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PRJNA195909:zebrafish embryo and larva development

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Results for sox7

Z-value: 0.37

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Transcription factors associated with sox7

Gene Symbol Gene ID Gene Info
sox7
ENSDARG00000030125 SRY-box transcription factor 7

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
sox7dr11_v1_chr20_+_19066596_19066596-0.196.2e-01Click!

Activity profile of sox7 motif

Sorted Z-values of sox7 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr5_-_37103487 0.52 ENSDART00000149211
il13ra2
interleukin 13 receptor, alpha 2
chr3_-_6709938 0.47 ENSDART00000172196
atg4db
autophagy related 4D, cysteine peptidase b
chr17_-_26537928 0.46 ENSDART00000155692
ENSDART00000122366
ccser2a
coiled-coil serine-rich protein 2a
chr5_-_3960161 0.44 ENSDART00000111453
myo19
myosin XIX
chr16_-_42306597 0.39 ENSDART00000158046
ppox
protoporphyrinogen oxidase
chr8_+_2787042 0.37 ENSDART00000155275
sh3glb2a
SH3-domain GRB2-like endophilin B2a
chr25_+_28253844 0.35 ENSDART00000151891
cadps2
Ca++-dependent secretion activator 2
chr8_-_22514918 0.30 ENSDART00000021514
ENSDART00000189272
apex2
APEX nuclease (apurinic/apyrimidinic endonuclease) 2
chr18_+_15876385 0.29 ENSDART00000142527
eea1
early endosome antigen 1
chr7_-_4107423 0.29 ENSDART00000172971
zgc:55733
zgc:55733
chr11_+_6010177 0.27 ENSDART00000170047
ENSDART00000022526
ENSDART00000161001
ENSDART00000188999
gtpbp3
GTP binding protein 3, mitochondrial
chr11_-_35970966 0.26 ENSDART00000188805
itpr1b
inositol 1,4,5-trisphosphate receptor, type 1b
chr7_+_18176162 0.26 ENSDART00000109171
rce1a
Ras converting CAAX endopeptidase 1a
chr22_+_6740039 0.25 ENSDART00000144122
CT583625.2

chr8_+_23174137 0.23 ENSDART00000189470
dnajc5aa
DnaJ (Hsp40) homolog, subfamily C, member 5aa
chr5_+_13891202 0.23 ENSDART00000193992
hk2
hexokinase 2
chr18_+_14684115 0.19 ENSDART00000108469
spata2l
spermatogenesis associated 2-like
chr15_-_21692630 0.19 ENSDART00000039865
sdhdb
succinate dehydrogenase complex, subunit D, integral membrane protein b
chr11_-_34577034 0.19 ENSDART00000133302
ENSDART00000184367
pfkfb4a
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4a
chr14_-_6365223 0.19 ENSDART00000167446
slc44a1b
solute carrier family 44 (choline transporter), member 1b
chr18_-_12654011 0.19 ENSDART00000062343
hipk2
homeodomain interacting protein kinase 2
chr12_-_33558879 0.18 ENSDART00000161167
mbtd1
mbt domain containing 1
chr8_-_21058354 0.17 ENSDART00000130481
ENSDART00000113749
zgc:112962
zgc:112962
chr22_-_26558166 0.16 ENSDART00000111125
glis2a
GLIS family zinc finger 2a
chr2_+_27386617 0.16 ENSDART00000134976
si:ch73-382f3.1
si:ch73-382f3.1
chr21_+_20903244 0.16 ENSDART00000186193
c7b
complement component 7b
chr20_+_37294112 0.15 ENSDART00000076293
ENSDART00000140450
cx23
connexin 23
chr14_+_1124409 0.15 ENSDART00000190043
ENSDART00000106708
ENSDART00000160246
sec24b
SEC24 homolog B, COPII coat complex component
chr21_+_19330774 0.15 ENSDART00000109412
helq
helicase, POLQ like
chr22_-_12862415 0.15 ENSDART00000145156
ENSDART00000137280
glsa
glutaminase a
chr11_+_14104417 0.14 ENSDART00000059752
ENSDART00000186575
med16
mediator complex subunit 16
chr18_-_18524624 0.14 ENSDART00000157834
lonp2
lon peptidase 2, peroxisomal
chr8_-_40205712 0.14 ENSDART00000158927
anapc5
anaphase promoting complex subunit 5
chr1_+_6206950 0.13 ENSDART00000146473
retreg2
reticulophagy regulator family member 2
chr14_-_30905963 0.13 ENSDART00000183543
ENSDART00000186441
si:ch211-126c2.4
si:ch211-126c2.4
chr10_+_29770120 0.13 ENSDART00000100032
ENSDART00000193205
hyou1
hypoxia up-regulated 1
chr22_-_26852516 0.12 ENSDART00000005829
gde1
glycerophosphodiester phosphodiesterase 1
chr7_+_18878973 0.12 ENSDART00000037846
focad
focadhesin
chr8_-_16650595 0.12 ENSDART00000135319
osbpl9
oxysterol binding protein-like 9
chr18_-_39200557 0.12 ENSDART00000132367
ENSDART00000183672
si:ch211-235f12.2
mapk6
si:ch211-235f12.2
mitogen-activated protein kinase 6
chr11_-_3308569 0.12 ENSDART00000036581
cdk2
cyclin-dependent kinase 2
chr16_+_27345383 0.12 ENSDART00000078250
ENSDART00000162857
nr4a3
nuclear receptor subfamily 4, group A, member 3
chr14_-_30490465 0.11 ENSDART00000173107
micu3b
mitochondrial calcium uptake family, member 3b
chr21_+_4320769 0.11 ENSDART00000168553
HTRA2 (1 of many)
si:dkey-84o3.4
chr13_-_30161684 0.10 ENSDART00000040409
ppa1b
pyrophosphatase (inorganic) 1b
chr11_+_44356707 0.09 ENSDART00000165219
srsf7b
serine/arginine-rich splicing factor 7b
chr20_-_4031475 0.09 ENSDART00000112053
fam89a
family with sequence similarity 89, member A
chr19_-_3783141 0.08 ENSDART00000162260
btr19
bloodthirsty-related gene family, member 19
chr12_+_30109698 0.08 ENSDART00000042572
ENSDART00000153025
ablim1b
actin binding LIM protein 1b
chr23_+_21261313 0.08 ENSDART00000104268
ENSDART00000159046
emc1
ER membrane protein complex subunit 1
chr25_-_7999756 0.08 ENSDART00000159908
camk1db
calcium/calmodulin-dependent protein kinase 1Db
chr10_-_7913591 0.07 ENSDART00000139661
slc35e4
solute carrier family 35, member E4
chr3_-_27065477 0.07 ENSDART00000185660
atf7ip2
activating transcription factor 7 interacting protein 2
chr12_-_4540564 0.07 ENSDART00000106566
CABZ01030107.1

