PRJNA195909:zebrafish embryo and larva development
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
msc | dr11_v1_chr24_+_13735616_13735616 | 0.63 | 6.8e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr7_+_44715224 Show fit | 3.53 |
ENSDART00000184630
|
si:dkey-56m19.5 |
|
chr11_-_5865744 Show fit | 3.34 |
ENSDART00000104360
|
guanidinoacetate N-methyltransferase |
|
chr5_-_19400166 Show fit | 3.15 |
ENSDART00000008994
|
forkhead box N4 |
|
chr21_+_27382893 Show fit | 2.95 |
ENSDART00000005682
|
actinin alpha 3a |
|
chr5_-_40734045 Show fit | 2.65 |
ENSDART00000010896
|
ISL LIM homeobox 1 |
|
chr7_-_24364536 Show fit | 2.62 |
ENSDART00000064789
|
thioredoxin |
|
chr1_+_52560549 Show fit | 2.43 |
ENSDART00000167514
|
ATP-binding cassette, sub-family A (ABC1), member 1A |
|
chr17_-_14836320 Show fit | 2.41 |
ENSDART00000157051
|
nidogen 2a (osteonidogen) |
|
chr5_-_38451082 Show fit | 2.39 |
ENSDART00000136428
|
cholinergic receptor, nicotinic, epsilon |
|
chr13_+_42124566 Show fit | 2.38 |
ENSDART00000074707
|
CDC42 effector protein (Rho GTPase binding) 3 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.7 | 3.5 | GO:0003210 | cardiac atrium formation(GO:0003210) |
1.1 | 3.3 | GO:0006600 | creatine metabolic process(GO:0006600) creatine biosynthetic process(GO:0006601) |
0.5 | 3.1 | GO:0035881 | amacrine cell differentiation(GO:0035881) |
0.2 | 2.9 | GO:0051764 | actin crosslink formation(GO:0051764) |
0.1 | 2.8 | GO:0021854 | hypothalamus development(GO:0021854) |
0.3 | 2.6 | GO:0006662 | glycerol ether metabolic process(GO:0006662) ether metabolic process(GO:0018904) |
0.6 | 2.4 | GO:0010874 | regulation of cholesterol efflux(GO:0010874) |
0.3 | 2.4 | GO:0098773 | skin epidermis development(GO:0098773) |
0.2 | 2.4 | GO:0031268 | pseudopodium organization(GO:0031268) pseudopodium assembly(GO:0031269) regulation of pseudopodium assembly(GO:0031272) positive regulation of pseudopodium assembly(GO:0031274) |
0.1 | 2.4 | GO:0007271 | synaptic transmission, cholinergic(GO:0007271) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 6.3 | GO:0031012 | extracellular matrix(GO:0031012) |
0.1 | 5.8 | GO:0005882 | intermediate filament(GO:0005882) |
0.0 | 4.0 | GO:0009986 | cell surface(GO:0009986) |
0.1 | 3.8 | GO:0005861 | troponin complex(GO:0005861) |
0.0 | 2.5 | GO:0043197 | dendritic spine(GO:0043197) neuron spine(GO:0044309) |
0.2 | 2.4 | GO:0090533 | sodium:potassium-exchanging ATPase complex(GO:0005890) cation-transporting ATPase complex(GO:0090533) |
0.2 | 2.4 | GO:0005892 | acetylcholine-gated channel complex(GO:0005892) |
0.0 | 2.4 | GO:0005604 | basement membrane(GO:0005604) |
0.1 | 2.2 | GO:0043256 | basal lamina(GO:0005605) laminin complex(GO:0043256) |
0.0 | 2.0 | GO:0031225 | anchored component of membrane(GO:0031225) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 16.0 | GO:0005509 | calcium ion binding(GO:0005509) |
0.3 | 4.7 | GO:0008327 | methyl-CpG binding(GO:0008327) |
0.9 | 4.5 | GO:0004012 | phospholipid-translocating ATPase activity(GO:0004012) phosphatidylcholine-translocating ATPase activity(GO:0090554) phosphatidylserine-translocating ATPase activity(GO:0090556) |
0.3 | 3.5 | GO:0032036 | myosin heavy chain binding(GO:0032036) |
0.1 | 3.2 | GO:0001540 | beta-amyloid binding(GO:0001540) |
0.0 | 2.6 | GO:0005201 | extracellular matrix structural constituent(GO:0005201) |
0.0 | 2.6 | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity(GO:0008757) |
0.1 | 2.4 | GO:0042813 | Wnt-activated receptor activity(GO:0042813) |
0.1 | 2.4 | GO:0001671 | ATPase activator activity(GO:0001671) |
0.1 | 2.4 | GO:0022848 | acetylcholine-gated cation channel activity(GO:0022848) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.9 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.1 | 2.6 | PID P38 MKK3 6PATHWAY | p38 MAPK signaling pathway |
0.1 | 2.4 | PID WNT SIGNALING PATHWAY | Wnt signaling network |
0.0 | 2.4 | PID ERBB2 ERBB3 PATHWAY | ErbB2/ErbB3 signaling events |
0.1 | 1.8 | PID ALK1 PATHWAY | ALK1 signaling events |
0.1 | 1.6 | SA REG CASCADE OF CYCLIN EXPR | Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases. |
0.0 | 1.4 | PID AP1 PATHWAY | AP-1 transcription factor network |
0.1 | 1.3 | PID INSULIN GLUCOSE PATHWAY | Insulin-mediated glucose transport |
0.0 | 1.3 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
0.0 | 0.9 | PID CASPASE PATHWAY | Caspase cascade in apoptosis |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.5 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
0.1 | 3.3 | REACTOME CLASS B 2 SECRETIN FAMILY RECEPTORS | Genes involved in Class B/2 (Secretin family receptors) |
0.2 | 2.7 | REACTOME SYNTHESIS SECRETION AND INACTIVATION OF GIP | Genes involved in Synthesis, Secretion, and Inactivation of Glucose-dependent Insulinotropic Polypeptide (GIP) |
0.5 | 2.6 | REACTOME THE NLRP3 INFLAMMASOME | Genes involved in The NLRP3 inflammasome |
0.3 | 2.4 | REACTOME PRESYNAPTIC NICOTINIC ACETYLCHOLINE RECEPTORS | Genes involved in Presynaptic nicotinic acetylcholine receptors |
0.1 | 1.9 | REACTOME POST CHAPERONIN TUBULIN FOLDING PATHWAY | Genes involved in Post-chaperonin tubulin folding pathway |
0.0 | 1.8 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
0.3 | 1.5 | REACTOME SYNTHESIS SECRETION AND DEACYLATION OF GHRELIN | Genes involved in Synthesis, Secretion, and Deacylation of Ghrelin |
0.1 | 1.4 | REACTOME PURINE SALVAGE | Genes involved in Purine salvage |
0.0 | 1.2 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |