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PRJNA195909:zebrafish embryo and larva development

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Results for snai1b+snai3

Z-value: 0.82

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Transcription factors associated with snai1b+snai3

Gene Symbol Gene ID Gene Info
snai3
ENSDARG00000031243 snail family zinc finger 3
snai1b
ENSDARG00000046019 snail family zinc finger 1b

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
snai3dr11_v1_chr7_+_55112922_551129220.713.2e-02Click!
snai1bdr11_v1_chr23_-_2513300_2513300-0.694.0e-02Click!

Activity profile of snai1b+snai3 motif

Sorted Z-values of snai1b+snai3 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr7_+_58751504 2.35 ENSDART00000024185
zgc:56231
zgc:56231
chr21_-_21465111 1.71 ENSDART00000141487
nectin3b
nectin cell adhesion molecule 3b
chr21_-_43666420 1.56 ENSDART00000139008
ENSDART00000183996
ENSDART00000183395
si:dkey-229d11.3
si:dkey-229d11.5
si:dkey-229d11.3
si:dkey-229d11.5
chr14_+_15155684 1.54 ENSDART00000167966
zgc:158852
zgc:158852
chr20_-_23426339 1.51 ENSDART00000004625
zar1
zygote arrest 1
chr19_-_35439237 1.40 ENSDART00000145883
anln
anillin, actin binding protein
chr17_+_1360192 1.34 ENSDART00000184561
siva1
SIVA1, apoptosis-inducing factor
chr20_-_43743700 1.27 ENSDART00000100620
si:dkeyp-50f7.2
si:dkeyp-50f7.2
chr13_+_35955562 1.25 ENSDART00000137377
si:ch211-67f13.7
si:ch211-67f13.7
chr10_+_37173029 1.15 ENSDART00000136510
ksr1a
kinase suppressor of ras 1a
chr5_+_6670945 1.15 ENSDART00000185686
pxna
paxillin a
chr13_-_11800281 1.05 ENSDART00000079392
zmp:0000000662
zmp:0000000662
chr13_-_39254 1.05 ENSDART00000093222
gtf2a1l
general transcription factor IIA, 1-like
chr17_+_24590177 1.00 ENSDART00000092941
rlf
rearranged L-myc fusion
chr13_-_36525982 0.98 ENSDART00000114744
pacs2
phosphofurin acidic cluster sorting protein 2
chr17_-_11151655 0.96 ENSDART00000156383
CU179699.1

chr5_-_23696926 0.90 ENSDART00000021462
rnf128a
ring finger protein 128a
chr10_+_1052591 0.90 ENSDART00000123405
unc5c
unc-5 netrin receptor C
chr11_-_43473824 0.87 ENSDART00000179561
tmem63bb
transmembrane protein 63Bb
chr22_-_17677947 0.86 ENSDART00000139911
tjp3
tight junction protein 3
chr13_+_2448251 0.85 ENSDART00000188361
arfgef3
ARFGEF family member 3
chr15_+_784149 0.85 ENSDART00000155114
znf970
zinc finger protein 970
chr22_-_26251563 0.82 ENSDART00000060888
ENSDART00000142821
ccdc130
coiled-coil domain containing 130
chr17_+_24936059 0.81 ENSDART00000082438
dlgap2a
discs, large (Drosophila) homolog-associated protein 2a
chr5_-_12031174 0.80 ENSDART00000159896
castor1
cytosolic arginine sensor for mTORC1 subunit 1
chr18_+_45666489 0.76 ENSDART00000180147
ENSDART00000151351
prrg4
proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)
chr13_+_1381953 0.75 ENSDART00000019983
rab23
RAB23, member RAS oncogene family
chr13_-_21672131 0.70 ENSDART00000067537
elovl6l
ELOVL family member 6, elongation of long chain fatty acids like
chr21_-_35325466 0.69 ENSDART00000134780
ENSDART00000145930
ENSDART00000076715
ENSDART00000065341
ENSDART00000162189
ublcp1
ubiquitin-like domain containing CTD phosphatase 1
chr25_+_27744293 0.68 ENSDART00000103519
ENSDART00000149456
wasla
Wiskott-Aldrich syndrome-like a
chr14_-_26482096 0.67 ENSDART00000187280
smad5
SMAD family member 5
chr16_+_41060161 0.67 ENSDART00000141130
scap
SREBF chaperone
chr1_-_55058795 0.67 ENSDART00000187293
peli1a
pellino E3 ubiquitin protein ligase 1a
chr18_+_6641542 0.65 ENSDART00000160379
c2cd5
C2 calcium-dependent domain containing 5
chr12_+_16953415 0.64 ENSDART00000020824
pank1b
pantothenate kinase 1b
chr11_+_6902946 0.60 ENSDART00000144006
crtc1b
CREB regulated transcription coactivator 1b
chr10_-_33588106 0.60 ENSDART00000155634
eva1c
eva-1 homolog C (C. elegans)
chr7_+_20917966 0.59 ENSDART00000129161
wrap53
WD repeat containing, antisense to TP53
chr8_+_8196087 0.58 ENSDART00000026965
plxnb3
plexin B3
chr10_-_38468847 0.57 ENSDART00000133914
gdpd5a
glycerophosphodiester phosphodiesterase domain containing 5a
chr3_+_14641962 0.54 ENSDART00000091070
zgc:158403
zgc:158403
chr8_+_247163 0.53 ENSDART00000122378
cep120
centrosomal protein 120
chr9_+_331425 0.52 ENSDART00000170312
actr5
ARP5 actin related protein 5 homolog
chr22_+_22438783 0.51 ENSDART00000147825
kif14
kinesin family member 14
chr2_+_44687147 0.51 ENSDART00000141605
yeats2
YEATS domain containing 2
chr15_-_434503 0.49 ENSDART00000122286
CABZ01056629.1

chr7_+_38962459 0.49 ENSDART00000173851
dgkza
diacylglycerol kinase, zeta a
chr1_+_10019653 0.47 ENSDART00000190227
trim2b
tripartite motif containing 2b
chr6_-_10788065 0.46 ENSDART00000190968
wipf1b
WAS/WASL interacting protein family, member 1b
chr3_-_42016693 0.44 ENSDART00000184741
ttyh3a
tweety family member 3a
chr24_+_36018164 0.44 ENSDART00000182815
ENSDART00000126941
gnal2
guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type 2
chr6_-_37749711 0.40 ENSDART00000078324
nipa1
non imprinted in Prader-Willi/Angelman syndrome 1
chr22_-_3595439 0.38 ENSDART00000083308
ptprsa
protein tyrosine phosphatase, receptor type, s, a
chr5_-_22052852 0.37 ENSDART00000002938
mtmr8
myotubularin related protein 8
chr13_+_2894536 0.36 ENSDART00000183678
CABZ01087629.1

chr13_-_9119867 0.35 ENSDART00000137255
si:dkey-112g5.15
si:dkey-112g5.15
chr7_+_30988570 0.31 ENSDART00000180613
ENSDART00000185625
tjp1a
tight junction protein 1a
chr8_-_10949847 0.30 ENSDART00000123209
pqlc2
PQ loop repeat containing 2
chr12_-_2869565 0.29 ENSDART00000152772
zdhhc16b
zinc finger, DHHC-type containing 16b
chr9_-_28255029 0.29 ENSDART00000160387
ccnyl1
cyclin Y-like 1
chr24_+_19578935 0.28 ENSDART00000137175
sulf1
sulfatase 1
chr18_-_5781922 0.28 ENSDART00000128722
RGS9BP
si:ch73-167i17.6
chr10_+_9601587 0.26 ENSDART00000147997
rc3h2
ring finger and CCCH-type domains 2
chr6_-_10728057 0.22 ENSDART00000002247
sp3b
Sp3b transcription factor
chr8_+_20140321 0.21 ENSDART00000012120
acsbg2
acyl-CoA synthetase bubblegum family member 2
chr24_+_40860320 0.20 ENSDART00000161351
gorasp1b
golgi reassembly stacking protein 1b
chr7_-_50367326 0.18 ENSDART00000141926
prc1b
protein regulator of cytokinesis 1b
chr10_-_94184 0.18 ENSDART00000146125
ttc3
tetratricopeptide repeat domain 3
chr2_+_26237322 0.15 ENSDART00000030520
palm1b
paralemmin 1b
chr23_+_34047413 0.15 ENSDART00000143933
ENSDART00000123925
ENSDART00000176139
chchd6a
coiled-coil-helix-coiled-coil-helix domain containing 6a
chr25_-_17395315 0.14 ENSDART00000064596
cyp2x8
cytochrome P450, family 2, subfamily X, polypeptide 8
chr6_-_10728921 0.13 ENSDART00000151484
sp3b
Sp3b transcription factor
chr14_-_38865800 0.12 ENSDART00000173047
gsr
glutathione reductase
chr17_+_50655619 0.12 ENSDART00000184917
ENSDART00000167638
ddhd1a
DDHD domain containing 1a
chr22_+_7439186 0.09 ENSDART00000190667
zgc:92041
zgc:92041
chr1_-_43892349 0.06 ENSDART00000148416
tacr3a
tachykinin receptor 3a
chr14_-_15155384 0.05 ENSDART00000172666
uvssa
UV-stimulated scaffold protein A
chr2_-_42628028 0.05 ENSDART00000179866
myo10
myosin X
chr22_+_2417105 0.04 ENSDART00000106415
zgc:113220
zgc:113220
chr21_-_18648861 0.04 ENSDART00000112113
si:dkey-112m2.1
si:dkey-112m2.1
chr20_-_21672970 0.03 ENSDART00000133286
si:ch211-207i1.2
si:ch211-207i1.2
chr3_+_56276346 0.03 ENSDART00000157770
PRKCA
si:ch73-374l24.1
chr12_+_48784731 0.03 ENSDART00000158348
zmiz1b
zinc finger, MIZ-type containing 1b
chr23_-_24047054 0.01 ENSDART00000184308
ENSDART00000185902
CR925720.1

