PRJNA195909:zebrafish embryo and larva development

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
prox2 Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000041952	prospero homeobox 2
prox1a Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000055158	prospero homeobox 1a
prox3 Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000088810	prospero homeobox 3
prox3 Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000113014	prospero homeobox 3
prox2 Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000117137	prospero homeobox 2

Gene	Promoter	Pearson corr. coef.	P-value	Plot
prox2	dr11_v1_chr17_-_52521002_52521002	0.36	3.5e-01	Click!
prox1b	dr11_v1_chr7_-_19940473_19940473	0.30	4.3e-01	Click!
prox1a	dr11_v1_chr17_-_32865788_32865788	0.24	5.4e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr7_+_29952169 Show fit	1.02	ENSDART00000173540 ENSDART00000173940 ENSDART00000173906 ENSDART00000173772 ENSDART00000173506 ENSDART00000039657	tpma Links NCBI UniProt ZFIN ENSEMBL Google Show fit	alpha-tropomyosin
chr7_+_29951997 Show fit	0.82	ENSDART00000173453	tpma Links NCBI UniProt ZFIN ENSEMBL Google Show fit	alpha-tropomyosin
chr10_-_31782616 Show fit	0.63	ENSDART00000128839	fez1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	fasciculation and elongation protein zeta 1 (zygin I)
chr9_-_23033818 Show fit	0.62	ENSDART00000022392	rnd3b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Rho family GTPase 3b
chr2_+_2470687 Show fit	0.61	ENSDART00000184024 ENSDART00000061955	myl13 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	myosin, light chain 13
chr1_+_44442140 Show fit	0.52	ENSDART00000190592	crybb1l2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	crystallin, beta B1, like 2
chr15_+_32711663 Show fit	0.45	ENSDART00000157854 ENSDART00000167515	postnb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	periostin, osteoblast specific factor b
chr2_+_25658112 Show fit	0.42	ENSDART00000051234	tnika Links NCBI UniProt ZFIN ENSEMBL Google Show fit	TRAF2 and NCK interacting kinase a
chr19_+_42886413 Show fit	0.39	ENSDART00000151298	arpp21 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cAMP-regulated phosphoprotein, 21
chr9_-_42696408 Show fit	0.38	ENSDART00000144744	col5a2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	collagen, type V, alpha 2a
chr3_-_59981162 Show fit	0.38	ENSDART00000128790	cdr2l Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cerebellar degeneration-related protein 2-like
chr25_+_22587306 Show fit	0.36	ENSDART00000067479	stra6 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	stimulated by retinoic acid 6
chr20_-_40717900 Show fit	0.34	ENSDART00000181663	cx43 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	connexin 43
chr11_-_24681292 Show fit	0.31	ENSDART00000089601	olfml3b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	olfactomedin-like 3b
chr23_+_35672542 Show fit	0.30	ENSDART00000046268	pmelb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	premelanosome protein b
chr19_+_46372115 Show fit	0.30	ENSDART00000163935	med30 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	mediator complex subunit 30
chr5_+_27440325 Show fit	0.29	ENSDART00000185815 ENSDART00000144013	loxl2b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	lysyl oxidase-like 2b
chr21_-_13972745 Show fit	0.29	ENSDART00000143874	akna Links NCBI UniProt ZFIN ENSEMBL Google Show fit	AT-hook transcription factor
chr19_-_21766461 Show fit	0.28	ENSDART00000104279	znf516 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zinc finger protein 516
chr15_+_32249062 Show fit	0.26	ENSDART00000133867 ENSDART00000152545 ENSDART00000082315 ENSDART00000152513 ENSDART00000152139	arfip2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ADP-ribosylation factor interacting protein 2a
chr6_+_3934738 Show fit	0.25	ENSDART00000159673	dync1i2b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	dynein, cytoplasmic 1, intermediate chain 2b
chr11_-_23219367 Show fit	0.25	ENSDART00000003646	optc Links NCBI UniProt ZFIN ENSEMBL Google Show fit	opticin
