PRJNA195909:zebrafish embryo and larva development

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
phf21ab Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000021378	PHD finger protein 21Ab
rfx5 Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000063258	regulatory factor X, 5

Gene	Promoter	Pearson corr. coef.	P-value	Plot
rfx5	dr11_v1_chr19_-_7495006_7495006	0.96	2.7e-05	Click!
phf21ab	dr11_v1_chr25_-_7759453_7759525	-0.46	2.1e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr21_-_45920 Show fit	1.20	ENSDART00000040422	bhmt Links NCBI UniProt ZFIN ENSEMBL Google Show fit	betaine-homocysteine methyltransferase
chr10_-_22797959 Show fit	0.93	ENSDART00000183269	pcolcea Links NCBI UniProt ZFIN ENSEMBL Google Show fit	procollagen C-endopeptidase enhancer a
chr2_-_42958619 Show fit	0.66	ENSDART00000144317	oc90 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	otoconin 90
chr5_-_54300725 Show fit	0.57	ENSDART00000163048	slc25a35 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	solute carrier family 25, member 35
chr7_-_26924903 Show fit	0.57	ENSDART00000124363	alx4a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ALX homeobox 4a
chr10_-_43294933 Show fit	0.56	ENSDART00000062631	hapln1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	hyaluronan and proteoglycan link protein 1b
chr19_+_43297546 Show fit	0.52	ENSDART00000168002	laptm5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	lysosomal protein transmembrane 5
chr16_-_13516745 Show fit	0.52	ENSDART00000145410	si:dkeyp-69b9.3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkeyp-69b9.3
chr20_-_29787192 Show fit	0.51	ENSDART00000125348 ENSDART00000048759	id2b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	inhibitor of DNA binding 2b
chr16_+_40301056 Show fit	0.50	ENSDART00000058578	rspo3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	R-spondin 3
chr14_+_6954579 Show fit	0.50	ENSDART00000060998	nme5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	NME/NM23 family member 5
chr23_+_45025909 Show fit	0.41	ENSDART00000188105	hmgb2b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	high mobility group box 2b
chr4_-_75678082 Show fit	0.40	ENSDART00000180201	si:dkey-165o8.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-165o8.1
chr22_+_34710473 Show fit	0.40	ENSDART00000155906	hoga1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	4-hydroxy-2-oxoglutarate aldolase 1
chr10_-_37072776 Show fit	0.39	ENSDART00000110835	myo18aa Links NCBI UniProt ZFIN ENSEMBL Google Show fit	myosin XVIIIAa
chr23_+_45538932 Show fit	0.38	ENSDART00000135602	si:ch73-290k24.6 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch73-290k24.6
chr23_-_45539306 Show fit	0.37	ENSDART00000161913	CU681841.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr1_-_23274393 Show fit	0.36	ENSDART00000147800 ENSDART00000130277 ENSDART00000054340 ENSDART00000054338	rpl9 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ribosomal protein L9
chr8_+_36288261 Show fit	0.35	ENSDART00000191281	CU929676.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr8_-_36412936 Show fit	0.35	ENSDART00000159276	si:zfos-2070c2.3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:zfos-2070c2.3
chr8_-_32878228 Show fit	0.31	ENSDART00000110897	si:dkey-56i24.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-56i24.1
chr22_+_34710036 Show fit	0.30	ENSDART00000025820	hoga1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	4-hydroxy-2-oxoglutarate aldolase 1
chr18_+_8339596 Show fit	0.30	ENSDART00000183323 ENSDART00000185397	BX276107.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr3_-_29941357 Show fit	0.29	ENSDART00000147732 ENSDART00000137973 ENSDART00000103523	grna Links NCBI UniProt ZFIN ENSEMBL Google Show fit	granulin a
chr7_-_26049282 Show fit	0.28	ENSDART00000136389 ENSDART00000101124	rnaseka Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ribonuclease, RNase K a
chr9_-_41077934 Show fit	0.27	ENSDART00000100342	ankar Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ankyrin and armadillo repeat containing
chr1_-_7570181 Show fit	0.27	ENSDART00000103588	mxa Links NCBI UniProt ZFIN ENSEMBL Google Show fit	myxovirus (influenza) resistance A
chr21_-_17290941 Show fit	0.26	ENSDART00000147993	gfi1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	growth factor independent 1B transcription repressor
chr13_-_16066997 Show fit	0.25	ENSDART00000184790	SPATA48 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	spermatogenesis associated 48
chr4_-_330748 Show fit	0.25	ENSDART00000067488	mrps10 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	mitochondrial ribosomal protein S10
chr15_-_17619306 Show fit	0.25	ENSDART00000184011	adamts15b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ADAM metallopeptidase with thrombospondin type 1 motif, 15b
chr18_+_49225552 Show fit	0.25	ENSDART00000135026	si:ch211-136a13.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-136a13.1
chr23_+_21964325 Show fit	0.25	ENSDART00000140208 ENSDART00000135690	lactbl1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	lactamase, beta-like 1a
chr21_+_40239192 Show fit	0.24	ENSDART00000135857	or115-9 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	odorant receptor, family F, subfamily 115, member 9
chr25_+_27873836 Show fit	0.22	ENSDART00000163801	iqub Links NCBI UniProt ZFIN ENSEMBL Google Show fit	IQ motif and ubiquitin domain containing
chr18_+_8340886 Show fit	0.21	ENSDART00000081132	cpt1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	carnitine palmitoyltransferase 1B (muscle)
chr7_+_26049818 Show fit	0.21	ENSDART00000173611	si:dkey-6n21.12 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-6n21.12
chr19_+_27589201 Show fit	0.21	ENSDART00000182060	si:dkeyp-46h3.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkeyp-46h3.1
chr15_+_24388782 Show fit	0.21	ENSDART00000191661 ENSDART00000179995 ENSDART00000111226	sez6b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	seizure related 6 homolog b
chr4_-_76370630 Show fit	0.20	ENSDART00000168831 ENSDART00000174313	si:ch73-158p21.3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch73-158p21.3
chr20_+_3277620 Show fit	0.19	ENSDART00000067397 ENSDART00000135194	ndufaf7 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	NADH dehydrogenase (ubiquinone) complex I, assembly factor 7
chr7_-_56606752 Show fit	0.18	ENSDART00000138714	sult5a1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	sulfotransferase family 5A, member 1
chr25_+_27873671 Show fit	0.17	ENSDART00000088817	iqub Links NCBI UniProt ZFIN ENSEMBL Google Show fit	IQ motif and ubiquitin domain containing
chr13_+_233482 Show fit	0.16	ENSDART00000102511	cfap36 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cilia and flagella associated protein 36
chr19_-_7110617 Show fit	0.15	ENSDART00000104838	psmb8a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	proteasome subunit beta 8A
chr18_+_49411417 Show fit	0.14	ENSDART00000028944	LRFN3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zmp:0000001073
chr20_+_39416729 Show fit	0.14	ENSDART00000099993 ENSDART00000144133	pimr128 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Pim proto-oncogene, serine/threonine kinase, related 128
chr6_-_40352215 Show fit	0.14	ENSDART00000103992	ttll3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	tubulin tyrosine ligase-like family, member 3
chr11_-_24458786 Show fit	0.13	ENSDART00000089713	mxra8a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	matrix-remodelling associated 8a
chr8_-_51635930 Show fit	0.13	ENSDART00000015833	npy8br Links NCBI UniProt ZFIN ENSEMBL Google Show fit	neuropeptide Y receptor Y8b
chr18_-_21640389 Show fit	0.12	ENSDART00000100857	slc38a8a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	solute carrier family 38, member 8a
chr4_-_43613424 Show fit	0.11	ENSDART00000171524	si:dkey-16p6.4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-16p6.4
chr4_-_36033377 Show fit	0.11	ENSDART00000164348 ENSDART00000187058	zgc:174180 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:174180
chr8_+_50727220 Show fit	0.11	ENSDART00000127062	egr3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	early growth response 3
chr17_-_45040813 Show fit	0.11	ENSDART00000075514	entpd5a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ectonucleoside triphosphate diphosphohydrolase 5a
chr14_-_16476863 Show fit	0.11	ENSDART00000089021	canx Links NCBI UniProt ZFIN ENSEMBL Google Show fit	calnexin
chr4_+_68939595 Show fit	0.11	ENSDART00000168331 ENSDART00000193212	si:dkey-264f17.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-264f17.2
chr18_-_46063773 Show fit	0.10	ENSDART00000078561	si:ch73-262h23.4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch73-262h23.4
chr4_+_76440462 Show fit	0.10	ENSDART00000174138	si:dkey-16p6.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-16p6.1
chr4_+_30788743 Show fit	0.10	ENSDART00000184557	si:dkey-178j11.5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-178j11.5
chr2_-_37862380 Show fit	0.10	ENSDART00000186005	si:ch211-284o19.8 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-284o19.8
chr4_-_49982134 Show fit	0.10	ENSDART00000186050	si:dkey-156k2.4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-156k2.4
chr21_-_32097908 Show fit	0.09	ENSDART00000147387	si:ch211-160j14.3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-160j14.3
chr10_-_8434816 Show fit	0.09	ENSDART00000108643	tctn1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	tectonic family member 1
chr11_+_1805421 Show fit	0.09	ENSDART00000173143	lrp1aa Links NCBI UniProt ZFIN ENSEMBL Google Show fit	low density lipoprotein receptor-related protein 1Aa
chr7_+_66822229 Show fit	0.09	ENSDART00000112109	lyve1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	lymphatic vessel endothelial hyaluronic receptor 1a
chr25_+_22719852 Show fit	0.08	ENSDART00000088422	abcc8 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ATP-binding cassette, sub-family C (CFTR/MRP), member 8
chr1_-_494280 Show fit	0.08	ENSDART00000144406	ercc5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	excision repair cross-complementation group 5
chr8_-_36370552 Show fit	0.06	ENSDART00000097932 ENSDART00000148323	si:busm1-104n07.3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:busm1-104n07.3
chr5_+_38662125 Show fit	0.06	ENSDART00000136949	si:dkey-58f10.13 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-58f10.13
chr20_+_39394308 Show fit	0.05	ENSDART00000142554	pimr136 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Pim proto-oncogene, serine/threonine kinase, related 136
chr6_+_26309968 Show fit	0.04	ENSDART00000153805	dzip1l Links NCBI UniProt ZFIN ENSEMBL Google Show fit	DAZ interacting zinc finger protein 1-like
chr23_+_41831224 Show fit	0.04	ENSDART00000171885	scp2b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	sterol carrier protein 2b
chr20_+_39373480 Show fit	0.03	ENSDART00000136714	pimr131 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Pim proto-oncogene, serine/threonine kinase, related 131
chr2_-_49978227 Show fit	0.02	ENSDART00000142835	hecw1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1b
chr18_-_8579907 Show fit	0.02	ENSDART00000147284	FRMD4A Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-220f12.1
chr20_+_43396318 Show fit	0.02	ENSDART00000060910	pimr138 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Pim proto-oncogene, serine/threonine kinase, related 138
chr4_+_7822773 Show fit	0.02	ENSDART00000171391	si:ch1073-67j19.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch1073-67j19.2
