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PRJNA195909:zebrafish embryo and larva development

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Results for hoxb7a

Z-value: 0.68

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Transcription factors associated with hoxb7a

Gene Symbol Gene ID Gene Info
hoxb7a
ENSDARG00000056030 homeobox B7a

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
hoxb7adr11_v1_chr3_+_23691847_23691847-0.684.4e-02Click!

Activity profile of hoxb7a motif

Sorted Z-values of hoxb7a motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr10_-_21362071 0.93 ENSDART00000125167
avd
avidin
chr10_-_21362320 0.93 ENSDART00000189789
avd
avidin
chr2_-_1486023 0.81 ENSDART00000113774
si:ch211-188c16.1
si:ch211-188c16.1
chr17_+_16090436 0.80 ENSDART00000136059
ENSDART00000138734
znf395a
zinc finger protein 395a
chr16_-_42965192 0.67 ENSDART00000113714
mtx1a
metaxin 1a
chr22_-_19102256 0.57 ENSDART00000171866
ENSDART00000166295
polrmt
polymerase (RNA) mitochondrial (DNA directed)
chr23_-_25779995 0.57 ENSDART00000110670
si:dkey-21c19.3
si:dkey-21c19.3
chr6_+_9898683 0.56 ENSDART00000005573
tmem237b
transmembrane protein 237b
chr13_-_5252559 0.56 ENSDART00000181652
si:dkey-78p8.1
si:dkey-78p8.1
chr19_+_2631565 0.50 ENSDART00000171487
fam126a
family with sequence similarity 126, member A
chr9_+_21793565 0.49 ENSDART00000134915
rev1
REV1, polymerase (DNA directed)
chr10_-_13343831 0.48 ENSDART00000135941
il11ra
interleukin 11 receptor, alpha
chr9_-_27398369 0.47 ENSDART00000186499
tex30
testis expressed 30
chr18_+_14619544 0.45 ENSDART00000010821
utp4
UTP4, small subunit processome component
chr21_-_34032650 0.42 ENSDART00000138575
ENSDART00000047515
rnf145b
ring finger protein 145b
chr2_+_105748 0.42 ENSDART00000169601
CABZ01098670.1

