Project
PRJNA195909:zebrafish embryo and larva development
Navigation
Downloads
Results for tgif1
Z-value: 3.11
Motif logo
Transcription factors associated with tgif1
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| tgif1 | dr11_v1_chr24_-_9291857_9291857 | -0.95 | 8.9e-05 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr15_-_4415917 Show fit | 1.95 |
ENSDART00000062874
|
ATPase Na+/K+ transporting subunit beta 3b |
|
| chr9_-_22272181 Show fit | 1.86 |
ENSDART00000113174
|
crystallin, gamma M2d7 |
|
| chr5_+_26686639 Show fit | 1.80 |
ENSDART00000079064
|
transport and golgi organization 2 homolog (Drosophila) |
|
| chr3_+_16722014 Show fit | 1.74 |
ENSDART00000008711
|
glycogen synthase 1 (muscle) |
|
| chr25_+_19238175 Show fit | 1.70 |
ENSDART00000110730
ENSDART00000193619 ENSDART00000154420 |
diphosphoinositol pentakisphosphate kinase 1b |
|
| chr9_-_22232902 Show fit | 1.55 |
ENSDART00000101845
|
crystallin, gamma M2d5 |
|
| chr13_-_23756700 Show fit | 1.55 |
ENSDART00000057612
|
regulator of G protein signaling 17 |
|
| chr23_+_19558574 Show fit | 1.50 |
ENSDART00000137811
|
ATPase H+ transporting accessory protein 1 like b |
|
| chr2_-_42558549 Show fit | 1.46 |
ENSDART00000025997
|
disco-interacting protein 2 homolog Cb |
|
| chr19_+_33850705 Show fit | 1.45 |
ENSDART00000160356
|
peroxisomal biogenesis factor 1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of tgif1
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 13.0 | GO:0002088 | lens development in camera-type eye(GO:0002088) |
| 0.0 | 4.6 | GO:0006470 | protein dephosphorylation(GO:0006470) |
| 0.0 | 3.0 | GO:0018105 | peptidyl-serine phosphorylation(GO:0018105) |
| 0.0 | 2.9 | GO:0006073 | glycogen metabolic process(GO:0005977) cellular glucan metabolic process(GO:0006073) glucan metabolic process(GO:0044042) |
| 0.1 | 2.8 | GO:0032958 | inositol phosphate biosynthetic process(GO:0032958) |
| 0.0 | 2.7 | GO:0007030 | Golgi organization(GO:0007030) |
| 0.2 | 2.6 | GO:0031468 | nuclear envelope reassembly(GO:0031468) |
| 0.1 | 2.6 | GO:0030050 | vesicle transport along actin filament(GO:0030050) actin filament-based transport(GO:0099515) |
| 0.1 | 2.5 | GO:0032011 | ARF protein signal transduction(GO:0032011) regulation of ARF protein signal transduction(GO:0032012) |
| 0.2 | 2.4 | GO:0035493 | SNARE complex assembly(GO:0035493) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 6.1 | GO:0005769 | early endosome(GO:0005769) |
| 0.0 | 4.6 | GO:0098794 | postsynapse(GO:0098794) |
| 0.0 | 3.5 | GO:0099572 | postsynaptic specialization(GO:0099572) |
| 0.0 | 3.5 | GO:0070382 | exocytic vesicle(GO:0070382) |
| 0.0 | 2.9 | GO:0016459 | myosin complex(GO:0016459) |
| 0.0 | 2.8 | GO:0005776 | autophagosome(GO:0005776) |
| 0.1 | 2.2 | GO:0035869 | ciliary transition zone(GO:0035869) |
| 0.0 | 2.1 | GO:0042734 | presynaptic membrane(GO:0042734) |
| 0.0 | 2.1 | GO:0005871 | kinesin complex(GO:0005871) |
| 0.1 | 2.0 | GO:0080008 | Cul4-RING E3 ubiquitin ligase complex(GO:0080008) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 13.3 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
| 0.0 | 6.5 | GO:0005085 | guanyl-nucleotide exchange factor activity(GO:0005085) |
| 0.0 | 4.8 | GO:0000149 | SNARE binding(GO:0000149) |
| 0.0 | 4.1 | GO:0005096 | GTPase activator activity(GO:0005096) |
| 0.0 | 3.5 | GO:0035091 | phosphatidylinositol binding(GO:0035091) |
| 0.1 | 3.3 | GO:0042043 | neurexin family protein binding(GO:0042043) |
| 0.0 | 2.6 | GO:0030898 | actin-dependent ATPase activity(GO:0030898) |
| 0.6 | 2.5 | GO:0000829 | inositol heptakisphosphate kinase activity(GO:0000829) diphosphoinositol-pentakisphosphate kinase activity(GO:0033857) |
| 0.3 | 2.5 | GO:0019871 | sodium channel inhibitor activity(GO:0019871) |
| 0.1 | 2.4 | GO:0015269 | calcium-activated potassium channel activity(GO:0015269) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 3.5 | PID INSULIN GLUCOSE PATHWAY | Insulin-mediated glucose transport |
| 0.1 | 3.2 | PID TGFBR PATHWAY | TGF-beta receptor signaling |
| 0.1 | 2.4 | PID ARF 3PATHWAY | Arf1 pathway |
| 0.0 | 1.8 | PID AR TF PATHWAY | Regulation of Androgen receptor activity |
| 0.1 | 1.7 | PID LPA4 PATHWAY | LPA4-mediated signaling events |
| 0.1 | 1.5 | PID IL8 CXCR1 PATHWAY | IL8- and CXCR1-mediated signaling events |
| 0.1 | 1.5 | PID MAPK TRK PATHWAY | Trk receptor signaling mediated by the MAPK pathway |
| 0.1 | 1.3 | PID IL2 1PATHWAY | IL2-mediated signaling events |
| 0.0 | 1.3 | PID INSULIN PATHWAY | Insulin Pathway |
| 0.1 | 1.1 | PID EPHA2 FWD PATHWAY | EPHA2 forward signaling |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 4.1 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
| 0.1 | 3.0 | REACTOME GLUCOSE METABOLISM | Genes involved in Glucose metabolism |
| 0.1 | 2.0 | REACTOME SIGNALING BY HIPPO | Genes involved in Signaling by Hippo |
| 0.1 | 1.9 | REACTOME GLYCOGEN BREAKDOWN GLYCOGENOLYSIS | Genes involved in Glycogen breakdown (glycogenolysis) |
| 0.1 | 1.8 | REACTOME G ALPHA Z SIGNALLING EVENTS | Genes involved in G alpha (z) signalling events |
| 0.0 | 1.8 | REACTOME CELL DEATH SIGNALLING VIA NRAGE NRIF AND NADE | Genes involved in Cell death signalling via NRAGE, NRIF and NADE |
| 0.2 | 1.7 | REACTOME ADENYLATE CYCLASE ACTIVATING PATHWAY | Genes involved in Adenylate cyclase activating pathway |
| 0.1 | 1.7 | REACTOME INSULIN SYNTHESIS AND PROCESSING | Genes involved in Insulin Synthesis and Processing |
| 0.2 | 1.4 | REACTOME REGULATION OF INSULIN SECRETION BY ACETYLCHOLINE | Genes involved in Regulation of Insulin Secretion by Acetylcholine |
| 0.1 | 1.4 | REACTOME COPI MEDIATED TRANSPORT | Genes involved in COPI Mediated Transport |