PRJNA195909:zebrafish embryo and larva development

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
tbx20 Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000005150	T-box transcription factor 20

Gene	Promoter	Pearson corr. coef.	P-value	Plot
tbx20	dr11_v1_chr16_-_42523744_42523744	0.29	4.6e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr5_+_32228538 Show fit	0.51	ENSDART00000077471	myhc4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	myosin heavy chain 4
chr1_-_59360114 Show fit	0.50	ENSDART00000160445	CABZ01052573.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr21_+_30351256 Show fit	0.49	ENSDART00000078341	foxi3a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	forkhead box I3a
chr3_-_5964557 Show fit	0.42	ENSDART00000184738	BX284638.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr25_+_36152215 Show fit	0.35	ENSDART00000036147	irx5b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	iroquois homeobox 5b
chr21_-_2273244 Show fit	0.35	ENSDART00000171417	si:ch73-299h12.3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch73-299h12.3
chr9_+_23900703 Show fit	0.32	ENSDART00000127859	trim63b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	tripartite motif containing 63b
chr4_+_47257854 Show fit	0.32	ENSDART00000173868	crestin Links NCBI UniProt ZFIN ENSEMBL Google Show fit	crestin
chr12_-_43664682 Show fit	0.31	ENSDART00000159423	foxi1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	forkhead box i1
chr2_+_43469241 Show fit	0.30	ENSDART00000142078 ENSDART00000098265	nrp1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	neuropilin 1b
chr6_+_9130989 Show fit	0.29	ENSDART00000162588	rgn Links NCBI UniProt ZFIN ENSEMBL Google Show fit	regucalcin
chr5_+_12515402 Show fit	0.29	ENSDART00000103278	zgc:171242 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:171242
chr15_-_31516558 Show fit	0.29	ENSDART00000156427 ENSDART00000156072 ENSDART00000156047	hmgb1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	high mobility group box 1b
chr13_-_31812394 Show fit	0.28	ENSDART00000124445	sertad4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	SERTA domain containing 4
chr11_+_24729346 Show fit	0.28	ENSDART00000087740	zgc:153953 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:153953
chr1_-_26027327 Show fit	0.26	ENSDART00000171292 ENSDART00000170878	si:ch211-145b13.6 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-145b13.6
chr3_-_33417826 Show fit	0.25	ENSDART00000084284	abi3a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ABI family, member 3a
chr19_+_26718074 Show fit	0.24	ENSDART00000134455	zgc:100906 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:100906
chr7_-_69853453 Show fit	0.22	ENSDART00000049928	myoz2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	myozenin 2a
chr7_+_39389273 Show fit	0.21	ENSDART00000191298	tnni2b.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	troponin I type 2b (skeletal, fast), tandem duplicate 2
chr24_+_13869092 Show fit	0.21	ENSDART00000176492	eya1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	EYA transcriptional coactivator and phosphatase 1
chr8_-_52859301 Show fit	0.20	ENSDART00000162004	nr5a1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	nuclear receptor subfamily 5, group A, member 1a
chr5_-_44843738 Show fit	0.19	ENSDART00000003926	fbp1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	fructose-1,6-bisphosphatase 1a
chr22_-_34872533 Show fit	0.18	ENSDART00000167176	slit1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	slit homolog 1b (Drosophila)
chr12_+_15290800 Show fit	0.18	ENSDART00000145656	med1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	mediator complex subunit 1
chr1_-_462165 Show fit	0.18	ENSDART00000152799	si:ch73-244f7.3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch73-244f7.3
chr25_+_37130450 Show fit	0.17	ENSDART00000183358	si:ch1073-174d20.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch1073-174d20.1
chr17_+_26965351 Show fit	0.17	ENSDART00000114215 ENSDART00000147192	grhl3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	grainyhead-like transcription factor 3
chr20_+_826459 Show fit	0.16	ENSDART00000104740	nt5e Links NCBI UniProt ZFIN ENSEMBL Google Show fit	5'-nucleotidase, ecto (CD73)
chr2_-_31301929 Show fit	0.16	ENSDART00000191992 ENSDART00000190723	adcyap1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	adenylate cyclase activating polypeptide 1b
chr14_+_20911310 Show fit	0.15	ENSDART00000160318	lygl2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	lysozyme g-like 2
chr7_+_38249858 Show fit	0.15	ENSDART00000150158	si:dkey-78a14.4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-78a14.4
chr8_+_68864 Show fit	0.14	ENSDART00000164574	prr16 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	proline rich 16
chr12_+_763051 Show fit	0.14	ENSDART00000152579	abcc3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ATP-binding cassette, sub-family C (CFTR/MRP), member 3
chr7_+_756942 Show fit	0.12	ENSDART00000152224	zgc:63470 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:63470
chr3_-_8285123 Show fit	0.11	ENSDART00000158699 ENSDART00000138588	trim35-9 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	tripartite motif containing 35-9
chr11_+_44622472 Show fit	0.11	ENSDART00000159068 ENSDART00000166323 ENSDART00000187753	rbm34 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	RNA binding motif protein 34
chr25_-_7686201 Show fit	0.10	ENSDART00000157267 ENSDART00000155094	si:ch211-286c4.6 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-286c4.6
chr13_+_18276187 Show fit	0.10	ENSDART00000141009	tet1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	tet methylcytosine dioxygenase 1
chr4_+_32156734 Show fit	0.10	ENSDART00000163904	CR450785.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr24_+_41940299 Show fit	0.09	ENSDART00000022349	epb41l3a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	erythrocyte membrane protein band 4.1-like 3a
chr3_+_25857008 Show fit	0.09	ENSDART00000154899 ENSDART00000193762	zgc:171844 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:171844
chr24_+_42948 Show fit	0.09	ENSDART00000122785	tmx3b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	thioredoxin related transmembrane protein 3b
chr21_+_40232910 Show fit	0.09	ENSDART00000075915	or115-11 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	odorant receptor, family F, subfamily 115, member 11
chr23_+_21380079 Show fit	0.09	ENSDART00000089379	iffo2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	intermediate filament family orphan 2a
chr11_-_44622478 Show fit	0.07	ENSDART00000171837	tbce Links NCBI UniProt ZFIN ENSEMBL Google Show fit	tubulin folding cofactor E
chr3_+_52475058 Show fit	0.07	ENSDART00000035867	si:ch211-241f5.3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-241f5.3
chr23_-_45049044 Show fit	0.07	ENSDART00000067630	SH3GL2 (1 of many) Links NCBI UniProt ZFIN ENSEMBL Google Show fit	SH3 domain containing GRB2 like 2, endophilin A1
chr2_+_15776156 Show fit	0.07	ENSDART00000190795	vav3b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	vav 3 guanine nucleotide exchange factor b
chr11_-_12104917 Show fit	0.06	ENSDART00000136108	mrpl45 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	mitochondrial ribosomal protein L45
chr5_+_9382301 Show fit	0.06	ENSDART00000124017	ugt2a7 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	UDP glucuronosyltransferase 2 family, polypeptide A7
chr10_+_11355841 Show fit	0.05	ENSDART00000193067 ENSDART00000064215	cops4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis)
chr16_-_563732 Show fit	0.05	ENSDART00000183394	irx2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	iroquois homeobox 2a