chr18_-_15551360 0.42 ENSDART00000159915
ENSDART00000172690
ppfibp1b
PTPRF interacting protein, binding protein 1b (liprin beta 1)
chr7_+_7696665 0.41 ENSDART00000091099
ino80b
INO80 complex subunit B
chr8_+_7801060 0.40 ENSDART00000161618
tfe3a
transcription factor binding to IGHM enhancer 3a
chr3_-_36602379 0.40 ENSDART00000161501
ENSDART00000162396
rrn3
RRN3 homolog, RNA polymerase I transcription factor
chr10_-_31015535 0.40 ENSDART00000146116
panx3
pannexin 3
chr4_-_1801519 0.38 ENSDART00000188604
ENSDART00000135749
nudt4b
nudix (nucleoside diphosphate linked moiety X)-type motif 4b
chr23_-_36857964 0.38 ENSDART00000188822
ENSDART00000134061
ENSDART00000093061
hipk1a
homeodomain interacting protein kinase 1a
chr2_+_15048410 0.37 ENSDART00000058484
cnn3b
calponin 3, acidic b
chr23_+_39462208 0.36 ENSDART00000136707
mical1
microtubule associated monooxygenase, calponin and LIM domain containing 1
chr5_-_23675222 0.36 ENSDART00000135153
TBC1D8B
si:dkey-110k5.6
chr23_+_39461989 0.36 ENSDART00000184761
mical1
microtubule associated monooxygenase, calponin and LIM domain containing 1
chr12_-_4243268 0.35 ENSDART00000131275
zgc:92313
zgc:92313
chr17_+_30369396 0.35 ENSDART00000076611
greb1
growth regulation by estrogen in breast cancer 1
chr21_-_13123176 0.34 ENSDART00000144866
ENSDART00000024616
fam219aa
family with sequence similarity 219, member Aa
chr3_+_26288981 0.34 ENSDART00000163500
rhot1a
ras homolog family member T1a
chr3_-_36602069 0.34 ENSDART00000165414
rrn3
RRN3 homolog, RNA polymerase I transcription factor
chr23_+_28809002 0.33 ENSDART00000134121
ENSDART00000183661
pex14
peroxisomal biogenesis factor 14
chr15_-_43284021 0.32 ENSDART00000041677
serpine2
serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2
chr12_+_47698356 0.31 ENSDART00000112010
lzts2b
leucine zipper, putative tumor suppressor 2b
chr15_+_28318005 0.31 ENSDART00000175860
myo1cb
myosin Ic, paralog b
chr17_-_49438873 0.29 ENSDART00000004424
znf292a
zinc finger protein 292a
chr2_+_20793982 0.29 ENSDART00000014785
prg4a
proteoglycan 4a
chr24_-_16980337 0.28 ENSDART00000183812
klhl15
kelch-like family member 15
chr23_+_4709607 0.28 ENSDART00000166503
ENSDART00000158752
ENSDART00000163860
ENSDART00000172739
raf1a
raf1a
Raf-1 proto-oncogene, serine/threonine kinase a
Raf-1 proto-oncogene, serine/threonine kinase a
chr7_+_23292133 0.27 ENSDART00000134489
htr2cl1
5-hydroxytryptamine (serotonin) receptor 2C, G protein-coupled-like 1
chr1_+_22851261 0.26 ENSDART00000193925
gtf2e2
general transcription factor IIE, polypeptide 2, beta
chr21_-_15200556 0.26 ENSDART00000141809
sfswap
splicing factor SWAP
chr22_-_22301929 0.25 ENSDART00000142027
chaf1a
chromatin assembly factor 1, subunit A (p150)
chr3_-_20040636 0.25 ENSDART00000104118
atxn7l3
ataxin 7-like 3
chr22_-_22301672 0.24 ENSDART00000111711
chaf1a
chromatin assembly factor 1, subunit A (p150)
chr25_-_3058687 0.22 ENSDART00000149117
ENSDART00000137950
si:ch1073-296i8.2
si:ch1073-296i8.2
chr10_-_11261565 0.22 ENSDART00000146727
ptbp3
polypyrimidine tract binding protein 3
chr17_+_51682429 0.21 ENSDART00000004379
nol10
nucleolar protein 10
chr9_-_43538328 0.20 ENSDART00000140526
znf385b
zinc finger protein 385B
chr14_+_16287968 0.18 ENSDART00000106593
prpf19
pre-mRNA processing factor 19
chr2_-_7246848 0.18 ENSDART00000146434
zgc:153115
zgc:153115
chr16_+_40024883 0.18 ENSDART00000110100
hint3
histidine triad nucleotide binding protein 3
chr13_+_10945337 0.17 ENSDART00000091845
abcg5
ATP-binding cassette, sub-family G (WHITE), member 5
chr13_-_10945288 0.14 ENSDART00000114315
ENSDART00000164667
ENSDART00000159482
abcg8
ATP-binding cassette, sub-family G (WHITE), member 8
chr23_-_36446307 0.14 ENSDART00000136623
zgc:174906
zgc:174906
chr6_+_21992820 0.14 ENSDART00000147507
thumpd3
THUMP domain containing 3
chr6_-_43677125 0.13 ENSDART00000150128
foxp1b
forkhead box P1b
chr17_+_20589553 0.12 ENSDART00000154447
si:ch73-288o11.4
si:ch73-288o11.4
chr18_+_2228737 0.11 ENSDART00000165301
rab27a
RAB27A, member RAS oncogene family
chr9_+_54039006 0.11 ENSDART00000112441
tlr7
toll-like receptor 7
chr21_+_8276989 0.11 ENSDART00000028265
nr5a1b
nuclear receptor subfamily 5, group A, member 1b
chr9_+_1139378 0.11 ENSDART00000170033
slc15a1a
solute carrier family 15 (oligopeptide transporter), member 1a
chr7_+_21272833 0.11 ENSDART00000052942
serpinh2
serine (or cysteine) peptidase inhibitor, clade H, member 2
chr21_+_34088377 0.10 ENSDART00000170070
mtmr1b
myotubularin related protein 1b
chr25_-_13490744 0.10 ENSDART00000056721
ldhd
lactate dehydrogenase D
chr21_+_34088110 0.09 ENSDART00000145123
ENSDART00000029599
ENSDART00000147519
mtmr1b
myotubularin related protein 1b
chr13_-_12602920 0.09 ENSDART00000102311
lrit3b
leucine-rich repeat, immunoglobulin-like and transmembrane domains 3b
chr19_+_5480327 0.08 ENSDART00000148794
jupb
junction plakoglobin b
chr3_-_31079186 0.07 ENSDART00000145636
ENSDART00000140569
ELOB (1 of many)
elob
elongin B
elongin B
chr17_+_44697604 0.07 ENSDART00000156625
pgfb
placental growth factor b
chr15_+_857148 0.07 ENSDART00000156949
si:dkey-7i4.13
si:dkey-7i4.13
chr17_+_31914877 0.06 ENSDART00000177801
FAM196A (1 of many)
family with sequence similarity 196 member A
chr18_-_33080454 0.06 ENSDART00000191907
v2ra18
vomeronasal 2 receptor, a18
chr10_+_11261576 0.06 ENSDART00000155333
hsdl2
hydroxysteroid dehydrogenase like 2
chr8_-_50888806 0.04 ENSDART00000053750
acsl2
acyl-CoA synthetase long chain family member 2
chr24_+_7800486 0.04 ENSDART00000145504
ptprh
protein tyrosine phosphatase, receptor type, h
chr8_+_25034544 0.02 ENSDART00000123300
ngrn
neugrin, neurite outgrowth associated
chr15_-_40246396 0.02 ENSDART00000063777
kcnj13
potassium inwardly-rectifying channel, subfamily J, member 13
chr9_-_32177117 0.02 ENSDART00000078568
sf3b1
splicing factor 3b, subunit 1
chr4_+_70151160 0.02 ENSDART00000111816
si:dkey-3h2.4
si:dkey-3h2.4
chr19_-_5103313 0.02 ENSDART00000037007
tpi1a
triosephosphate isomerase 1a
chr2_+_38373272 0.01 ENSDART00000113111
psmb5
proteasome subunit beta 5
chr5_+_21144269 0.01 ENSDART00000028087
cds2
CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2
chr12_+_48803098 0.01 ENSDART00000074768
ppifb
peptidylprolyl isomerase Fb
chr5_+_34623107 0.00 ENSDART00000184126
enc1
ectodermal-neural cortex 1