chr15_+_15771418 0.07 ENSDART00000153831
si:ch211-33e4.3
si:ch211-33e4.3
chr11_+_44356504 0.06 ENSDART00000160678
srsf7b
serine/arginine-rich splicing factor 7b
chr21_-_18932761 0.06 ENSDART00000140129
med15
mediator complex subunit 15
chr20_-_48898371 0.06 ENSDART00000170617
xrn2
5'-3' exoribonuclease 2
chr24_-_25166416 0.06 ENSDART00000111552
ENSDART00000169495
phldb2b
pleckstrin homology-like domain, family B, member 2b
chr10_+_27068251 0.06 ENSDART00000012717
ehd1b
EH-domain containing 1b
chr20_-_48898560 0.05 ENSDART00000163071
xrn2
5'-3' exoribonuclease 2
chr11_-_3613558 0.05 ENSDART00000163578
dnajc16l
DnaJ (Hsp40) homolog, subfamily C, member 16 like
chr20_+_50956369 0.05 ENSDART00000170854
gphnb
gephyrin b
chr7_-_13648635 0.05 ENSDART00000148957
ENSDART00000130967
spg21
spastic paraplegia 21 (autosomal recessive, Mast syndrome)
chr19_+_5480327 0.05 ENSDART00000148794
jupb
junction plakoglobin b
chr3_+_52737565 0.04 ENSDART00000108639
gmip
GEM interacting protein
chr13_+_43650632 0.03 ENSDART00000141024
zfyve21
zinc finger, FYVE domain containing 21
chr21_-_43171249 0.03 ENSDART00000021037
ENSDART00000148630
hspa4a
heat shock protein 4a
chr6_+_49081141 0.03 ENSDART00000131080
ENSDART00000050000
tshba
thyroid stimulating hormone, beta subunit, a
chr20_-_42534153 0.03 ENSDART00000061122
rfx6
regulatory factor X, 6
chr21_-_19330333 0.02 ENSDART00000101462
mrps18c
mitochondrial ribosomal protein S18C
chr22_+_31330485 0.02 ENSDART00000192585
grip2b
glutamate receptor interacting protein 2b
chr2_-_45504798 0.02 ENSDART00000131412
gpsm2
G protein signaling modulator 2
chr10_-_4961923 0.02 ENSDART00000050177
ENSDART00000146066
snx30
sorting nexin family member 30
chr1_+_12335816 0.01 ENSDART00000067086
nansa
N-acetylneuraminic acid synthase a
chr9_+_38369872 0.00 ENSDART00000193914
plcd4b
phospholipase C, delta 4b
chr8_+_16726386 0.00 ENSDART00000144621
smim15
small integral membrane protein 15
chr7_-_35083184 0.00 ENSDART00000100253
ENSDART00000135250
ENSDART00000173511
agrp
agouti related neuropeptide
chr8_-_46457233 0.00 ENSDART00000113214
sult1st7
sulfotransferase family 1, cytosolic sulfotransferase 7

Network of associatons between targets according to the STRING database.