chr11_-_44622240 Show fit	0.05	ENSDART00000172258 ENSDART00000173340	tbce Links NCBI UniProt ZFIN ENSEMBL Google Show fit	tubulin folding cofactor E
chr8_-_11112058 Show fit	0.05	ENSDART00000042755	ampd1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	adenosine monophosphate deaminase 1 (isoform M)
chr5_-_49012569 Show fit	0.05	ENSDART00000184690	si:dkey-172m14.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-172m14.2
chr4_+_35138928 Show fit	0.05	ENSDART00000167934 ENSDART00000192116 ENSDART00000183689	si:dkey-279j5.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-279j5.1
chr1_-_46326156 Show fit	0.05	ENSDART00000040284	atp11a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ATPase phospholipid transporting 11A
chr3_-_5555500 Show fit	0.05	ENSDART00000176133 ENSDART00000057464	trim35-31 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	tripartite motif containing 35-31
chr3_+_17314997 Show fit	0.05	ENSDART00000139763	stat5a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	signal transducer and activator of transcription 5a
chr17_-_15600455 Show fit	0.05	ENSDART00000110272 ENSDART00000156911	si:ch211-266g18.9 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-266g18.9
chr12_+_3848109 Show fit	0.04	ENSDART00000144067 ENSDART00000192042	cabp5a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	calcium binding protein 5a
chr8_+_36416285 Show fit	0.04	ENSDART00000158400	si:busm1-194e12.8 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:busm1-194e12.8
chr15_+_43799258 Show fit	0.04	ENSDART00000122238	tyr Links NCBI UniProt ZFIN ENSEMBL Google Show fit	tyrosinase
chr4_+_59320243 Show fit	0.04	ENSDART00000150611	znf1084 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zinc finger protein 1084
chr4_+_38103421 Show fit	0.04	ENSDART00000164164	znf1016 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zinc finger protein 1016
chr20_-_31808779 Show fit	0.04	ENSDART00000133788	stxbp5a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	syntaxin binding protein 5a (tomosyn)
chr21_+_5494561 Show fit	0.03	ENSDART00000169728	ly6m3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	lymphocyte antigen 6 family member M3
chr24_+_26742226 Show fit	0.03	ENSDART00000079721	ghsrb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	growth hormone secretagogue receptor b
chr16_-_7379328 Show fit	0.03	ENSDART00000060447	med18 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	mediator of RNA polymerase II transcription, subunit 18 homolog (yeast)
chr20_-_116999 Show fit	0.03	ENSDART00000149581	ypel5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	yippee-like 5
chr4_-_75812937 Show fit	0.03	ENSDART00000125096	si:ch211-203c5.3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-203c5.3
chr12_+_49100365 Show fit	0.03	ENSDART00000171905	CABZ01075125.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr25_-_35107791 Show fit	0.02	ENSDART00000192819	zgc:165555 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:165555
chr4_+_59234719 Show fit	0.02	ENSDART00000170724 ENSDART00000192143 ENSDART00000109914	znf1086 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zinc finger protein 1086
chr18_-_51015718 Show fit	0.02	ENSDART00000190698	LO018598.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr25_+_37285737 Show fit	0.02	ENSDART00000126879	tmed6 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transmembrane p24 trafficking protein 6
chr5_-_36549024 Show fit	0.02	ENSDART00000097671	zgc:158432 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:158432
chr17_+_33375469 Show fit	0.02	ENSDART00000032827	zgc:162964 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:162964
chr19_+_177455 Show fit	0.01	ENSDART00000111580	tmem65 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transmembrane protein 65
chr25_+_19170500 Show fit	0.01	ENSDART00000182572	BX294110.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr12_+_19362547 Show fit	0.01	ENSDART00000180148	gspt1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	G1 to S phase transition 1