Network of associatons between targets according to the STRING database.

First level regulatory network of snai1b+snai3

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 1.4 GO:0008356 asymmetric cell division(GO:0008356)
0.1 0.5 GO:0010825 positive regulation of centrosome duplication(GO:0010825)
0.1 0.7 GO:0008592 regulation of Toll signaling pathway(GO:0008592)
0.1 0.6 GO:0010828 positive regulation of glucose transport(GO:0010828)
0.1 0.6 GO:0030576 nuclear body organization(GO:0030575) Cajal body organization(GO:0030576)
0.1 1.4 GO:0061055 myotome development(GO:0061055)
0.1 0.4 GO:0007191 adenylate cyclase-activating dopamine receptor signaling pathway(GO:0007191)
0.1 0.6 GO:0032793 positive regulation of CREB transcription factor activity(GO:0032793)
0.1 0.9 GO:0030104 water homeostasis(GO:0030104)
0.1 0.9 GO:0038007 netrin-activated signaling pathway(GO:0038007)
0.1 1.3 GO:0007339 binding of sperm to zona pellucida(GO:0007339) egg coat formation(GO:0035803) regulation of acrosome reaction(GO:0060046) positive regulation of acrosome reaction(GO:2000344)
0.1 0.6 GO:0035188 hatching(GO:0035188) organism emergence from protective structure(GO:0071684)
0.1 0.3 GO:0045737 positive regulation of cyclin-dependent protein serine/threonine kinase activity(GO:0045737) positive regulation of cyclin-dependent protein kinase activity(GO:1904031)
0.1 1.7 GO:0007286 spermatid development(GO:0007286)
0.1 0.8 GO:1904262 negative regulation of TORC1 signaling(GO:1904262)
0.1 0.7 GO:0071501 response to sterol depletion(GO:0006991) SREBP signaling pathway(GO:0032933) cellular response to sterol depletion(GO:0071501)
0.0 0.8 GO:0098962 regulation of postsynaptic neurotransmitter receptor activity(GO:0098962)
0.0 0.6 GO:0015937 coenzyme A biosynthetic process(GO:0015937)
0.0 0.7 GO:2000601 positive regulation of actin nucleation(GO:0051127) positive regulation of Arp2/3 complex-mediated actin nucleation(GO:2000601)
0.0 0.7 GO:2000223 regulation of BMP signaling pathway involved in heart jogging(GO:2000223)
0.0 0.7 GO:0034625 fatty acid elongation, saturated fatty acid(GO:0019367) fatty acid elongation, unsaturated fatty acid(GO:0019368) fatty acid elongation, monounsaturated fatty acid(GO:0034625) fatty acid elongation, polyunsaturated fatty acid(GO:0034626)
0.0 0.3 GO:0036058 filtration diaphragm assembly(GO:0036058) slit diaphragm assembly(GO:0036060)
0.0 0.6 GO:1902285 semaphorin-plexin signaling pathway involved in neuron projection guidance(GO:1902285) semaphorin-plexin signaling pathway involved in axon guidance(GO:1902287)
0.0 0.7 GO:0035469 determination of pancreatic left/right asymmetry(GO:0035469)
0.0 0.4 GO:0099560 synaptic membrane adhesion(GO:0099560)
0.0 0.4 GO:0015693 magnesium ion transport(GO:0015693)
0.0 1.0 GO:0006367 transcription initiation from RNA polymerase II promoter(GO:0006367)
0.0 0.5 GO:0007205 protein kinase C-activating G-protein coupled receptor signaling pathway(GO:0007205)
0.0 0.8 GO:0032012 ARF protein signal transduction(GO:0032011) regulation of ARF protein signal transduction(GO:0032012)
0.0 0.4 GO:0010507 negative regulation of autophagy(GO:0010507)
0.0 0.2 GO:0051256 mitotic spindle elongation(GO:0000022) spindle elongation(GO:0051231) mitotic spindle midzone assembly(GO:0051256)
0.0 1.5 GO:0017148 negative regulation of translation(GO:0017148)
