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PRJNA195909:zebrafish embryo and larva development

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Results for nr2e1

Z-value: 0.71

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Transcription factors associated with nr2e1

Gene Symbol Gene ID Gene Info
ENSDARG00000017107 nuclear receptor subfamily 2, group E, member 1

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
nr2e1dr11_v1_chr20_-_32446406_324464060.324.0e-01Click!

Activity profile of nr2e1 motif

Sorted Z-values of nr2e1 motif

Promoter Log-likelihood Transcript Gene Gene Info
chr7_+_26029672 0.54 ENSDART00000101126
arachidonate 12-lipoxygenase
chr10_+_10351685 0.49 ENSDART00000109432
cerebral endothelial cell adhesion molecule
chr8_-_50287949 0.38 ENSDART00000023639
NK2 transcription factor related 7
chr5_+_9246018 0.37 ENSDART00000081769
ENSDART00000183189
sushi domain containing 1
chr18_+_31016379 0.35 ENSDART00000172461
ENSDART00000163471
urate (5-hydroxyiso-) hydrolase a
chr2_+_10771787 0.32 ENSDART00000187782
growth factor independent 1A transcription repressor a
chr23_+_44497701 0.30 ENSDART00000149903
si:ch73-375g18.1
chr25_-_32381642 0.28 ENSDART00000133872
ENSDART00000006124
COP9 signalosome subunit 2
chr13_-_15986871 0.27 ENSDART00000189394
IKAROS family zinc finger 1 (Ikaros)
chr12_+_9551667 0.27 ENSDART00000048493
ENSDART00000166178
prolyl 4-hydroxylase, alpha polypeptide I a
chr6_-_49655879 0.26 ENSDART00000191594
adenomatosis polyposis coli down-regulated 1-like
chr21_+_5129513 0.25 ENSDART00000102572
thrombospondin 4b
chr20_+_30725778 0.25 ENSDART00000062532
NHS-like 1b
chr16_+_38360002 0.25 ENSDART00000087346
ENSDART00000148101
zgc:113232
chr14_-_26377044 0.25 ENSDART00000022236
empty spiracles homeobox 3
chr16_+_20915319 0.24 ENSDART00000079383
homeobox A9b
chr7_-_30367650 0.24 ENSDART00000075519
aldehyde dehydrogenase 1 family, member A2
chr2_-_14272083 0.24 ENSDART00000169986
Tctex1 domain containing 1
chr14_-_40389699 0.23 ENSDART00000181581
ENSDART00000173398
protocadherin 19
chr5_-_19861766 0.22 ENSDART00000088904
glycolipid transfer protein a
chr12_+_25945560 0.22 ENSDART00000109799
multimerin 2b
chr1_-_52292235 0.21 ENSDART00000132638
si:dkey-121b10.7
chr2_-_14271874 0.21 ENSDART00000189390
Tctex1 domain containing 1
chr3_-_26017592 0.21 ENSDART00000030890
heme oxygenase 1a
chr3_-_26017831 0.21 ENSDART00000179982
heme oxygenase 1a
chr12_-_26423439 0.21 ENSDART00000113978
synaptopodin 2-like b
chr17_+_5985933 0.20 ENSDART00000190844
zgc:194275
chr20_+_33294428 0.19 ENSDART00000024104
MYCN proto-oncogene, bHLH transcription factor
chr20_+_11731039 0.18 ENSDART00000152215
ENSDART00000152585
si:ch211-155o21.3
chr17_+_28073062 0.18 ENSDART00000182021