First level regulatory network of sox7

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0071586 CAAX-box protein processing(GO:0071586) CAAX-box protein maturation(GO:0080120)
0.0 0.2 GO:0006121 mitochondrial electron transport, succinate to ubiquinone(GO:0006121)
0.0 0.3 GO:1990504 dense core granule exocytosis(GO:1990504)
0.0 0.4 GO:0046501 protoporphyrinogen IX biosynthetic process(GO:0006782) protoporphyrinogen IX metabolic process(GO:0046501)
0.0 0.2 GO:0045634 regulation of melanocyte differentiation(GO:0045634)
0.0 0.1 GO:0006537 glutamate biosynthetic process(GO:0006537) glutamine catabolic process(GO:0006543)
0.0 0.3 GO:0001678 cellular glucose homeostasis(GO:0001678)
0.0 0.0 GO:0007529 establishment of synaptic specificity at neuromuscular junction(GO:0007529) molybdenum incorporation into molybdenum-molybdopterin complex(GO:0018315) metal incorporation into metallo-molybdopterin complex(GO:0042040) glycine receptor clustering(GO:0072579)
0.0 0.2 GO:0032196 transposition(GO:0032196)
0.0 0.1 GO:0043435 response to corticotropin-releasing hormone(GO:0043435) cellular response to corticotropin-releasing hormone stimulus(GO:0071376)
0.0 0.1 GO:0070979 protein K11-linked ubiquitination(GO:0070979)
0.0 0.2 GO:0006003 fructose 2,6-bisphosphate metabolic process(GO:0006003)
0.0 0.3 GO:0002098 tRNA wobble uridine modification(GO:0002098)
0.0 0.0 GO:0034260 negative regulation of GTPase activity(GO:0034260)
0.0 0.2 GO:0090110 cargo loading into COPII-coated vesicle(GO:0090110)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0034663 endoplasmic reticulum chaperone complex(GO:0034663)
0.0 0.2 GO:0005749 mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)(GO:0005749) succinate dehydrogenase complex (ubiquinone)(GO:0045257) respiratory chain complex II(GO:0045273) succinate dehydrogenase complex(GO:0045281) fumarate reductase complex(GO:0045283)
0.0 0.1 GO:0005782 peroxisomal matrix(GO:0005782) microbody lumen(GO:0031907)
0.0 0.3 GO:0030667 secretory granule membrane(GO:0030667)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0008311 double-stranded DNA exodeoxyribonuclease activity(GO:0008309) double-stranded DNA 3'-5' exodeoxyribonuclease activity(GO:0008311)
0.0 0.4 GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor(GO:0016634)
0.0 0.2 GO:0004340 glucokinase activity(GO:0004340) hexokinase activity(GO:0004396) glucose binding(GO:0005536) fructokinase activity(GO:0008865) mannokinase activity(GO:0019158)
0.0 0.1 GO:0004534 5'-3' exoribonuclease activity(GO:0004534)
0.0 0.1 GO:0004427 inorganic diphosphatase activity(GO:0004427)
0.0 0.3 GO:0005220 inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity(GO:0005220)
0.0 0.2 GO:0048039 ubiquinone binding(GO:0048039)
0.0 0.1 GO:0004359 glutaminase activity(GO:0004359)
0.0 0.1 GO:0004176 ATP-dependent peptidase activity(GO:0004176)
0.0 0.0 GO:0061598 molybdopterin adenylyltransferase activity(GO:0061598) molybdopterin molybdotransferase activity(GO:0061599)
0.0 0.2 GO:0001102 RNA polymerase II activating transcription factor binding(GO:0001102)
0.0 0.2 GO:0003873 6-phosphofructo-2-kinase activity(GO:0003873)
0.0 0.1 GO:0030332 cyclin binding(GO:0030332)
0.0 0.1 GO:0035259 glucocorticoid receptor binding(GO:0035259)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.5 ST IL 13 PATHWAY Interleukin 13 (IL-13) Pathway

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.4 REACTOME METABOLISM OF PORPHYRINS Genes involved in Metabolism of porphyrins