Project
PRJNA195909:zebrafish embryo and larva development
Navigation
Downloads
Results for nfia
Z-value: 2.43
Motif logo
Transcription factors associated with nfia
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| nfia | dr11_v1_chr22_-_16997887_16997887 | 0.68 | 4.6e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr3_-_55139127 Show fit | 6.12 |
ENSDART00000115324
|
hemoglobin, alpha embryonic 1.3 |
|
| chr25_+_20089986 Show fit | 4.09 |
ENSDART00000143441
ENSDART00000184073 |
troponin I4b, tandem duplicate 2 |
|
| chr12_-_17712393 Show fit | 3.80 |
ENSDART00000143534
ENSDART00000010144 |
parvalbumin 2 |
|
| chr5_-_32292965 Show fit | 3.78 |
ENSDART00000183522
ENSDART00000131983 |
myosin, heavy polypeptide 1.2, skeletal muscle |
|
| chr3_+_23221047 Show fit | 3.78 |
ENSDART00000009393
|
collagen, type I, alpha 1a |
|
| chr21_+_26390549 Show fit | 3.55 |
ENSDART00000185643
|
thymosin, beta |
|
| chr12_+_42436328 Show fit | 3.51 |
ENSDART00000167324
|
early B cell factor 3a |
|
| chr13_+_30804367 Show fit | 3.38 |
ENSDART00000053946
|
chemokine (C-X-C motif) ligand 12a (stromal cell-derived factor 1) |
|
| chr16_-_55028740 Show fit | 3.35 |
ENSDART00000156368
ENSDART00000161704 |
zgc:114181 |
|
| chr9_-_22182396 Show fit | 3.08 |
ENSDART00000101809
|
crystallin, gamma M2d6 |
Network of associatons between targets according to the STRING database.
First level regulatory network of nfia
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 11.0 | GO:0030198 | extracellular matrix organization(GO:0030198) extracellular structure organization(GO:0043062) |
| 0.1 | 7.6 | GO:0003009 | skeletal muscle contraction(GO:0003009) |
| 0.2 | 5.1 | GO:0015671 | oxygen transport(GO:0015671) |
| 0.5 | 4.3 | GO:0097535 | lymphoid lineage cell migration(GO:0097534) lymphoid lineage cell migration into thymus(GO:0097535) |
| 0.1 | 4.3 | GO:0030199 | collagen fibril organization(GO:0030199) |
| 0.1 | 4.3 | GO:0021510 | spinal cord development(GO:0021510) |
| 0.0 | 4.2 | GO:0031101 | fin regeneration(GO:0031101) |
| 1.3 | 4.0 | GO:2000471 | regulation of hematopoietic stem cell migration(GO:2000471) |
| 0.1 | 3.9 | GO:0050654 | chondroitin sulfate proteoglycan metabolic process(GO:0050654) |
| 0.9 | 3.8 | GO:0035630 | bone mineralization involved in bone maturation(GO:0035630) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 38.5 | GO:0005615 | extracellular space(GO:0005615) |
| 0.0 | 14.9 | GO:0005576 | extracellular region(GO:0005576) |
| 0.1 | 14.0 | GO:0016459 | myosin complex(GO:0016459) |
| 0.1 | 8.4 | GO:0005581 | collagen trimer(GO:0005581) |
| 0.2 | 7.6 | GO:0005861 | troponin complex(GO:0005861) |
| 0.4 | 5.1 | GO:0031838 | haptoglobin-hemoglobin complex(GO:0031838) |
| 0.0 | 3.9 | GO:0030018 | Z disc(GO:0030018) |
| 0.2 | 3.5 | GO:0005579 | membrane attack complex(GO:0005579) |
| 0.0 | 3.1 | GO:0030427 | site of polarized growth(GO:0030427) |
| 0.6 | 3.0 | GO:0016533 | cyclin-dependent protein kinase 5 holoenzyme complex(GO:0016533) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 18.9 | GO:0051015 | actin filament binding(GO:0051015) |
| 0.0 | 18.4 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.0 | 17.3 | GO:0005509 | calcium ion binding(GO:0005509) |
| 0.1 | 11.6 | GO:0005201 | extracellular matrix structural constituent(GO:0005201) |
| 0.0 | 11.6 | GO:0046983 | protein dimerization activity(GO:0046983) |
| 0.2 | 7.6 | GO:0005518 | collagen binding(GO:0005518) |
| 0.4 | 5.1 | GO:0031720 | haptoglobin binding(GO:0031720) |
| 0.1 | 5.1 | GO:0005200 | structural constituent of cytoskeleton(GO:0005200) |
| 0.1 | 5.1 | GO:0008201 | heparin binding(GO:0008201) |
| 0.2 | 4.9 | GO:0042056 | chemoattractant activity(GO:0042056) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 7.2 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.2 | 3.7 | PID WNT SIGNALING PATHWAY | Wnt signaling network |
| 0.0 | 3.3 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.0 | 2.6 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
| 0.0 | 2.3 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
| 0.1 | 2.0 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
| 0.0 | 1.8 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.0 | 1.8 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.0 | 1.7 | NABA BASEMENT MEMBRANES | Genes encoding structural components of basement membranes |
| 0.1 | 1.6 | PID INTEGRIN A9B1 PATHWAY | Alpha9 beta1 integrin signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 4.8 | REACTOME CLASS B 2 SECRETIN FAMILY RECEPTORS | Genes involved in Class B/2 (Secretin family receptors) |
| 0.2 | 4.6 | REACTOME COMPLEMENT CASCADE | Genes involved in Complement cascade |
| 0.2 | 4.5 | REACTOME AMYLOIDS | Genes involved in Amyloids |
| 0.2 | 4.1 | REACTOME A TETRASACCHARIDE LINKER SEQUENCE IS REQUIRED FOR GAG SYNTHESIS | Genes involved in A tetrasaccharide linker sequence is required for GAG synthesis |
| 0.0 | 2.9 | REACTOME INTEGRIN CELL SURFACE INTERACTIONS | Genes involved in Integrin cell surface interactions |
| 0.0 | 2.8 | REACTOME RESPIRATORY ELECTRON TRANSPORT | Genes involved in Respiratory electron transport |
| 0.1 | 2.4 | REACTOME SYNTHESIS AND INTERCONVERSION OF NUCLEOTIDE DI AND TRIPHOSPHATES | Genes involved in Synthesis and interconversion of nucleotide di- and triphosphates |
| 0.0 | 2.3 | REACTOME PEPTIDE CHAIN ELONGATION | Genes involved in Peptide chain elongation |
| 0.0 | 1.7 | REACTOME RESPONSE TO ELEVATED PLATELET CYTOSOLIC CA2 | Genes involved in Response to elevated platelet cytosolic Ca2+ |
| 0.0 | 1.6 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |