PRJNA195909:zebrafish embryo and larva development

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
noto Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000021201	notochord homeobox
vax1 Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000021916	ventral anterior homeobox 1
vax1 Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000114230	ventral anterior homeobox 1

Gene	Promoter	Pearson corr. coef.	P-value	Plot
noto	dr11_v1_chr13_+_14976108_14976108	-0.68	4.3e-02	Click!
vax1	dr11_v1_chr17_-_21441464_21441464	0.07	8.6e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr12_+_47446158 Show fit	0.65	ENSDART00000152857	fmn2b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	formin 2b
chr5_+_20257225 Show fit	0.64	ENSDART00000127919	ssh1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	slingshot protein phosphatase 1a
chr13_-_35808904 Show fit	0.63	ENSDART00000171667	map3k4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	mitogen-activated protein kinase kinase kinase 4
chr19_-_18313303 Show fit	0.61	ENSDART00000164644 ENSDART00000167480 ENSDART00000163104	si:dkey-208k4.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-208k4.2
chr2_+_50608099 Show fit	0.59	ENSDART00000185805 ENSDART00000111135	neurod6b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	neuronal differentiation 6b
chr19_+_41464870 Show fit	0.47	ENSDART00000102778	dlx6a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	distal-less homeobox 6a
chr14_+_51056605 Show fit	0.46	ENSDART00000159639	CABZ01078593.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr5_-_15283509 Show fit	0.46	ENSDART00000052712	gnb1l Links NCBI UniProt ZFIN ENSEMBL Google Show fit	guanine nucleotide binding protein (G protein), beta polypeptide 1-like
chr9_-_14683574 Show fit	0.45	ENSDART00000144022	pard3bb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	par-3 family cell polarity regulator beta b
chr8_-_22274222 Show fit	0.45	ENSDART00000131805	nphp4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	nephronophthisis 4
chr22_-_21897203 Show fit	0.43	ENSDART00000158501 ENSDART00000105566 ENSDART00000136795	gna11a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	guanine nucleotide binding protein (G protein), alpha 11a (Gq class)
chr2_-_38284648 Show fit	0.42	ENSDART00000148281 ENSDART00000132621	si:ch211-14a17.7 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-14a17.7
chr20_-_18382708 Show fit	0.39	ENSDART00000170864 ENSDART00000166762 ENSDART00000191333	vipas39 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog
chr6_+_32382743 Show fit	0.37	ENSDART00000190009	dock7 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	dedicator of cytokinesis 7
chr19_+_32401278 Show fit	0.35	ENSDART00000184353	atxn1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ataxin 1a
chr16_-_22544047 Show fit	0.34	ENSDART00000131657	cgna Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cingulin a
chr16_-_7828838 Show fit	0.31	ENSDART00000191434 ENSDART00000108653	tcaim Links NCBI UniProt ZFIN ENSEMBL Google Show fit	T cell activation inhibitor, mitochondrial
chr25_+_2361721 Show fit	0.30	ENSDART00000172905	zmp:0000000932 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zmp:0000000932
chr11_-_13107106 Show fit	0.29	ENSDART00000184477	elovl1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ELOVL fatty acid elongase 1b
chr6_+_40354424 Show fit	0.29	ENSDART00000047416	slc4a8 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	solute carrier family 4, sodium bicarbonate cotransporter, member 8
chr18_+_5137241 Show fit	0.28	ENSDART00000159601	serpini1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	serpin peptidase inhibitor, clade I (neuroserpin), member 1
chr20_-_1635922 Show fit	0.28	ENSDART00000181502	CR846082.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr18_-_43884044 Show fit	0.27	ENSDART00000087382	ddx6 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	DEAD (Asp-Glu-Ala-Asp) box helicase 6
chr19_-_20430892 Show fit	0.27	ENSDART00000111409	tbc1d5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	TBC1 domain family, member 5