chr13_-_35892243 0.17 ENSDART00000002750
ENSDART00000122810
ENSDART00000162399
transforming, acidic coiled-coil containing protein 3
chr13_-_35892051 0.17 ENSDART00000145884
transforming, acidic coiled-coil containing protein 3
chr5_-_48285756 0.17 ENSDART00000183495
myocyte enhancer factor 2cb
chr13_-_12660318 0.17 ENSDART00000008498
alcohol dehydrogenase 8a
chr24_+_35827766 0.16 ENSDART00000144700
si:dkeyp-7a3.1
chr25_-_12515741 0.16 ENSDART00000159487
si:ch211-280a23.2
chr2_-_55861351 0.16 ENSDART00000059003
retinal homeobox gene 2
chr5_+_28848870 0.16 ENSDART00000149563
zgc:174259
chr23_-_16485190 0.15 ENSDART00000155038
si:dkeyp-100a5.4
chr21_-_28901095 0.15 ENSDART00000180820
CXXC finger protein 5a
chr15_-_1822166 0.15 ENSDART00000156883
matrix metallopeptidase 28
chr15_-_1822548 0.14 ENSDART00000082026
ENSDART00000180230
matrix metallopeptidase 28
chr14_+_31865324 0.14 ENSDART00000039880
transmembrane 9 superfamily protein member 5
chr3_-_36606884 0.14 ENSDART00000172003
si:dkeyp-72e1.6
chr12_+_18533198 0.14 ENSDART00000189729
meiosis specific with OB domains
chr14_+_44774089 0.14 ENSDART00000098643
translocase of outer mitochondrial membrane 5 homolog (yeast)
chr5_+_38886499 0.13 ENSDART00000076845
Fraser extracellular matrix complex subunit 1
chr22_-_22301929 0.12 ENSDART00000142027
chromatin assembly factor 1, subunit A (p150)
chr15_+_34675660 0.12 ENSDART00000009127
lymphotoxin alpha (TNF superfamily, member 1)
chr14_+_31865099 0.12 ENSDART00000189124
transmembrane 9 superfamily protein member 5
chr2_+_33926606 0.12 ENSDART00000111430
kinesin family member 2C
chr23_-_16484383 0.12 ENSDART00000187839
si:dkeyp-100a5.4
chr12_-_23128746 0.11 ENSDART00000170018
armadillo repeat containing 4
chr8_+_4838114 0.11 ENSDART00000146667
es1 protein
chr17_+_12408188 0.11 ENSDART00000105218
ketohexokinase
chr15_-_4485828 0.11 ENSDART00000062868
transcription factor Dp-2
chr17_+_50127648 0.10 ENSDART00000156460
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 16
chr2_+_18988407 0.10 ENSDART00000170216
glutamate-ammonia ligase (glutamine synthase) a
chr16_-_26855936 0.10 ENSDART00000167320
ENSDART00000078119
INO80 complex subunit C
chr19_-_38539670 0.10 ENSDART00000136775
collagen, type XVI, alpha 1
chr9_+_3388099 0.10 ENSDART00000019910
distal-less homeobox 1a
chr15_-_33834577 0.09 ENSDART00000163354
matrix metallopeptidase 13b
chr25_-_15507523 0.09 ENSDART00000134166