chr10_+_36092564 Show fit	0.02	ENSDART00000086490	smyd4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	SET and MYND domain containing 4
chr8_+_36142734 Show fit	0.02	ENSDART00000159361 ENSDART00000161194	mhc2b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	major histocompatibility complex class II integral membrane beta chain gene
chr5_+_58397646 Show fit	0.01	ENSDART00000180759	HEPACAM Links NCBI UniProt ZFIN ENSEMBL Google Show fit	hepatic and glial cell adhesion molecule
chr4_-_36032177 Show fit	0.01	ENSDART00000170143	zgc:174180 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:174180
chr20_+_9211237 Show fit	0.01	ENSDART00000139527	si:ch211-59d15.4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-59d15.4
chr21_+_40268527 Show fit	0.00	ENSDART00000174350	or115-7 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	odorant receptor, family F, subfamily 115, member 7
chr1_+_24366110 Show fit	0.00	ENSDART00000139913	pimr178 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Pim proto-oncogene, serine/threonine kinase, related 178
chr3_-_7912661 Show fit	0.00	ENSDART00000161400	trim35-21 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	tripartite motif containing 35-21
chr7_-_3011514 Show fit	0.00	ENSDART00000169589	zgc:171695 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:171695

View svg image
View png image

Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.2	0.5	GO:1902175	regulation of oxidative stress-induced intrinsic apoptotic signaling pathway(GO:1902175) negative regulation of oxidative stress-induced intrinsic apoptotic signaling pathway(GO:1902176)
0.1	0.5	GO:0060829	negative regulation of canonical Wnt signaling pathway involved in neural plate anterior/posterior pattern formation(GO:0060829)
0.1	0.5	GO:0051145	smooth muscle cell differentiation(GO:0051145)
0.1	0.7	GO:0046487	glyoxylate metabolic process(GO:0046487)
0.1	1.2	GO:0009086	methionine biosynthetic process(GO:0009086)
0.0	0.7	GO:1903963	icosanoid secretion(GO:0032309) arachidonic acid secretion(GO:0050482) arachidonate transport(GO:1903963)
0.0	0.3	GO:0071340	skeletal muscle acetylcholine-gated channel clustering(GO:0071340)
0.0	0.2	GO:0035332	positive regulation of hippo signaling(GO:0035332)
0.0	0.3	GO:0046685	response to arsenic-containing substance(GO:0046685)
0.0	0.1	GO:0006295	nucleotide-excision repair, DNA incision, 3'-to lesion(GO:0006295)
0.0	0.2	GO:0009437	carnitine metabolic process(GO:0009437)
0.0	0.5	GO:0032922	circadian regulation of gene expression(GO:0032922)
0.0	0.1	GO:0072506	phosphate ion homeostasis(GO:0055062) trivalent inorganic anion homeostasis(GO:0072506)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.3	GO:0098844	postsynaptic endocytic zone membrane(GO:0098844)
0.0	0.3	GO:0000314	organellar small ribosomal subunit(GO:0000314) mitochondrial small ribosomal subunit(GO:0005763)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	1.2	GO:0008172	S-methyltransferase activity(GO:0008172)
0.1	0.7	GO:0016833	oxo-acid-lyase activity(GO:0016833)
0.1	0.2	GO:0035243	protein-arginine omega-N symmetric methyltransferase activity(GO:0035243)
0.0	0.1	GO:0070735	protein-glycine ligase activity(GO:0070735) tubulin-glycine ligase activity(GO:0070738)
0.0	0.2	GO:0016416	carnitine O-palmitoyltransferase activity(GO:0004095) O-palmitoyltransferase activity(GO:0016416)
0.0	0.7	GO:0004623	phospholipase A2 activity(GO:0004623)
0.0	0.4	GO:0008301	DNA binding, bending(GO:0008301)
0.0	0.5	GO:0004550	nucleoside diphosphate kinase activity(GO:0004550)
0.0	0.6	GO:0005540	hyaluronic acid binding(GO:0005540)
0.0	0.1	GO:0008281	sulfonylurea receptor activity(GO:0008281)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	1.2	REACTOME SULFUR AMINO ACID METABOLISM	Genes involved in Sulfur amino acid metabolism
0.0	0.2	REACTOME ACTIVATED AMPK STIMULATES FATTY ACID OXIDATION IN MUSCLE	Genes involved in Activated AMPK stimulates fatty-acid oxidation in muscle