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PRJNA195909:zebrafish embryo and larva development
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Results for hoxc9a
Z-value: 1.88
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Transcription factors associated with hoxc9a
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| hoxc9a | dr11_v1_chr23_+_36095260_36095260 | 0.84 | 5.1e-03 | Click! |
Network of associatons between targets according to the STRING database.
First level regulatory network of hoxc9a
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.0 | 6.0 | GO:0021767 | mammillary body development(GO:0021767) |
| 0.1 | 5.4 | GO:0035249 | synaptic transmission, glutamatergic(GO:0035249) |
| 0.8 | 4.0 | GO:0003210 | cardiac atrium formation(GO:0003210) |
| 0.6 | 4.0 | GO:0060017 | parathyroid gland development(GO:0060017) |
| 0.1 | 3.5 | GO:0030032 | lamellipodium assembly(GO:0030032) |
| 0.0 | 3.5 | GO:0048704 | embryonic skeletal system morphogenesis(GO:0048704) |
| 0.2 | 2.8 | GO:1903963 | icosanoid secretion(GO:0032309) arachidonic acid secretion(GO:0050482) acylglycerol homeostasis(GO:0055090) triglyceride homeostasis(GO:0070328) arachidonate transport(GO:1903963) |
| 0.0 | 2.8 | GO:0008217 | regulation of blood pressure(GO:0008217) |
| 0.1 | 2.6 | GO:0002574 | thrombocyte differentiation(GO:0002574) |
| 0.0 | 2.3 | GO:0042462 | eye photoreceptor cell development(GO:0042462) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.4 | 5.5 | GO:0032983 | kainate selective glutamate receptor complex(GO:0032983) |
| 0.1 | 2.9 | GO:0043204 | perikaryon(GO:0043204) |
| 0.1 | 2.6 | GO:0005885 | Arp2/3 protein complex(GO:0005885) |
| 0.0 | 2.2 | GO:0097517 | stress fiber(GO:0001725) contractile actin filament bundle(GO:0097517) |
| 0.0 | 1.9 | GO:0099501 | synaptic vesicle membrane(GO:0030672) exocytic vesicle membrane(GO:0099501) |
| 0.1 | 1.6 | GO:0008250 | oligosaccharyltransferase complex(GO:0008250) |
| 0.1 | 1.3 | GO:0071565 | nBAF complex(GO:0071565) |
| 0.1 | 1.2 | GO:0014704 | intercalated disc(GO:0014704) |
| 0.0 | 1.2 | GO:0005882 | intermediate filament(GO:0005882) |
| 0.2 | 0.8 | GO:0016533 | cyclin-dependent protein kinase 5 holoenzyme complex(GO:0016533) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.4 | 5.5 | GO:0015277 | kainate selective glutamate receptor activity(GO:0015277) |
| 0.0 | 4.3 | GO:0051015 | actin filament binding(GO:0051015) |
| 0.4 | 4.0 | GO:0032036 | myosin heavy chain binding(GO:0032036) |
| 0.0 | 3.5 | GO:0019838 | growth factor binding(GO:0019838) |
| 0.1 | 2.8 | GO:0004623 | phospholipase A2 activity(GO:0004623) |
| 0.0 | 2.2 | GO:0004386 | helicase activity(GO:0004386) |
| 0.0 | 1.9 | GO:0048020 | CCR chemokine receptor binding(GO:0048020) |
| 0.0 | 1.9 | GO:0017075 | syntaxin-1 binding(GO:0017075) |
| 0.4 | 1.6 | GO:0061629 | RNA polymerase II sequence-specific DNA binding transcription factor binding(GO:0061629) |
| 0.1 | 1.6 | GO:0008199 | ferric iron binding(GO:0008199) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.4 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 0.0 | 2.4 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.1 | 1.0 | PID IL8 CXCR1 PATHWAY | IL8- and CXCR1-mediated signaling events |
| 0.0 | 0.8 | ST WNT CA2 CYCLIC GMP PATHWAY | Wnt/Ca2+/cyclic GMP signaling. |
| 0.0 | 0.3 | PID EPHA FWDPATHWAY | EPHA forward signaling |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.6 | REACTOME DARPP 32 EVENTS | Genes involved in DARPP-32 events |
| 0.0 | 1.6 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.1 | 1.1 | REACTOME SYNTHESIS OF VERY LONG CHAIN FATTY ACYL COAS | Genes involved in Synthesis of very long-chain fatty acyl-CoAs |
| 0.1 | 1.1 | REACTOME HYALURONAN UPTAKE AND DEGRADATION | Genes involved in Hyaluronan uptake and degradation |
| 0.0 | 1.0 | REACTOME ACTIVATED NOTCH1 TRANSMITS SIGNAL TO THE NUCLEUS | Genes involved in Activated NOTCH1 Transmits Signal to the Nucleus |
| 0.0 | 0.3 | REACTOME RETROGRADE NEUROTROPHIN SIGNALLING | Genes involved in Retrograde neurotrophin signalling |