si:dkeyp-67e1.3
chr4_+_69577362 0.09 ENSDART00000160913
zinc finger protein 1030
chr7_+_57108823 0.09 ENSDART00000184943
ENSDART00000055956
enolase superfamily member 1
chr4_+_43392655 0.09 ENSDART00000150797
zinc finger protein 1073
chr23_+_28718863 0.09 ENSDART00000078156
spermidine synthase
chr20_+_30578163 0.09 ENSDART00000159485
FGFR1 oncogene partner
chr4_+_59748607 0.09 ENSDART00000108499
zinc finger protein 1068
chr7_-_38689562 0.09 ENSDART00000167209
apelin receptor 2
chr22_-_22301672 0.09 ENSDART00000111711
chromatin assembly factor 1, subunit A (p150)
chr7_-_26571994 0.08 ENSDART00000128801
si:dkey-62k3.6
chr21_+_25802190 0.08 ENSDART00000128987
neurofibromin 2b (merlin)
chr16_-_35392926 0.08 ENSDART00000164482
si:dkey-34d22.3
chr2_-_30249746 0.08 ENSDART00000124153
ENSDART00000142575
elongin C paralog b
chr9_-_31135901 0.08 ENSDART00000113027
ENSDART00000193210
ENSDART00000128896
si:ch211-184m13.4
chr20_+_47196506 0.07 ENSDART00000153040
zinc finger protein 975
chr25_-_16724913 0.07 ENSDART00000157075
polypeptide N-acetylgalactosaminyltransferase 8a, tandem duplicate 2
chr23_+_2669 0.07 ENSDART00000011146
twist3
chr1_+_44003654 0.07 ENSDART00000131337
si:dkey-22i16.10
chr17_-_12408109 0.07 ENSDART00000155509
ankyrin repeat and EF-hand domain containing 1b
chr4_-_59159690 0.07 ENSDART00000164706
zinc finger protein 1149
chr6_-_21534301 0.07 ENSDART00000126186
proteasome 26S subunit, non-ATPase 12
chr18_-_41232297 0.07 ENSDART00000036928
F-box protein 36a
chr15_+_37545855 0.07 ENSDART00000099456
presenilin enhancer gamma secretase subunit
chr13_+_4888351 0.07 ENSDART00000145940
mitochondrial calcium uptake 1
chr10_-_1625080 0.07 ENSDART00000137285
nucleoporin 155
chr10_+_7593185 0.07 ENSDART00000162617
ENSDART00000162590
ENSDART00000171744
protein phosphatase 2, catalytic subunit, beta isozyme
chr6_-_29007493 0.06 ENSDART00000065139
growth factor independent 1A transcription repressor b
chr18_-_5542351 0.06 ENSDART00000129459
spermatogenesis associated 5-like 1
chr21_-_25801956 0.06 ENSDART00000101219
methyltransferase like 27
chr21_+_37411547 0.06 ENSDART00000076320
mitochondrial ribosomal protein S17
chr2_+_21486529 0.06 ENSDART00000047468
inhibin, beta Ab
chr13_+_24671481 0.06 ENSDART00000001678
ADAM metallopeptidase domain 8a
chr19_+_28284120 0.06 ENSDART00000103862
mitochondrial ribosomal protein L36
chr12_+_7865470 0.06 ENSDART00000161683

