding structural ECM glycoproteins
0.1	2.4	NABA COLLAGENS	Genes encoding collagen proteins
0.0	1.7	NABA ECM REGULATORS	Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix
0.0	1.2	PID ILK PATHWAY	Integrin-linked kinase signaling
0.0	1.2	PID RAC1 PATHWAY	RAC1 signaling pathway
0.0	1.0	SIG REGULATION OF THE ACTIN CYTOSKELETON BY RHO GTPASES	Genes related to regulation of the actin cytoskeleton
0.1	0.7	PID INTEGRIN5 PATHWAY	Beta5 beta6 beta7 and beta8 integrin cell surface interactions
0.0	0.7	PID ALK1 PATHWAY	ALK1 signaling events
0.1	0.6	PID ALPHA SYNUCLEIN PATHWAY	Alpha-synuclein signaling
0.0	0.6	PID RAS PATHWAY	Regulation of Ras family activation

Showing 1 to 10 of 15 entries

Gene overrepresentation in curated gene sets: REACTOME pathways category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.1	2.4	REACTOME NCAM1 INTERACTIONS	Genes involved in NCAM1 interactions
0.0	1.7	REACTOME NUCLEAR SIGNALING BY ERBB4	Genes involved in Nuclear signaling by ERBB4
0.0	1.6	REACTOME SIGNALING BY ROBO RECEPTOR	Genes involved in Signaling by Robo receptor
0.0	1.5	REACTOME SRP DEPENDENT COTRANSLATIONAL PROTEIN TARGETING TO MEMBRANE	Genes involved in SRP-dependent cotranslational protein targeting to membrane
0.0	1.0	REACTOME AMYLOIDS	Genes involved in Amyloids
0.1	0.8	REACTOME SYNTHESIS OF PE	Genes involved in Synthesis of PE
0.0	0.8	REACTOME CLASS B 2 SECRETIN FAMILY RECEPTORS	Genes involved in Class B/2 (Secretin family receptors)
0.0	0.8	REACTOME RESPIRATORY ELECTRON TRANSPORT ATP SYNTHESIS BY CHEMIOSMOTIC COUPLING AND HEAT PRODUCTION BY UNCOUPLING PROTEINS	Genes involved in Respiratory electron transport, ATP synthesis by chemiosmotic coupling, and heat production by uncoupling proteins.
0.0	0.7	REACTOME INTEGRIN CELL SURFACE INTERACTIONS	Genes involved in Integrin cell surface interactions
0.1	0.5	REACTOME VEGF LIGAND RECEPTOR INTERACTIONS	Genes involved in VEGF ligand-receptor interactions

Showing 1 to 10 of 16 entries

Results for znf740b

Z-value: 1.43

Motif logo

Transcription factors associated with znf740b

Activity-expression correlation:

Activity profile of znf740b motif

Sorted Z-values of znf740b motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of znf740b

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category:

Gene overrepresentation in curated gene sets: canonical pathways category:

Gene overrepresentation in curated gene sets: REACTOME pathways category: