PRJNA195909:zebrafish embryo and larva development
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
nfatc2a | dr11_v1_chr23_+_39089574_39089574 | -0.63 | 7.0e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr12_-_16595177 Show fit | 2.92 |
ENSDART00000133962
|
si:dkey-239j18.2 |
|
chr24_-_28893251 Show fit | 2.84 |
ENSDART00000042065
ENSDART00000003503 |
collagen, type XI, alpha 1a |
|
chr12_-_16595406 Show fit | 2.51 |
ENSDART00000166798
|
si:dkey-239j18.2 |
|
chr16_-_45910050 Show fit | 2.38 |
ENSDART00000133213
|
antifreeze protein type IV |
|
chr12_-_16941319 Show fit | 2.22 |
ENSDART00000109968
|
zgc:174855 |
|
chr12_-_16923162 Show fit | 2.22 |
ENSDART00000106072
|
si:dkey-26g8.5 |
|
chr12_-_16558106 Show fit | 2.12 |
ENSDART00000109033
|
si:dkey-269i1.4 |
|
chr23_+_36130883 Show fit | 1.97 |
ENSDART00000103132
|
homeobox C4a |
|
chr12_-_16898140 Show fit | 1.97 |
ENSDART00000152656
|
Cathepsin L1-like |
|
chr12_+_16949391 Show fit | 1.94 |
ENSDART00000152635
|
zgc:174153 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 16.5 | GO:0006955 | immune response(GO:0006955) |
0.0 | 7.1 | GO:0048704 | embryonic skeletal system morphogenesis(GO:0048704) |
0.0 | 5.6 | GO:0007156 | homophilic cell adhesion via plasma membrane adhesion molecules(GO:0007156) |
0.0 | 4.7 | GO:0033333 | fin development(GO:0033333) |
0.0 | 3.9 | GO:0043062 | extracellular matrix organization(GO:0030198) extracellular structure organization(GO:0043062) |
0.0 | 3.0 | GO:1990138 | neuron projection extension(GO:1990138) |
0.2 | 2.8 | GO:0016203 | muscle attachment(GO:0016203) |
0.0 | 2.8 | GO:0030318 | melanocyte differentiation(GO:0030318) |
0.1 | 2.5 | GO:0055064 | chloride ion homeostasis(GO:0055064) |
0.1 | 2.4 | GO:0061154 | endothelial tube morphogenesis(GO:0061154) blood vessel lumenization(GO:0072554) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 24.7 | GO:0005615 | extracellular space(GO:0005615) |
0.1 | 15.8 | GO:0005764 | lysosome(GO:0005764) |
0.0 | 10.8 | GO:0005576 | extracellular region(GO:0005576) |
0.0 | 8.9 | GO:0031012 | extracellular matrix(GO:0031012) |
0.1 | 6.3 | GO:0005581 | collagen trimer(GO:0005581) |
0.3 | 3.4 | GO:0042627 | chylomicron(GO:0042627) |
0.0 | 3.2 | GO:0031674 | I band(GO:0031674) |
0.1 | 2.7 | GO:0022627 | cytosolic small ribosomal subunit(GO:0022627) |
0.0 | 2.7 | GO:0034707 | chloride channel complex(GO:0034707) |
0.1 | 2.6 | GO:0043195 | terminal bouton(GO:0043195) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 23.3 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
0.1 | 21.1 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
0.0 | 20.3 | GO:0005509 | calcium ion binding(GO:0005509) |
0.1 | 8.4 | GO:0005201 | extracellular matrix structural constituent(GO:0005201) |
0.0 | 7.0 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
0.2 | 5.8 | GO:0048306 | calcium-dependent protein binding(GO:0048306) |
0.1 | 5.3 | GO:0005178 | integrin binding(GO:0005178) |
0.0 | 4.5 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
0.0 | 3.3 | GO:0004222 | metalloendopeptidase activity(GO:0004222) |
0.3 | 2.8 | GO:0001972 | retinoic acid binding(GO:0001972) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 7.1 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.0 | 5.1 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.0 | 3.5 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.1 | 2.5 | PID BMP PATHWAY | BMP receptor signaling |
0.1 | 2.5 | NABA BASEMENT MEMBRANES | Genes encoding structural components of basement membranes |
0.1 | 1.8 | PID INTEGRIN A9B1 PATHWAY | Alpha9 beta1 integrin signaling events |
0.0 | 1.8 | PID AP1 PATHWAY | AP-1 transcription factor network |
0.1 | 1.6 | PID HEDGEHOG 2PATHWAY | Signaling events mediated by the Hedgehog family |
0.0 | 1.5 | PID CMYB PATHWAY | C-MYB transcription factor network |
0.1 | 1.2 | PID THROMBIN PAR4 PATHWAY | PAR4-mediated thrombin signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.9 | REACTOME PEPTIDE CHAIN ELONGATION | Genes involved in Peptide chain elongation |
0.1 | 2.8 | REACTOME COLLAGEN FORMATION | Genes involved in Collagen formation |
0.2 | 2.4 | REACTOME COMMON PATHWAY | Genes involved in Common Pathway |
0.0 | 1.9 | REACTOME RESPIRATORY ELECTRON TRANSPORT ATP SYNTHESIS BY CHEMIOSMOTIC COUPLING AND HEAT PRODUCTION BY UNCOUPLING PROTEINS | Genes involved in Respiratory electron transport, ATP synthesis by chemiosmotic coupling, and heat production by uncoupling proteins. |
0.2 | 1.8 | REACTOME CHYLOMICRON MEDIATED LIPID TRANSPORT | Genes involved in Chylomicron-mediated lipid transport |
0.1 | 1.7 | REACTOME STRIATED MUSCLE CONTRACTION | Genes involved in Striated Muscle Contraction |
0.0 | 1.6 | REACTOME CLASS B 2 SECRETIN FAMILY RECEPTORS | Genes involved in Class B/2 (Secretin family receptors) |
0.1 | 1.4 | REACTOME G PROTEIN ACTIVATION | Genes involved in G-protein activation |
0.0 | 1.4 | REACTOME INTEGRIN CELL SURFACE INTERACTIONS | Genes involved in Integrin cell surface interactions |
0.1 | 1.3 | REACTOME REGULATION OF BETA CELL DEVELOPMENT | Genes involved in Regulation of beta-cell development |