chr12_-_31422433 Show fit	0.25	ENSDART00000186075 ENSDART00000153172 ENSDART00000066256	vti1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	vesicle transport through interaction with t-SNAREs 1A
chr17_-_5583345 Show fit	0.24	ENSDART00000035944	clic5a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	chloride intracellular channel 5a
chr12_-_23365737 Show fit	0.24	ENSDART00000170376	mpp7a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	membrane protein, palmitoylated 7a (MAGUK p55 subfamily member 7)
chr21_+_22124736 Show fit	0.24	ENSDART00000130179 ENSDART00000172573	cul5b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cullin 5b
chr1_-_59065217 Show fit	0.24	ENSDART00000188972	CABZ01080042.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr3_+_22578369 Show fit	0.22	ENSDART00000187695 ENSDART00000182678 ENSDART00000112270	tanc2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2a
chr12_+_27117609 Show fit	0.22	ENSDART00000076154	hoxb8b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	homeobox B8b
chr23_+_36118738 Show fit	0.22	ENSDART00000139319	hoxc5a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	homeobox C5a
chr5_-_62306819 Show fit	0.22	ENSDART00000168993	spata22 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	spermatogenesis associated 22
chr9_+_21401189 Show fit	0.21	ENSDART00000062669	cx30.3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	connexin 30.3
chr23_+_16889352 Show fit	0.21	ENSDART00000145275	si:dkey-147f3.8 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-147f3.8
chr2_+_6885852 Show fit	0.20	ENSDART00000016607	rgs5b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	regulator of G protein signaling 5b
chr2_+_50722439 Show fit	0.20	ENSDART00000188927	fyco1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	FYVE and coiled-coil domain containing 1b
chr15_-_23475051 Show fit	0.19	ENSDART00000152460	nlrx1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	NLR family member X1
chr17_+_15674052 Show fit	0.18	ENSDART00000156726	bach2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	BTB and CNC homology 1, basic leucine zipper transcription factor 2a
chr23_+_13124085 Show fit	0.18	ENSDART00000139475	samd10b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	sterile alpha motif domain containing 10b
chr14_+_9287683 Show fit	0.17	ENSDART00000122485	msnb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	moesin b
chr3_+_21200763 Show fit	0.15	ENSDART00000067841	zgc:112038 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:112038
chr8_-_47800754 Show fit	0.15	ENSDART00000115050 ENSDART00000133669	kank3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	KN motif and ankyrin repeat domains 3
chr19_-_13950231 Show fit	0.15	ENSDART00000168665	sh3bgrl3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	SH3 domain binding glutamate-rich protein like 3
chr1_-_9485939 Show fit	0.15	ENSDART00000157814	micall2b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	mical-like 2b
chr1_-_9486214 Show fit	0.14	ENSDART00000137821	micall2b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	mical-like 2b
chr23_+_216012 Show fit	0.14	ENSDART00000181115 ENSDART00000004678 ENSDART00000190439 ENSDART00000189322	PDZD4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch73-162j3.4
chr23_+_45845423 Show fit	0.13	ENSDART00000183404	lmnl3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	lamin L3
chr19_-_31042570 Show fit	0.13	ENSDART00000144337 ENSDART00000136213 ENSDART00000133101 ENSDART00000190949	bzw2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	basic leucine zipper and W2 domains 2
chr7_+_57866292 Show fit	0.13	ENSDART00000138757	camk2d1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	calcium/calmodulin-dependent protein kinase (CaM kinase) II delta 1
chr23_+_21663631 Show fit	0.13	ENSDART00000066125	dhrs3a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	dehydrogenase/reductase (SDR family) member 3a
chr10_+_43037064 Show fit	0.11	ENSDART00000160159	atg10 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ATG10 autophagy related 10 homolog (S. cerevisiae)
chr16_+_39196727 Show fit	0.10	ENSDART00000017017	zdhhc3a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zinc finger, DHHC-type containing 3a
chr19_-_22621811 Show fit	0.10	ENSDART00000090669	pleca Links NCBI UniProt ZFIN ENSEMBL Google Show fit	plectin a
chr8_+_47219107 Show fit	0.10	ENSDART00000146018 ENSDART00000075068	mthfr Links NCBI UniProt ZFIN ENSEMBL Google Show fit	methylenetetrahydrofolate reductase (NAD(P)H)
chr14_-_30971264 Show fit	0.10	ENSDART00000010512	zgc:92907 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:92907
chr8_+_11325310 Show fit	0.09	ENSDART00000142577	fxn Links NCBI UniProt ZFIN ENSEMBL Google Show fit	frataxin
chr5_+_13870340 Show fit	0.08	ENSDART00000160690	hk2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	hexokinase 2
chr23_-_13877898 Show fit	0.07	ENSDART00000138696	g6pd Links NCBI UniProt ZFIN ENSEMBL Google Show fit	glucose-6-phosphate dehydrogenase
chr25_+_8407892 Show fit	0.07	ENSDART00000153536	muc5.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	mucin 5.2
chr10_-_38316134 Show fit	0.07	ENSDART00000149580	nrip1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	nuclear receptor interacting protein 1b
chr4_+_20177526 Show fit	0.07	ENSDART00000017947 ENSDART00000135451	ccdc146 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	coiled-coil domain containing 146
chr6_+_11250033 Show fit	0.07	ENSDART00000065411 ENSDART00000132677	atg9a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ATG9 autophagy related 9 homolog A (S. cerevisiae)
chr5_+_22510639 Show fit	0.07	ENSDART00000080919	rpl36a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ribosomal protein L36A
chr10_+_29431529 Show fit	0.07	ENSDART00000158154	dlg2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	discs, large homolog 2 (Drosophila)
chrM_+_9052 Show fit	0.06	ENSDART00000093612	mt-atp6 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ATP synthase 6, mitochondrial
chr7_-_44604540 Show fit	0.06	ENSDART00000149186	tk2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	thymidine kinase 2, mitochondrial
chr7_-_44605050 Show fit	0.06	ENSDART00000148471 ENSDART00000149072	tk2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	thymidine kinase 2, mitochondrial
chr7_+_19562045 Show fit	0.06	ENSDART00000077545	slc7a7 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	solute carrier family 7 (amino acid transporter light chain, y+L system), member 7
chr17_-_20979077 Show fit	0.06	ENSDART00000006676	phyhipla Links NCBI UniProt ZFIN ENSEMBL Google Show fit	phytanoyl-CoA 2-hydroxylase interacting protein-like a
chr10_-_20637098 Show fit	0.06	ENSDART00000080391	sprn2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	shadow of prion protein 2
chr20_-_54014373 Show fit	0.06	ENSDART00000152934	si:dkey-241l7.6 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-241l7.6
chr6_-_34006917 Show fit	0.05	ENSDART00000190702 ENSDART00000184003	tie1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	tyrosine kinase with immunoglobulin-like and EGF-like domains 1
chr20_+_38201644 Show fit	0.05	ENSDART00000022694	ehd3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	EH-domain containing 3
chr8_+_2773776 Show fit	0.05	ENSDART00000156796 ENSDART00000154529 ENSDART00000155092	sh3glb2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	SH3-domain GRB2-like endophilin B2a
chr19_+_19989380 Show fit	0.05	ENSDART00000142841	osbpl3a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	oxysterol binding protein-like 3a
chr8_-_49345388 Show fit	0.05	ENSDART00000053203	plp2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	proteolipid protein 2
chr18_-_44611252 Show fit	0.04	ENSDART00000173095	spred3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	sprouty-related, EVH1 domain containing 3
chr5_+_37517800 Show fit	0.04	ENSDART00000048107	FP102018.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Danio rerio latent transforming growth factor beta binding protein 3 (ltbp3), mRNA.