chr15_+_31701716 Show fit	0.27	ENSDART00000113370	b3glcta Links NCBI UniProt ZFIN ENSEMBL Google Show fit	beta 3-glucosyltransferase a
chr7_-_12464412 Show fit	0.26	ENSDART00000178723	adamtsl3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ADAMTS-like 3
chr17_-_3815693 Show fit	0.26	ENSDART00000161207	PLCB4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	phospholipase C beta 4
chr10_+_28160265 Show fit	0.25	ENSDART00000022484	rnft1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ring finger protein, transmembrane 1
chr10_-_2524917 Show fit	0.24	ENSDART00000188642	CU856539.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr19_+_2631565 Show fit	0.24	ENSDART00000171487	fam126a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	family with sequence similarity 126, member A
chr6_-_57539141 Show fit	0.24	ENSDART00000156967	itcha Links NCBI UniProt ZFIN ENSEMBL Google Show fit	itchy E3 ubiquitin protein ligase a
chr12_+_48803098 Show fit	0.23	ENSDART00000074768	ppifb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	peptidylprolyl isomerase Fb
chr21_+_8427059 Show fit	0.23	ENSDART00000143151	dennd1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	DENN/MADD domain containing 1A
chr12_+_34891529 Show fit	0.23	ENSDART00000015643	tbcc Links NCBI UniProt ZFIN ENSEMBL Google Show fit	tubulin folding cofactor C
chr8_-_25034411 Show fit	0.22	ENSDART00000135973	nfyal Links NCBI UniProt ZFIN ENSEMBL Google Show fit	nuclear transcription factor Y, alpha, like
chr8_-_52562672 Show fit	0.21	ENSDART00000159333 ENSDART00000159974	si:ch73-199g24.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch73-199g24.2
chr4_+_9011448 Show fit	0.21	ENSDART00000192357	samm50l Links NCBI UniProt ZFIN ENSEMBL Google Show fit	sorting and assembly machinery component 50 homolog, like
chr8_-_39822917 Show fit	0.20	ENSDART00000067843	zgc:162025 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:162025
chr6_-_19271210 Show fit	0.20	ENSDART00000163628 ENSDART00000159124	zgc:174863 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:174863
chr2_-_43123949 Show fit	0.20	ENSDART00000075347 ENSDART00000132346	lrrc6 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	leucine rich repeat containing 6
chr11_+_11303458 Show fit	0.19	ENSDART00000162486 ENSDART00000160703	si:dkey-23f9.4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-23f9.4
chr2_-_39558643 Show fit	0.19	ENSDART00000139860 ENSDART00000145231 ENSDART00000141721	cbln7 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cerebellin 7
chr2_-_2957970 Show fit	0.19	ENSDART00000162505	si:ch1073-82l19.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch1073-82l19.1
chr4_+_21129752 Show fit	0.18	ENSDART00000169764	syt1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	synaptotagmin Ia
chr15_+_44366556 Show fit	0.17	ENSDART00000133449	GUCY1A2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	guanylate cyclase 1 soluble subunit alpha 2
chr13_-_24257631 Show fit	0.15	ENSDART00000146524	urb2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	URB2 ribosome biogenesis 2 homolog (S. cerevisiae)
chr17_+_21902058 Show fit	0.15	ENSDART00000142178	plekha1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1a
chr1_+_513986 Show fit	0.15	ENSDART00000109083 ENSDART00000081945	txnl4b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	thioredoxin-like 4B
chr2_-_26720854 Show fit	0.14	ENSDART00000148110	si:dkey-181m9.8 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-181m9.8
chr6_-_30954268 Show fit	0.13	ENSDART00000154523	pde4ba Links NCBI UniProt ZFIN ENSEMBL Google Show fit	phosphodiesterase 4B, cAMP-specific a
chr5_+_41477954 Show fit	0.11	ENSDART00000185871	pias2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	protein inhibitor of activated STAT, 2
chr12_+_22580579 Show fit	0.11	ENSDART00000171725 ENSDART00000192290	capgb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	capping protein (actin filament), gelsolin-like b
chr9_-_54248182 Show fit	0.11	ENSDART00000129540	larsa Links NCBI UniProt ZFIN ENSEMBL Google Show fit	leucyl-tRNA synthetase a
chr10_-_33621739 Show fit	0.11	ENSDART00000142655 ENSDART00000128049	hunk Links NCBI UniProt ZFIN ENSEMBL Google Show fit	hormonally up-regulated Neu-associated kinase
chr18_-_2727764 Show fit	0.11	ENSDART00000160841	ARHGEF17 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-248g20.5
chr6_-_40922971 Show fit	0.10	ENSDART00000155363	sfi1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	SFI1 centrin binding protein
chr16_+_43765993 Show fit	0.10	ENSDART00000149154	si:dkey-122a22.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-122a22.2
chr14_+_22591624 Show fit	0.09	ENSDART00000108987	gfra4b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	GDNF family receptor alpha 4b
chr3_-_32902138 Show fit	0.08	ENSDART00000144026 ENSDART00000083874 ENSDART00000145443 ENSDART00000148239 ENSDART00000134917	kat7a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	K(lysine) acetyltransferase 7a
chr10_+_16036246 Show fit	0.08	ENSDART00000141586 ENSDART00000135868 ENSDART00000065037 ENSDART00000124502	lmnb1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	lamin B1
chr20_+_29209767 Show fit	0.08	ENSDART00000141252	katnbl1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	katanin p80 subunit B-like 1
chr14_+_30762131 Show fit	0.08	ENSDART00000145039	si:ch211-145o7.3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-145o7.3
chr19_+_9295244 Show fit	0.07	ENSDART00000132255 ENSDART00000144299	si:ch73-15n24.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch73-15n24.1
chr20_-_37813863 Show fit	0.07	ENSDART00000147529	batf3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	basic leucine zipper transcription factor, ATF-like 3
chr6_+_3280939 Show fit	0.07	ENSDART00000151359	kdm4aa Links NCBI UniProt ZFIN ENSEMBL Google Show fit	lysine (K)-specific demethylase 4A, genome duplicate a
chr23_-_1348933 Show fit	0.07	ENSDART00000168981	CABZ01078120.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr7_-_46777876 Show fit	0.06	ENSDART00000193954	tshz3b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	teashirt zinc finger homeobox 3b
chr5_+_41477526 Show fit	0.06	ENSDART00000153567	pias2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	protein inhibitor of activated STAT, 2
chr16_-_13818061 Show fit	0.06	ENSDART00000132982 ENSDART00000144856	leng9 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	leukocyte receptor cluster (LRC) member 9
chr22_-_2959005 Show fit	0.05	ENSDART00000040701	ing5a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	inhibitor of growth family, member 5a
chr17_+_16046314 Show fit	0.05	ENSDART00000154554 ENSDART00000154338 ENSDART00000155336	si:ch73-204p21.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch73-204p21.2
chr18_+_9362455 Show fit	0.05	ENSDART00000187025	sema3ab Links NCBI UniProt ZFIN ENSEMBL Google Show fit	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ab
chr1_-_31534089 Show fit	0.05	ENSDART00000007770	lbx1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ladybird homeobox 1b
chr10_-_26744131 Show fit	0.05	ENSDART00000020096 ENSDART00000162710 ENSDART00000179853	fgf13b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	fibroblast growth factor 13b
chr13_+_15190677 Show fit	0.05	ENSDART00000142240 ENSDART00000129045	mavs Links NCBI UniProt ZFIN ENSEMBL Google Show fit	mitochondrial antiviral signaling protein
chr7_+_65261576 Show fit	0.04	ENSDART00000169566	bco1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	beta-carotene oxygenase 1
chr18_+_17827149 Show fit	0.04	ENSDART00000190237 ENSDART00000189345	ZNF423 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-216l23.1
chr24_+_19415124 Show fit	0.03	ENSDART00000186931	sulf1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	sulfatase 1
chr6_-_40581376 Show fit	0.03	ENSDART00000185412	tspo Links NCBI UniProt ZFIN ENSEMBL Google Show fit	translocator protein
chr2_-_21819421 Show fit	0.03	ENSDART00000121586	chd7 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	chromodomain helicase DNA binding protein 7