0.0 0.2 GO:0042759 long-chain fatty acid biosynthetic process(GO:0042759)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 1.0 GO:0005672 transcription factor TFIIA complex(GO:0005672)
0.2 1.4 GO:0005826 actomyosin contractile ring(GO:0005826)
0.1 0.8 GO:0061700 GATOR2 complex(GO:0061700)
0.1 0.8 GO:0071014 post-mRNA release spliceosomal complex(GO:0071014)
0.0 0.7 GO:0071144 SMAD2-SMAD3 protein complex(GO:0071144)
0.0 2.9 GO:0005871 kinesin complex(GO:0005871)
0.0 0.6 GO:0015030 Cajal body(GO:0015030)
0.0 0.5 GO:0031011 Ino80 complex(GO:0031011) DNA helicase complex(GO:0033202)
0.0 0.6 GO:0002116 semaphorin receptor complex(GO:0002116)
0.0 2.9 GO:0043296 apical junction complex(GO:0043296)
0.0 0.8 GO:0098978 glutamatergic synapse(GO:0098978)
0.0 0.7 GO:0012507 ER to Golgi transport vesicle membrane(GO:0012507)
0.0 0.2 GO:1990023 mitotic spindle midzone(GO:1990023)
0.0 0.1 GO:0061617 MICOS complex(GO:0061617)
0.0 0.7 GO:0005776 autophagosome(GO:0005776)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.6 GO:0034618 arginine binding(GO:0034618)
0.1 0.6 GO:0004594 pantothenate kinase activity(GO:0004594)
0.1 0.9 GO:0005042 netrin receptor activity(GO:0005042)
0.1 0.6 GO:0008140 cAMP response element binding protein binding(GO:0008140)
0.1 1.3 GO:0032190 acrosin binding(GO:0032190)
0.0 0.4 GO:0072320 volume-sensitive chloride channel activity(GO:0072320)
0.0 0.3 GO:0035613 RNA stem-loop binding(GO:0035613)
0.0 0.4 GO:0052629 phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity(GO:0052629)
0.0 0.7 GO:0102337 fatty acid elongase activity(GO:0009922) 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338)
0.0 0.7 GO:0070411 I-SMAD binding(GO:0070411)
0.0 0.9 GO:0005227 calcium activated cation channel activity(GO:0005227)
0.0 1.3 GO:0032813 tumor necrosis factor receptor superfamily binding(GO:0032813)
0.0 2.9 GO:0003777 microtubule motor activity(GO:0003777)
0.0 0.1 GO:0004362 glutathione-disulfide reductase activity(GO:0004362)
0.0 0.5 GO:0004143 diacylglycerol kinase activity(GO:0004143)
0.0 0.4 GO:0015095 magnesium ion transmembrane transporter activity(GO:0015095)
0.0 0.6 GO:0017154 semaphorin receptor activity(GO:0017154)
0.0 1.0 GO:0044325 ion channel binding(GO:0044325)
0.0 0.3 GO:0008449 N-acetylglucosamine-6-sulfatase activity(GO:0008449)
0.0 0.2 GO:0016405 CoA-ligase activity(GO:0016405)
0.0 0.4 GO:0031683 G-protein beta/gamma-subunit complex binding(GO:0031683)
0.0 2.9 GO:0050839 cell adhesion molecule binding(GO:0050839)
0.0 0.7 GO:0032934 sterol binding(GO:0032934)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.7 PID ALK2 PATHWAY ALK2 signaling events
0.0 0.7 SA CASPASE CASCADE Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade.
0.0 0.9 PID NETRIN PATHWAY Netrin-mediated signaling events
0.0 0.7 PID HEDGEHOG GLI PATHWAY Hedgehog signaling events mediated by Gli proteins
0.0 0.3 PID CONE PATHWAY Visual signal transduction: Cones

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.7 REACTOME SIGNALING BY BMP Genes involved in Signaling by BMP
0.0 0.6 REACTOME OTHER SEMAPHORIN INTERACTIONS Genes involved in Other semaphorin interactions
0.0 0.9 REACTOME NETRIN1 SIGNALING Genes involved in Netrin-1 signaling
0.0 0.6 REACTOME EXTENSION OF TELOMERES Genes involved in Extension of Telomeres