chr19_-_22621991 Show fit	0.04	ENSDART00000175106	pleca Links NCBI UniProt ZFIN ENSEMBL Google Show fit	plectin a
chr17_+_48164536 Show fit	0.03	ENSDART00000161750 ENSDART00000156923	plekhd1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	pleckstrin homology domain containing, family D (with coiled-coil domains) member 1
chr5_+_42136359 Show fit	0.03	ENSDART00000083731	trpv1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transient receptor potential cation channel, subfamily V, member 1
chr5_-_69707787 Show fit	0.03	ENSDART00000108820 ENSDART00000149692	dguok Links NCBI UniProt ZFIN ENSEMBL Google Show fit	deoxyguanosine kinase
chr8_+_30600386 Show fit	0.03	ENSDART00000164976	specc1la Links NCBI UniProt ZFIN ENSEMBL Google Show fit	sperm antigen with calponin homology and coiled-coil domains 1-like a
chr3_+_22335030 Show fit	0.03	ENSDART00000055676	zgc:103564 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:103564
chr21_+_21791343 Show fit	0.03	ENSDART00000151654	neu3.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	sialidase 3 (membrane sialidase), tandem duplicate 1
chr17_-_10059557 Show fit	0.03	ENSDART00000092209 ENSDART00000161243	baz1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	bromodomain adjacent to zinc finger domain, 1A
chr18_+_16750080 Show fit	0.03	ENSDART00000136320	rnf141 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ring finger protein 141
chr24_-_18809433 Show fit	0.03	ENSDART00000152009	arfgef1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ADP-ribosylation factor guanine nucleotide-exchange factor 1 (brefeldin A-inhibited)
chr1_-_37087966 Show fit	0.02	ENSDART00000172111 ENSDART00000160056	nr3c2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	nuclear receptor subfamily 3, group C, member 2
chr15_+_31735931 Show fit	0.02	ENSDART00000185681 ENSDART00000149137	rxfp2b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	relaxin/insulin-like family peptide receptor 2b
chr10_-_36254445 Show fit	0.02	ENSDART00000123571	or110-2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	odorant receptor, family D, subfamily 110, member 2
chr10_+_7719796 Show fit	0.02	ENSDART00000191795	ggcx Links NCBI UniProt ZFIN ENSEMBL Google Show fit	gamma-glutamyl carboxylase
chr17_-_37195354 Show fit	0.02	ENSDART00000190963	asxl2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	additional sex combs like transcriptional regulator 2
chr22_+_17286841 Show fit	0.01	ENSDART00000133176	FAM163A Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-171o17.8
chr7_+_7019911 Show fit	0.01	ENSDART00000172421	rbm14b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	RNA binding motif protein 14b
chr25_+_19947298 Show fit	0.01	ENSDART00000067648	kcna6a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	potassium voltage-gated channel, shaker-related, subfamily, member 6 a
chr17_+_5616826 Show fit	0.00	ENSDART00000178720	fam167aa Links NCBI UniProt ZFIN ENSEMBL Google Show fit	family with sequence similarity 167, member Aa
chr15_-_31177324 Show fit	0.00	ENSDART00000008854	wsb1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	WD repeat and SOCS box containing 1

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.3	GO:1902455	negative regulation of stem cell population maintenance(GO:1902455)
0.1	0.2	GO:0000711	meiotic DNA repair synthesis(GO:0000711)
0.1	0.4	GO:0071939	vitamin A transport(GO:0071938) vitamin A import(GO:0071939)
0.0	0.2	GO:1901098	positive regulation of autophagosome maturation(GO:1901098)
0.0	0.2	GO:0048280	vesicle fusion with Golgi apparatus(GO:0048280)
0.0	0.5	GO:0016203	muscle attachment(GO:0016203)
0.0	1.9	GO:0061515	myeloid cell development(GO:0061515)
0.0	0.3	GO:0032438	melanosome organization(GO:0032438)
0.0	0.3	GO:0034315	regulation of Arp2/3 complex-mediated actin nucleation(GO:0034315)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.4	GO:0005588	collagen type V trimer(GO:0005588)
0.1	0.2	GO:0031466	Cul5-RING ubiquitin ligase complex(GO:0031466)
0.0	0.3	GO:0005868	cytoplasmic dynein complex(GO:0005868)
0.0	1.9	GO:0005884	actin filament(GO:0005884)
0.0	0.3	GO:0032588	trans-Golgi network membrane(GO:0032588)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.4	GO:0034632	retinol transporter activity(GO:0034632)
0.0	0.1	GO:0019777	Atg12 transferase activity(GO:0019777)
0.0	0.1	GO:0004345	glucose-6-phosphate dehydrogenase activity(GO:0004345)
0.0	0.1	GO:0019107	myristoyltransferase activity(GO:0019107)
0.0	0.3	GO:0045503	dynein light chain binding(GO:0045503)
0.0	0.1	GO:0019136	deoxynucleoside kinase activity(GO:0019136)
0.0	0.3	GO:0004720	protein-lysine 6-oxidase activity(GO:0004720)
0.0	0.1	GO:0004745	retinol dehydrogenase activity(GO:0004745)
0.0	0.1	GO:0004396	glucokinase activity(GO:0004340) hexokinase activity(GO:0004396) glucose binding(GO:0005536) fructokinase activity(GO:0008865) mannokinase activity(GO:0019158)
0.0	1.7	GO:0042803	protein homodimerization activity(GO:0042803)
0.0	0.1	GO:0016530	metallochaperone activity(GO:0016530)