chr15_+_31899312 Show fit	0.03	ENSDART00000155315	frya Links NCBI UniProt ZFIN ENSEMBL Google Show fit	furry homolog a (Drosophila)
chr1_-_7970653 Show fit	0.03	ENSDART00000188909	si:dkey-79f11.7 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-79f11.7
chr25_+_36338289 Show fit	0.03	ENSDART00000187881	zgc:165555 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:165555
chr21_-_42876565 Show fit	0.02	ENSDART00000126480	zmp:0000001268 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zmp:0000001268
chr16_+_45425181 Show fit	0.02	ENSDART00000168591	phf1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	PHD finger protein 1
chr8_+_25034544 Show fit	0.01	ENSDART00000123300	ngrn Links NCBI UniProt ZFIN ENSEMBL Google Show fit	neugrin, neurite outgrowth associated
chr1_-_51719110 Show fit	0.01	ENSDART00000190574	rnaseh2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ribonuclease H2, subunit A
chr3_-_27601812 Show fit	0.01	ENSDART00000077734	zgc:66160 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:66160
chr13_+_8677166 Show fit	0.01	ENSDART00000181016 ENSDART00000135028	prop1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	PROP paired-like homeobox 1
chr14_-_36320506 Show fit	0.01	ENSDART00000074639	egf Links NCBI UniProt ZFIN ENSEMBL Google Show fit	epidermal growth factor

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.4	GO:0051660	establishment of centrosome localization(GO:0051660)
0.1	0.4	GO:2000096	positive regulation of Wnt signaling pathway, planar cell polarity pathway(GO:2000096)
0.1	0.2	GO:0045040	outer mitochondrial membrane organization(GO:0007008) protein import into mitochondrial outer membrane(GO:0045040)
0.1	0.3	GO:1904292	regulation of ERAD pathway(GO:1904292)
0.0	0.3	GO:0034063	stress granule assembly(GO:0034063)
0.0	0.2	GO:0097065	anterior head development(GO:0097065)
0.0	0.4	GO:0035803	binding of sperm to zona pellucida(GO:0007339) egg coat formation(GO:0035803) regulation of acrosome reaction(GO:0060046) positive regulation of acrosome reaction(GO:2000344)
0.0	0.2	GO:0070301	cellular response to hydrogen peroxide(GO:0070301)
0.0	0.2	GO:0007023	post-chaperonin tubulin folding pathway(GO:0007023)
0.0	0.5	GO:0035141	medial fin morphogenesis(GO:0035141)
0.0	0.3	GO:0034626	fatty acid elongation, saturated fatty acid(GO:0019367) fatty acid elongation, unsaturated fatty acid(GO:0019368) fatty acid elongation, monounsaturated fatty acid(GO:0034625) fatty acid elongation, polyunsaturated fatty acid(GO:0034626)
0.0	0.3	GO:0015701	bicarbonate transport(GO:0015701)
0.0	0.2	GO:0060158	phospholipase C-activating dopamine receptor signaling pathway(GO:0060158)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.2	GO:0042584	chromaffin granule membrane(GO:0042584)
0.0	0.2	GO:0001401	mitochondrial sorting and assembly machinery complex(GO:0001401)
0.0	0.4	GO:0097546	ciliary base(GO:0097546)
0.0	0.1	GO:0071797	LUBAC complex(GO:0071797)
0.0	0.2	GO:0016602	CCAAT-binding factor complex(GO:0016602)
0.0	0.2	GO:0031462	Cul2-RING ubiquitin ligase complex(GO:0031462)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.4	GO:0031826	type 2A serotonin receptor binding(GO:0031826)
0.0	0.4	GO:0032190	acrosin binding(GO:0032190)
0.0	0.3	GO:0008510	sodium:bicarbonate symporter activity(GO:0008510)
0.0	0.2	GO:0016018	cyclosporin A binding(GO:0016018)
0.0	0.3	GO:0102338	fatty acid elongase activity(GO:0009922) 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338)
0.0	0.2	GO:0061665	SUMO ligase activity(GO:0061665)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.6	PID P38 MKK3 6PATHWAY	p38 MAPK signaling pathway
0.0	0.2	PID IL12 STAT4 PATHWAY	IL12 signaling mediated by STAT4

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.4	REACTOME SIGNALING BY HIPPO	Genes involved in Signaling by Hippo
0.0	0.3	REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE	Genes involved in mRNA Decay by 5' to 3' Exoribonuclease
0.0	0.2	REACTOME POST CHAPERONIN TUBULIN FOLDING PATHWAY	Genes involved in Post-chaperonin tubulin folding pathway