chr12_-_48127985 Show fit	0.01	ENSDART00000193805	npffr1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	neuropeptide FF receptor 1
chr7_+_6879534 Show fit	0.01	ENSDART00000157731	zgc:175248 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:175248
chr16_+_12660477 Show fit	0.01	ENSDART00000016834	aicda Links NCBI UniProt ZFIN ENSEMBL Google Show fit	activation-induced cytidine deaminase
chr8_+_30747940 Show fit	0.00	ENSDART00000098975	p2rx4b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	purinergic receptor P2X, ligand-gated ion channel, 4b
chr17_+_33496067 Show fit	0.00	ENSDART00000184724	pth2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	parathyroid hormone 2
chr2_+_15776408 Show fit	0.00	ENSDART00000176628	vav3b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	vav 3 guanine nucleotide exchange factor b

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.2	0.8	GO:0009957	epidermal cell fate specification(GO:0009957)
0.1	0.3	GO:0042364	L-ascorbic acid metabolic process(GO:0019852) water-soluble vitamin biosynthetic process(GO:0042364)
0.1	0.2	GO:0005985	sucrose metabolic process(GO:0005985) sucrose biosynthetic process(GO:0005986) disaccharide biosynthetic process(GO:0046351)
0.1	0.2	GO:0097067	cellular response to thyroid hormone stimulus(GO:0097067)
0.0	0.1	GO:0016998	cell wall macromolecule catabolic process(GO:0016998)
0.0	0.3	GO:0035767	endothelial cell chemotaxis(GO:0035767)
0.0	0.2	GO:0009169	purine nucleoside monophosphate catabolic process(GO:0009128) ribonucleoside monophosphate catabolic process(GO:0009158) purine ribonucleoside monophosphate catabolic process(GO:0009169)
0.0	0.3	GO:0018120	peptidyl-arginine ADP-ribosylation(GO:0018120)
0.0	0.2	GO:2001239	histone dephosphorylation(GO:0016576) negative regulation of signal transduction in absence of ligand(GO:1901099) regulation of extrinsic apoptotic signaling pathway in absence of ligand(GO:2001239) negative regulation of extrinsic apoptotic signaling pathway in absence of ligand(GO:2001240)
0.0	0.1	GO:0018171	peptidyl-cysteine oxidation(GO:0018171)
0.0	0.1	GO:0032616	interleukin-13 production(GO:0032616) regulation of interleukin-13 production(GO:0032656)
0.0	0.2	GO:0030325	adrenal gland development(GO:0030325)
0.0	0.0	GO:0042416	dopamine biosynthetic process from tyrosine(GO:0006585) dopamine biosynthetic process(GO:0042416)
0.0	0.1	GO:0007023	post-chaperonin tubulin folding pathway(GO:0007023)
0.0	0.2	GO:0060325	face morphogenesis(GO:0060325)
0.0	0.1	GO:1904861	excitatory synapse assembly(GO:1904861)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.2	GO:0042132	fructose 1,6-bisphosphate 1-phosphatase activity(GO:0042132)
0.0	0.2	GO:0016521	pituitary adenylate cyclase activating polypeptide activity(GO:0016521)
0.0	0.1	GO:0003796	lysozyme activity(GO:0003796)
0.0	0.2	GO:0042809	vitamin D receptor binding(GO:0042809)
0.0	0.3	GO:0003956	NAD(P)+-protein-arginine ADP-ribosyltransferase activity(GO:0003956)
0.0	0.3	GO:0005021	vascular endothelial growth factor-activated receptor activity(GO:0005021)
0.0	0.1	GO:0004060	arylamine N-acetyltransferase activity(GO:0004060)
0.0	0.2	GO:0031433	telethonin binding(GO:0031433) FATZ binding(GO:0051373)
0.0	0.3	GO:0008301	DNA binding, bending(GO:0008301)
0.0	0.1	GO:0070579	methylcytosine dioxygenase activity(GO:0070579)
0.0	0.0	GO:0016716	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, another compound as one donor, and incorporation of one atom of oxygen(GO:0016716)
0.0	0.1	GO:0016972	thiol oxidase activity(GO:0016972)
0.0	0.1	GO:0043014	alpha-tubulin binding(GO:0043014)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.2	REACTOME PURINE CATABOLISM	Genes involved in Purine catabolism
0.0	0.1	REACTOME RECYCLING OF BILE ACIDS AND SALTS	Genes involved in Recycling of bile acids and salts