PRJNA195909:zebrafish embryo and larva development

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
vsx2 Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000005574	visual system homeobox 2

Gene	Promoter	Pearson corr. coef.	P-value	Plot
vsx2	dr11_v1_chr17_-_31659670_31659670	-0.11	7.8e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr21_-_13085242 Show fit	0.32	ENSDART00000044504	zgc:109965 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:109965
chr16_+_31804590 Show fit	0.27	ENSDART00000167321	wnt4b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	wingless-type MMTV integration site family, member 4b
chr16_+_46111849 Show fit	0.27	ENSDART00000172232	sv2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	synaptic vesicle glycoprotein 2A
chr21_-_37790727 Show fit	0.26	ENSDART00000162907	gabrb4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	gamma-aminobutyric acid (GABA) A receptor, beta 4
chr23_+_28731379 Show fit	0.22	ENSDART00000047378	cort Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cortistatin
chr21_+_28958471 Show fit	0.21	ENSDART00000144331 ENSDART00000005929	ppp3ca Links NCBI UniProt ZFIN ENSEMBL Google Show fit	protein phosphatase 3, catalytic subunit, alpha isozyme
chr4_+_21129752 Show fit	0.21	ENSDART00000169764	syt1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	synaptotagmin Ia
chr24_-_21923930 Show fit	0.20	ENSDART00000131944	tagln3b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transgelin 3b
chr20_+_35382482 Show fit	0.19	ENSDART00000135284	vsnl1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	visinin-like 1a
chr18_-_1185772 Show fit	0.18	ENSDART00000143245	nptnb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	neuroplastin b
chr17_+_31185276 Show fit	0.18	ENSDART00000062887	disp2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	dispatched homolog 2 (Drosophila)
chr21_+_33172526 Show fit	0.18	ENSDART00000183532	arl3l1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ADP-ribosylation factor-like 3, like 1
chr11_-_3865472 Show fit	0.17	ENSDART00000161426	gata2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	GATA binding protein 2a
chr9_+_11532025 Show fit	0.16	ENSDART00000109037	cdk5r2b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cyclin-dependent kinase 5, regulatory subunit 2b (p39)
chr4_-_17629444 Show fit	0.16	ENSDART00000108814	nrip2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	nuclear receptor interacting protein 2
chr21_+_6751405 Show fit	0.16	ENSDART00000037265 ENSDART00000146371	olfm1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	olfactomedin 1b
chr1_-_19402802 Show fit	0.15	ENSDART00000135552	rbm47 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	RNA binding motif protein 47
chr21_+_6751760 Show fit	0.15	ENSDART00000135914	olfm1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	olfactomedin 1b
chr21_+_25231160 Show fit	0.14	ENSDART00000063089 ENSDART00000139127	gng8 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	guanine nucleotide binding protein (G protein), gamma 8
chr5_-_16996482 Show fit	0.14	ENSDART00000144501	galnt9 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	polypeptide N-acetylgalactosaminyltransferase 9
chr3_-_46817499 Show fit	0.13	ENSDART00000013717	elavl3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ELAV like neuron-specific RNA binding protein 3
chr14_+_25817628 Show fit	0.13	ENSDART00000047680	glra1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	glycine receptor, alpha 1
chr21_-_27185915 Show fit	0.13	ENSDART00000135052	slc8a4a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	solute carrier family 8 (sodium/calcium exchanger), member 4a
chr9_-_5263947 Show fit	0.12	ENSDART00000088342	cytip Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cytohesin 1 interacting protein
chr12_-_35095414 Show fit	0.12	ENSDART00000153229	si:dkey-21e13.3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-21e13.3
chr15_-_22074315 Show fit	0.12	ENSDART00000149830	drd2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	dopamine receptor D2a
chr11_-_42554290 Show fit	0.12	ENSDART00000130573	atp6ap1la Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ATPase H+ transporting accessory protein 1 like a
chr2_-_35566938 Show fit	0.11	ENSDART00000029006 ENSDART00000077178 ENSDART00000125298	tnn Links NCBI UniProt ZFIN ENSEMBL Google Show fit	tenascin N
chr22_-_20011476 Show fit	0.11	ENSDART00000093312 ENSDART00000093310	celf5a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cugbp, Elav-like family member 5a
chr23_+_28582865 Show fit	0.11	ENSDART00000020296	l1cama Links NCBI UniProt ZFIN ENSEMBL Google Show fit	L1 cell adhesion molecule, paralog a
chr8_+_18588551 Show fit	0.10	ENSDART00000177476 ENSDART00000063539	prrg1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	proline rich Gla (G-carboxyglutamic acid) 1
chr11_+_38280454 Show fit	0.10	ENSDART00000171496	CDK18 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-166c18.1
chr20_-_9436521 Show fit	0.10	ENSDART00000133000	zgc:101840 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:101840
chr19_+_22062202 Show fit	0.09	ENSDART00000100181	sall3b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	spalt-like transcription factor 3b
chr8_-_15129573 Show fit	0.09	ENSDART00000142358	bcar3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	BCAR3, NSP family adaptor protein
chr13_-_42560662 Show fit	0.09	ENSDART00000124898	CR792417.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr24_-_23320223 Show fit	0.09	ENSDART00000135846	zfhx4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zinc finger homeobox 4
chr25_-_16057539 Show fit	0.09	ENSDART00000090388	cyb5r2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cytochrome b5 reductase 2
chr5_-_64831207 Show fit	0.09	ENSDART00000144816	lix1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	limb and CNS expressed 1
chr18_+_28106139 Show fit	0.09	ENSDART00000089615	kiaa1549lb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	KIAA1549-like b
chr4_-_20292821 Show fit	0.08	ENSDART00000136069 ENSDART00000192504	cacna2d4a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	calcium channel, voltage-dependent, alpha 2/delta subunit 4a
chr13_-_44630111 Show fit	0.08	ENSDART00000110092	mdga1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	MAM domain containing glycosylphosphatidylinositol anchor 1
chr15_-_16098531 Show fit	0.08	ENSDART00000080377	aldoca Links NCBI UniProt ZFIN ENSEMBL Google Show fit	aldolase C, fructose-bisphosphate, a
chr18_-_2433011 Show fit	0.08	ENSDART00000181922 ENSDART00000193276	CR769778.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr24_+_35881124 Show fit	0.07	ENSDART00000143015	klhl14 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	kelch-like family member 14
chr20_-_46362606 Show fit	0.07	ENSDART00000153087	bmf2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	BCL2 modifying factor 2
chr23_-_19230627 Show fit	0.07	ENSDART00000007122	guca1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	guanylate cyclase activator 1B
chr11_-_37425407 Show fit	0.06	ENSDART00000160911	erc2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ELKS/RAB6-interacting/CAST family member 2
chr4_+_3980247 Show fit	0.06	ENSDART00000049194	gpr37b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	G protein-coupled receptor 37b
chr21_+_32820175 Show fit	0.06	ENSDART00000076903	adra2db Links NCBI UniProt ZFIN ENSEMBL Google Show fit	adrenergic, alpha-2D-, receptor b
chr9_+_50001746 Show fit	0.06	ENSDART00000058892	slc38a11 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	solute carrier family 38, member 11
chr22_-_13350240 Show fit	0.06	ENSDART00000154095 ENSDART00000155118	si:ch211-227m13.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-227m13.1
chr24_-_6078222 Show fit	0.06	ENSDART00000146830	apbb1ip Links NCBI UniProt ZFIN ENSEMBL Google Show fit	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein
chr5_-_48268049 Show fit	0.05	ENSDART00000187454	mef2cb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	myocyte enhancer factor 2cb
chr3_-_43356082 Show fit	0.05	ENSDART00000171213	uncx Links NCBI UniProt ZFIN ENSEMBL Google Show fit	UNC homeobox
chr20_+_37294112 Show fit	0.05	ENSDART00000076293 ENSDART00000140450	cx23 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	connexin 23
chr13_+_19322686 Show fit	0.05	ENSDART00000058036	emx2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	empty spiracles homeobox 2
chr14_+_40874608 Show fit	0.05	ENSDART00000168448	si:ch211-106m9.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-106m9.1
chr3_-_46811611 Show fit	0.04	ENSDART00000134092	elavl3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ELAV like neuron-specific RNA binding protein 3
chr18_+_14529005 Show fit	0.04	ENSDART00000186379	kcng4a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	potassium voltage-gated channel, subfamily G, member 4a
chr17_+_3379673 Show fit	0.04	ENSDART00000176354	sntg2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	syntrophin, gamma 2
chr23_+_23658474 Show fit	0.04	ENSDART00000162838	agrn Links NCBI UniProt ZFIN ENSEMBL Google Show fit	agrin
chr23_-_24483311 Show fit	0.04	ENSDART00000185793 ENSDART00000109248	spen Links NCBI UniProt ZFIN ENSEMBL Google Show fit	spen family transcriptional repressor
chr11_+_18873113 Show fit	0.04	ENSDART00000103969 ENSDART00000103968	magi1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	membrane associated guanylate kinase, WW and PDZ domain containing 1b
chr8_+_20776654 Show fit	0.03	ENSDART00000135850	nfic Links NCBI UniProt ZFIN ENSEMBL Google Show fit	nuclear factor I/C
chr11_+_18873619 Show fit	0.03	ENSDART00000176141	magi1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	membrane associated guanylate kinase, WW and PDZ domain containing 1b
chr12_+_20352400 Show fit	0.03	ENSDART00000066383	hbae5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	hemoglobin, alpha embryonic 5
chr5_-_28109416 Show fit	0.03	ENSDART00000042002	si:ch211-48m9.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-48m9.1
chr23_-_24195519 Show fit	0.03	ENSDART00000112370 ENSDART00000180377	ano11 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	anoctamin 11
chr3_+_17537352 Show fit	0.02	ENSDART00000104549	hcrt Links NCBI UniProt ZFIN ENSEMBL Google Show fit	hypocretin (orexin) neuropeptide precursor
chr23_-_24195723 Show fit	0.02	ENSDART00000145489	ano11 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	anoctamin 11
chr7_-_4315859 Show fit	0.02	ENSDART00000172762	si:ch211-63p21.8 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-63p21.8
chr18_-_24989580 Show fit	0.02	ENSDART00000163449	chd2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	chromodomain helicase DNA binding protein 2
chr15_+_5360407 Show fit	0.02	ENSDART00000110420	or112-1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	odorant receptor, family A, subfamily 112, member 1
chr12_-_19862912 Show fit	0.02	ENSDART00000145788	shisa9a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	shisa family member 9a
chr24_-_35282568 Show fit	0.01	ENSDART00000167406 ENSDART00000088609	sntg1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	syntrophin, gamma 1
chr5_+_5398966 Show fit	0.01	ENSDART00000139553	mapkap1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	mitogen-activated protein kinase associated protein 1
chr1_-_17715493 Show fit	0.00	ENSDART00000133027	si:dkey-256e7.8 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-256e7.8
chr15_-_9272328 Show fit	0.00	ENSDART00000172114	calm2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	calmodulin 2a (phosphorylase kinase, delta)
chr10_+_42423318 Show fit	0.00	ENSDART00000134282	npy8ar Links NCBI UniProt ZFIN ENSEMBL Google Show fit	neuropeptide Y receptor Y8a
chr13_+_35637048 Show fit	0.00	ENSDART00000085037	thbs2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	thrombospondin 2a
chr1_+_55755304 Show fit	0.00	ENSDART00000144983	tecrb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	trans-2,3-enoyl-CoA reductase b

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.2	GO:1902895	pri-miRNA transcription from RNA polymerase II promoter(GO:0061614) regulation of pri-miRNA transcription from RNA polymerase II promoter(GO:1902893) positive regulation of pri-miRNA transcription from RNA polymerase II promoter(GO:1902895)
0.0	0.1	GO:0071361	cellular response to ethanol(GO:0071361)
0.0	0.2	GO:0016554	cytidine to uridine editing(GO:0016554)
0.0	0.2	GO:0033173	calcineurin-NFAT signaling cascade(GO:0033173)
0.0	0.0	GO:1902571	regulation of serine-type peptidase activity(GO:1902571)
0.0	0.1	GO:0071881	adenylate cyclase-inhibiting adrenergic receptor signaling pathway(GO:0071881)
0.0	0.1	GO:0042044	fluid transport(GO:0042044)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.2	GO:0042584	chromaffin granule membrane(GO:0042584)
0.0	0.2	GO:0005955	calcineurin complex(GO:0005955)
0.0	0.2	GO:0016533	cyclin-dependent protein kinase 5 holoenzyme complex(GO:0016533)
0.0	0.1	GO:0033181	plasma membrane proton-transporting V-type ATPase complex(GO:0033181)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.2	GO:0004723	calcium-dependent protein serine/threonine phosphatase activity(GO:0004723) calmodulin-dependent protein phosphatase activity(GO:0033192)
0.0	0.1	GO:0008046	axon guidance receptor activity(GO:0008046)
0.0	0.1	GO:0016934	extracellular-glycine-gated ion channel activity(GO:0016933) extracellular-glycine-gated chloride channel activity(GO:0016934)
0.0	0.1	GO:0004128	cytochrome-b5 reductase activity, acting on NAD(P)H(GO:0004128)
0.0	0.2	GO:0061575	cyclin-dependent protein serine/threonine kinase activator activity(GO:0061575)
0.0	0.1	GO:0004938	alpha2-adrenergic receptor activity(GO:0004938)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.2	PID IL12 STAT4 PATHWAY	IL12 signaling mediated by STAT4

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.2	REACTOME DARPP 32 EVENTS	Genes involved in DARPP-32 events