chr4_+_76926059 0.06 ENSDART00000136192
si:dkey-240n22.6
chr4_-_71983381 0.06 ENSDART00000169130
finTRIM family, member 64
chr7_+_39416336 0.06 ENSDART00000171783

chr4_-_77125693 0.06 ENSDART00000174256

chr4_+_39055027 0.06 ENSDART00000150397
zinc finger protein 977
chr22_+_13977772 0.06 ENSDART00000080313
ADP-ribosylation factor-like 4Ca
chr16_+_10429770 0.06 ENSDART00000173132
valyl-tRNA synthetase
chr1_-_46244523 0.06 ENSDART00000143908
si:ch211-138g9.3
chr7_-_59047720 0.06 ENSDART00000184831

chr16_-_39178979 0.06 ENSDART00000158894
si:dkey-99n20.6
chr4_-_43071336 0.05 ENSDART00000150773
zinc finger protein 1072
chr17_+_12408405 0.05 ENSDART00000154827
ENSDART00000048440
ENSDART00000156429
ketohexokinase
chr21_+_19834072 0.05 ENSDART00000147555
coiled-coil domain containing 80 like 2
chr15_+_37546391 0.05 ENSDART00000186625
presenilin enhancer gamma secretase subunit
chr14_-_28534563 0.05 ENSDART00000054088
zgc:113364
chr22_+_28969071 0.05 ENSDART00000163427
Pim proto-oncogene, serine/threonine kinase, related 95
chr5_-_50781623 0.05 ENSDART00000114950
zgc:194908
chr14_-_45604667 0.05 ENSDART00000167016
si:ch211-276i12.9
chr4_+_54618332 0.04 ENSDART00000171824
si:ch211-227e10.2
chr4_-_39942347 0.04 ENSDART00000124410
zinc finger protein 979
chr10_-_35177257 0.04 ENSDART00000077426
POM121 transmembrane nucleoporin
chr5_-_38197080 0.04 ENSDART00000140708
si:ch211-284e13.9
chr25_-_16742636 0.04 ENSDART00000192486
ENSDART00000192711
polypeptide N-acetylgalactosaminyltransferase 8a, tandem duplicate 1
chr1_+_57311901 0.04 ENSDART00000149397
mycbp associated protein
chr4_+_35227135 0.04 ENSDART00000161023
ENSDART00000182403
si:ch211-276i6.1
chr25_-_16742438 0.04 ENSDART00000156091
polypeptide N-acetylgalactosaminyltransferase 8a, tandem duplicate 1
chr13_-_6279684 0.04 ENSDART00000092105
1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)
chr6_+_27275716 0.04 ENSDART00000156434
ENSDART00000114347
selenocysteine lyase
chr7_-_3693536 0.04 ENSDART00000126381
si:ch211-282j17.13
chr16_+_33111947 0.04 ENSDART00000058473
cannabinoid receptor 2
chr19_-_3886991 0.04 ENSDART00000162085
thyroid hormone receptor associated protein 3b
chr15_-_39948635 0.04 ENSDART00000114836
mutS homolog 5
chr1_+_41466011 0.04 ENSDART00000135280
poly(A) binding protein interacting protein 2B
chr7_-_3669868 0.03 ENSDART00000172907
si:ch211-282j17.12
chr4_+_5196469 0.03 ENSDART00000067386
RAD51 associated protein 1
chr24_+_26895748 0.03 ENSDART00000089351
neutral cholesterol ester hydrolase 1b, tandem duplicate 1
chr4_-_64542903 0.03 ENSDART00000143176

chr17_+_29345606 0.03 ENSDART00000086164
potassium channel tetramerization domain containing 3
chr1_+_44336897 0.03 ENSDART00000157578
si:ch211-165a10.1
chr1_-_9130136 0.03 ENSDART00000113013
partner and localizer of BRCA2
chr10_+_8554929 0.03 ENSDART00000190849
TBC1 domain family, member 10Ab
chr23_-_333457 0.03 ENSDART00000114486
UHRF1 binding protein 1
chr4_-_37708661 0.03 ENSDART00000168788
zinc finger protein 1139
chr20_-_25877793 0.03 ENSDART00000177333
ENSDART00000184619
exocyst complex component 1
chr16_+_28932038 0.03 ENSDART00000149480
natriuretic peptide receptor 1b
chr25_-_16160494 0.03 ENSDART00000146880
si:dkey-80c24.4
chr19_+_29798064 0.03 ENSDART00000167803
ENSDART00000051804
MARCKS-like 1b
chr8_+_30619919 0.02 ENSDART00000014046
sperm antigen with calponin homology and coiled-coil domains 1-like a
chr7_-_3693303 0.02 ENSDART00000166949
si:ch211-282j17.13
chr12_+_7491690 0.02 ENSDART00000152564
phytanoyl-CoA 2-hydroxylase interacting protein-like b
chr18_-_18662577 0.02 ENSDART00000076695
alanyl-tRNA synthetase
chr20_+_27020201 0.02 ENSDART00000126919
ENSDART00000016014
chromogranin A
chr4_-_77120928 0.02 ENSDART00000174154

chr17_-_48743076 0.02 ENSDART00000173117
potassium channel, subfamily K, member 17
chr5_+_43782267 0.02 ENSDART00000130355
nitric oxide synthase 2a, inducible
chr18_+_13236255 0.02 ENSDART00000091560
TBC/LysM-associated domain containing 1
chr14_-_17575764 0.02 ENSDART00000123145
ring finger protein 4
chr22_-_6054749 0.02 ENSDART00000191603

chr25_-_13202208 0.02 ENSDART00000168155
si:ch211-194m7.4
chr4_+_71735828 0.02 ENSDART00000174867
zinc finger protein 1116
chr4_+_60381608 0.02 ENSDART00000167351
zinc finger protein 1130
chr6_-_52723901 0.01 ENSDART00000033949
oxidative stress responsive serine-rich 1
chr22_+_1837448 0.01 ENSDART00000160015
zinc finger protein 1183
chr22_-_24880824 0.01 ENSDART00000061165
vitellogenin 2
chr22_+_22302614 0.01 ENSDART00000049434
secretory carrier membrane protein 4
chr6_+_46406565 0.01 ENSDART00000168440
ENSDART00000131203
ENSDART00000138567
ENSDART00000132845
polybromo 1, like
chr1_+_41465771 0.01 ENSDART00000010211
poly(A) binding protein interacting protein 2B
chr19_-_10286228 0.01 ENSDART00000027316
CCR4-NOT transcription complex, subunit 3b
chr9_+_27876146 0.01 ENSDART00000133997
armadillo repeat containing 8
chr4_+_29703166 0.01 ENSDART00000132876
si:ch211-214c20.1
chr19_+_6914095 0.01 ENSDART00000104906
si:ch73-367f21.4
chr20_-_1176631 0.01 ENSDART00000152255
gamma-aminobutyric acid (GABA) A receptor, rho 2b
chr19_-_46775562 0.01 ENSDART00000187144
actin binding Rho activating protein b
chr6_-_43283122 0.01 ENSDART00000186022
FERM domain containing 4Ba
chr4_-_64482414 0.01 ENSDART00000159000
zinc finger protein 1105
chr6_+_46668717 0.01 ENSDART00000064853
oxytocin receptor like
chr5_-_45877387 0.01 ENSDART00000183714
ENSDART00000041503
solute carrier family 4 (sodium bicarbonate cotransporter), member 4a
chr6_-_7769178 0.01 ENSDART00000191701
ENSDART00000149823
myosin, heavy chain 9a, non-muscle
chr1_+_58608978 0.01 ENSDART00000152744
si:ch73-236c18.9
chr1_+_14073891 0.00 ENSDART00000021693
ankyrin 2a, neuronal
chr17_+_14784275 0.00 ENSDART00000005355
RNA transcription, translation and transport factor
chr2_+_17524278 0.00 ENSDART00000165633
Pim proto-oncogene, serine/threonine kinase, related 196
chr3_-_62393449 0.00 ENSDART00000101870
ENSDART00000140782
ENSDART00000181704
protein Z, vitamin K-dependent plasma glycoprotein a
chr13_-_37465524 0.00 ENSDART00000100324
ENSDART00000147336
protein phosphatase 2, regulatory subunit B', epsilon isoform b
chr7_+_4648398 0.00 ENSDART00000148099
si:dkey-83f18.3
chr2_-_29923630 0.00 ENSDART00000158844
ENSDART00000031130
PAX interacting (with transcription-activation domain) protein 1
chr22_+_2409175 0.00 ENSDART00000141776
zgc:113220
chr6_-_37744430 0.00 ENSDART00000150177
ENSDART00000149722
non imprinted in Prader-Willi/Angelman syndrome 2 (human)
chr21_-_22547496 0.00 ENSDART00000166835
ENSDART00000089030
myosin VB
chr11_-_18601955 0.00 ENSDART00000180565
zinc finger, MYND-type containing 8
chr25_-_31433512 0.00 ENSDART00000067028
zgc:172145
chr23_-_790620 0.00 ENSDART00000166818

Network of associatons between targets according to the STRING database.

First level regulatory network of nr2e1

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0043576 respiratory gaseous exchange(GO:0007585) regulation of respiratory gaseous exchange(GO:0043576)
0.1 0.3 GO:0019628 urate catabolic process(GO:0019628) urate metabolic process(GO:0046415)
0.1 0.3 GO:0000338 protein deneddylation(GO:0000338)
0.1 0.2 GO:0061113 pancreas morphogenesis(GO:0061113)
0.1 0.2 GO:0009750 response to fructose(GO:0009750)
0.0 0.5 GO:0019372 lipoxygenase pathway(GO:0019372) linoleic acid metabolic process(GO:0043651) hepoxilin metabolic process(GO:0051121) hepoxilin biosynthetic process(GO:0051122)
0.0 0.2 GO:0035989 tendon development(GO:0035989)
0.0 0.4 GO:0003207 cardiac chamber formation(GO:0003207)
0.0 0.2 GO:0009954 proximal/distal pattern formation(GO:0009954)
0.0 0.2 GO:0046294 formaldehyde metabolic process(GO:0046292) formaldehyde catabolic process(GO:0046294)
0.0 0.1 GO:0036228 protein targeting to nuclear inner membrane(GO:0036228) protein localization to nuclear envelope(GO:0090435)
0.0 0.1 GO:0051044 positive regulation of membrane protein ectodomain proteolysis(GO:0051044)
0.0 0.1 GO:0070584 mitochondrion morphogenesis(GO:0070584)
0.0 0.1 GO:0035881 amacrine cell differentiation(GO:0035881)
0.0 0.3 GO:0033077 T cell differentiation in thymus(GO:0033077) thymocyte aggregation(GO:0071594)
0.0 0.1 GO:0006542 glutamine biosynthetic process(GO:0006542)
0.0 0.3 GO:0018401 peptidyl-proline hydroxylation to 4-hydroxy-L-proline(GO:0018401) 4-hydroxyproline metabolic process(GO:0019471)
0.0 0.1 GO:0034205 Notch receptor processing(GO:0007220) beta-amyloid formation(GO:0034205) amyloid precursor protein catabolic process(GO:0042987)
0.0 0.2 GO:0097475 motor neuron migration(GO:0097475)
0.0 0.4 GO:0030574 collagen catabolic process(GO:0030574) multicellular organism catabolic process(GO:0044243)
0.0 0.1 GO:0051561 positive regulation of mitochondrial calcium ion concentration(GO:0051561)
0.0 0.1 GO:0043330 response to exogenous dsRNA(GO:0043330)
0.0 0.1 GO:0008216 spermidine metabolic process(GO:0008216)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0033186 CAF-1 complex(GO:0033186)
0.0 0.3 GO:0008180 COP9 signalosome(GO:0008180)
0.0 0.1 GO:0071065 alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex(GO:0071065)
0.0 0.1 GO:0044611 nuclear pore inner ring(GO:0044611)
0.0 0.1 GO:0070765 gamma-secretase complex(GO:0070765)
0.0 0.1 GO:0005742 mitochondrial outer membrane translocase complex(GO:0005742)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.5 GO:0050211 procollagen galactosyltransferase activity(GO:0050211)
0.1 0.4 GO:0004392 heme oxygenase (decyclizing) activity(GO:0004392)
0.1 0.3 GO:0019784 NEDD8-specific protease activity(GO:0019784)
0.0 0.1 GO:0008310 single-stranded DNA 3'-5' exodeoxyribonuclease activity(GO:0008310)
0.0 0.2 GO:0004024 alcohol dehydrogenase activity, zinc-dependent(GO:0004024) S-(hydroxymethyl)glutathione dehydrogenase activity(GO:0051903)
0.0 0.1 GO:0004653 polypeptide N-acetylgalactosaminyltransferase activity(GO:0004653)
0.0 0.2 GO:0008467 [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity(GO:0008467)
0.0 0.3 GO:0004656 procollagen-proline 4-dioxygenase activity(GO:0004656)
0.0 0.2 GO:0004029 aldehyde dehydrogenase (NAD) activity(GO:0004029)
0.0 0.1 GO:0060182 apelin receptor activity(GO:0060182)
0.0 0.1 GO:0016211 glutamate-ammonia ligase activity(GO:0004356) ammonia ligase activity(GO:0016211) acid-ammonia (or amide) ligase activity(GO:0016880)
0.0 0.1 GO:0008327 methyl-CpG binding(GO:0008327)
0.0 0.4 GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen(GO:0016702)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 PID AURORA A PATHWAY Aurora A signaling
0.0 0.3 PID NFAT TFPATHWAY Calcineurin-regulated NFAT-dependent transcription in lymphocytes

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 REACTOME SIGNALING BY NOTCH4 Genes involved in Signaling by NOTCH4