Project

PRJNA195909:zebrafish embryo and larva development

Navigation
Downloads

Results for hoxd3a

Z-value: 0.47

Motif logo

logo of

Transcription factors associated with hoxd3a

Gene Symbol Gene ID Gene Info
hoxd3a
ENSDARG00000059280 homeobox D3a

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
hoxd3adr11_v1_chr9_-_1949915_19499150.599.8e-02Click!

Activity profile of hoxd3a motif

Sorted Z-values of hoxd3a motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr25_+_31276842 0.91 ENSDART00000187238
tnni2a.4
troponin I type 2a (skeletal, fast), tandem duplicate 4
chr1_+_52392511 0.77 ENSDART00000144025
si:ch211-217k17.8
si:ch211-217k17.8
chr10_+_39084354 0.76 ENSDART00000158245
si:ch73-1a9.3
si:ch73-1a9.3
chr7_-_48667056 0.58 ENSDART00000006378
cdkn1ca
cyclin-dependent kinase inhibitor 1Ca
chr17_+_23298928 0.56 ENSDART00000153652
zgc:165461
zgc:165461
chr9_-_21918963 0.52 ENSDART00000090782
lmo7a
LIM domain 7a
chr20_-_7072487 0.51 ENSDART00000145954
si:ch211-121a2.2
si:ch211-121a2.2
chr18_+_3037998 0.46 ENSDART00000185844
ENSDART00000162657
rps3
ribosomal protein S3
chr25_+_29160102 0.43 ENSDART00000162854
pkmb
pyruvate kinase M1/2b
chr1_-_58036509 0.41 ENSDART00000081122
COLGALT1
si:ch211-114l13.7
chr8_-_31107537 0.39 ENSDART00000098925
vgll4l
vestigial like 4 like
chr3_+_30500968 0.38 ENSDART00000103447
si:dkey-13n23.3
si:dkey-13n23.3
chr4_+_58576146 0.38 ENSDART00000164911
si:ch211-212k5.4
si:ch211-212k5.4
chr12_+_24952902 0.37 ENSDART00000189086
ENSDART00000014868
calm3a
calmodulin 3a (phosphorylase kinase, delta)
chr1_-_40911332 0.36 ENSDART00000027463
hmx4
H6 family homeobox 4
chr8_+_17078692 0.36 ENSDART00000023206
plk2b
polo-like kinase 2b (Drosophila)
chr15_-_35252522 0.36 ENSDART00000144153
ENSDART00000059195
mff
mitochondrial fission factor
chr20_+_539852 0.34 ENSDART00000185994
dse
dermatan sulfate epimerase
chr15_+_5360407 0.32 ENSDART00000110420
or112-1
odorant receptor, family A, subfamily 112, member 1
chr13_-_31435137 0.32 ENSDART00000057441
rtn1a
reticulon 1a
chr11_-_40728380 0.32 ENSDART00000023745
ccdc114
coiled-coil domain containing 114
chr16_+_5251768 0.31 ENSDART00000144558
plecb
plectin b
chr10_+_39091353 0.31 ENSDART00000125986
si:ch73-1a9.4
si:ch73-1a9.4
chr16_+_31804590 0.28 ENSDART00000167321
wnt4b
wingless-type MMTV integration site family, member 4b
chr10_-_26744131 0.28 ENSDART00000020096
ENSDART00000162710
ENSDART00000179853
fgf13b
fibroblast growth factor 13b
chr19_-_27462720 0.26 ENSDART00000135901
si:ch73-25f10.6
si:ch73-25f10.6
chr3_+_27798094 0.25 ENSDART00000075100
ENSDART00000151437
carhsp1
calcium regulated heat stable protein 1
chr14_+_5385855 0.23 ENSDART00000031508
lbx2
ladybird homeobox 2
chr3_-_34084387 0.22 ENSDART00000155365
ighv4-3
immunoglobulin heavy variable 4-3
chr16_+_14707960 0.22 ENSDART00000137912
col14a1a
collagen, type XIV, alpha 1a
chr4_+_47636303 0.22 ENSDART00000167272
ENSDART00000166961
BX324142.1

chr22_-_10117918 0.22 ENSDART00000177475
ENSDART00000128590
rdh5
retinol dehydrogenase 5 (11-cis/9-cis)
chr1_-_50859053 0.21 ENSDART00000132779
ENSDART00000137648
si:dkeyp-123h10.2
si:dkeyp-123h10.2
chr12_+_30265802 0.21 ENSDART00000182412
afap1l2
actin filament associated protein 1-like 2
chr10_+_39091716 0.21 ENSDART00000193072
si:ch73-1a9.4
si:ch73-1a9.4
chr23_+_579893 0.19 ENSDART00000189098
BX323461.1

chr8_+_22405477 0.18 ENSDART00000148267
si:dkey-23c22.7
si:dkey-23c22.7
chr20_-_14925281 0.18 ENSDART00000152641
dnm3a
dynamin 3a
chr20_-_46362606 0.16 ENSDART00000153087
bmf2
BCL2 modifying factor 2
chr19_-_6988837 0.16 ENSDART00000145741
ENSDART00000167640
znf384l
zinc finger protein 384 like
chr20_-_14924858 0.15 ENSDART00000047039
dnm3a
dynamin 3a
chr8_-_50888806 0.13 ENSDART00000053750
acsl2
acyl-CoA synthetase long chain family member 2
chr14_+_22591624 0.12 ENSDART00000108987
gfra4b
GDNF family receptor alpha 4b
chr7_+_24165371 0.11 ENSDART00000173472
si:ch211-216p19.5
si:ch211-216p19.5
chr21_-_35419486 0.11 ENSDART00000138529
si:dkeyp-23e4.3
si:dkeyp-23e4.3
chr1_+_56755536 0.10 ENSDART00000157727
CABZ01049361.1

chr5_-_38094130 0.09 ENSDART00000131831
si:ch211-284e13.4
si:ch211-284e13.4
chr10_-_41400049 0.08 ENSDART00000009838
gpat4
glycerol-3-phosphate acyltransferase 4
chr4_-_71210030 0.08 ENSDART00000186473
si:ch211-205a14.7
si:ch211-205a14.7
chr8_-_30979494 0.08 ENSDART00000138959
si:ch211-251j10.3
si:ch211-251j10.3
chr22_-_209741 0.08 ENSDART00000171954
ora1
olfactory receptor class A related 1
chr6_+_41191482 0.07 ENSDART00000000877
opn1mw3
opsin 1 (cone pigments), medium-wave-sensitive, 3
chr10_+_11355841 0.07 ENSDART00000193067
ENSDART00000064215
cops4
COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis)
chr17_-_37054959 0.07 ENSDART00000151921
dnmt3ab
DNA (cytosine-5-)-methyltransferase 3 alpha b
chr10_+_43039947 0.07 ENSDART00000193434
atg10
ATG10 autophagy related 10 homolog (S. cerevisiae)
chr12_+_22580579 0.06 ENSDART00000171725
ENSDART00000192290
capgb
capping protein (actin filament), gelsolin-like b
chr19_-_10971230 0.06 ENSDART00000166196
LO018584.1

chr19_-_14155781 0.05 ENSDART00000169232
nr0b2b
nuclear receptor subfamily 0, group B, member 2b
chr21_-_37790727 0.05 ENSDART00000162907
gabrb4
gamma-aminobutyric acid (GABA) A receptor, beta 4
chr5_+_66353589 0.05 ENSDART00000138246
si:ch211-261c8.5
si:ch211-261c8.5
chr15_+_31899312 0.05 ENSDART00000155315
frya
furry homolog a (Drosophila)
chr8_+_25034544 0.04 ENSDART00000123300
ngrn
neugrin, neurite outgrowth associated
chr5_-_3684402 0.04 ENSDART00000184354
FO704648.1

chr14_+_30762131 0.03 ENSDART00000145039
si:ch211-145o7.3
si:ch211-145o7.3
chr4_+_73085993 0.03 ENSDART00000165749
si:ch73-170d6.2
si:ch73-170d6.2
chr18_+_9362455 0.03 ENSDART00000187025
sema3ab
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ab
chr13_-_44630111 0.03 ENSDART00000110092
mdga1
MAM domain containing glycosylphosphatidylinositol anchor 1
chr20_-_9095105 0.02 ENSDART00000140792
oma1
OMA1 zinc metallopeptidase
chr6_-_40029423 0.02 ENSDART00000103230
pfkfb4b
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4b
chr18_+_17827149 0.02 ENSDART00000190237
ENSDART00000189345
ZNF423
si:ch211-216l23.1
chr10_-_5847655 0.02 ENSDART00000192773
ankrd55
ankyrin repeat domain 55
chr9_+_22364997 0.01 ENSDART00000188054
ENSDART00000046116
crygs3
crystallin, gamma S3
chr19_+_11217279 0.01 ENSDART00000181859
si:ch73-109i22.2
si:ch73-109i22.2
chr11_+_2391469 0.01 ENSDART00000182121
igfbp6a
insulin-like growth factor binding protein 6a
chr5_+_28160503 0.01 ENSDART00000051516
tacr1a
tachykinin receptor 1a
chr19_-_7690975 0.00 ENSDART00000151384
si:dkey-204a24.10
si:dkey-204a24.10

Network of associatons between targets according to the STRING database.

First level regulatory network of hoxd3a

PNG image of the network

In order to view interactive SVG image please either update your browser to latest version or install SVG plugin.
View svg image
View png image

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.6 GO:1904030 negative regulation of cyclin-dependent protein serine/threonine kinase activity(GO:0045736) negative regulation of cyclin-dependent protein kinase activity(GO:1904030)
0.1 0.2 GO:0032677 interleukin-8 production(GO:0032637) regulation of interleukin-8 production(GO:0032677) positive regulation of interleukin-8 production(GO:0032757)
0.1 0.3 GO:0030205 dermatan sulfate metabolic process(GO:0030205)
0.0 0.2 GO:1904105 positive regulation of convergent extension involved in gastrulation(GO:1904105)
0.0 0.6 GO:0016102 diterpenoid biosynthetic process(GO:0016102)
0.0 0.5 GO:2001235 positive regulation of apoptotic signaling pathway(GO:2001235)
0.0 0.3 GO:1905150 regulation of voltage-gated sodium channel activity(GO:1905150)
0.0 0.9 GO:0003009 skeletal muscle contraction(GO:0003009)
0.0 0.3 GO:0098884 postsynaptic neurotransmitter receptor internalization(GO:0098884)
0.0 0.3 GO:0031581 hemidesmosome assembly(GO:0031581)
0.0 0.2 GO:2000406 positive regulation of lymphocyte migration(GO:2000403) positive regulation of T cell migration(GO:2000406)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 GO:0005614 interstitial matrix(GO:0005614)
0.0 0.3 GO:0030056 hemidesmosome(GO:0030056)
0.0 0.9 GO:0005861 troponin complex(GO:0005861)
0.0 0.3 GO:0098844 postsynaptic endocytic zone membrane(GO:0098844)
0.0 0.2 GO:0042571 immunoglobulin complex, circulating(GO:0042571)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0001223 transcription coactivator binding(GO:0001223)
0.1 0.6 GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity(GO:0004861)
0.1 0.4 GO:0004743 pyruvate kinase activity(GO:0004743)
0.1 0.3 GO:0047757 chondroitin-glucuronate 5-epimerase activity(GO:0047757)
0.0 0.2 GO:0042169 SH2 domain binding(GO:0042169)
0.0 0.8 GO:0031492 nucleosomal DNA binding(GO:0031492)
0.0 0.1 GO:0072545 tyrosine binding(GO:0072545)
0.0 0.1 GO:0019777 Atg12 transferase activity(GO:0019777)
0.0 0.3 GO:0030506 ankyrin binding(GO:0030506)
0.0 0.1 GO:0047676 arachidonate-CoA ligase activity(GO:0047676)
0.0 0.2 GO:0034987 immunoglobulin receptor binding(GO:0034987)
0.0 0.3 GO:0017080 sodium channel regulator activity(GO:0017080)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 PID CONE PATHWAY Visual signal transduction: Cones