Network of associatons between targets according to the STRING database.

First level regulatory network of hoxb7a

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.7 GO:0019417 sulfur oxidation(GO:0019417)
0.1 0.5 GO:0070987 error-free translesion synthesis(GO:0070987)
0.1 0.6 GO:2000001 regulation of DNA damage checkpoint(GO:2000001)
0.1 0.7 GO:0006361 transcription initiation from RNA polymerase I promoter(GO:0006361)
0.1 0.4 GO:1901909 diphosphoinositol polyphosphate metabolic process(GO:0071543) diadenosine pentaphosphate metabolic process(GO:1901906) diadenosine pentaphosphate catabolic process(GO:1901907) diadenosine hexaphosphate metabolic process(GO:1901908) diadenosine hexaphosphate catabolic process(GO:1901909) adenosine 5'-(hexahydrogen pentaphosphate) metabolic process(GO:1901910) adenosine 5'-(hexahydrogen pentaphosphate) catabolic process(GO:1901911)
0.1 0.6 GO:0006390 transcription from mitochondrial promoter(GO:0006390)
0.1 0.4 GO:0032732 positive regulation of interleukin-1 production(GO:0032732)
0.0 0.2 GO:0043518 negative regulation of DNA damage response, signal transduction by p53 class mediator(GO:0043518)
0.0 0.3 GO:0000395 mRNA 5'-splice site recognition(GO:0000395)
0.0 0.3 GO:0051013 microtubule severing(GO:0051013)
0.0 0.3 GO:0097345 mitochondrial outer membrane permeabilization(GO:0097345)
0.0 0.1 GO:0034154 toll-like receptor 7 signaling pathway(GO:0034154)
0.0 0.6 GO:0016926 protein desumoylation(GO:0016926)
0.0 0.3 GO:0016560 protein import into peroxisome matrix, docking(GO:0016560) protein to membrane docking(GO:0022615)
0.0 0.1 GO:0006089 lactate metabolic process(GO:0006089)
0.0 0.4 GO:0045670 regulation of osteoclast differentiation(GO:0045670)
0.0 0.7 GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000462)
0.0 0.4 GO:0042771 intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator(GO:0042771)
0.0 0.3 GO:0000186 activation of MAPKK activity(GO:0000186)
0.0 0.1 GO:0002159 desmosome assembly(GO:0002159)
0.0 0.8 GO:0050852 T cell receptor signaling pathway(GO:0050852)
0.0 0.4 GO:0021983 pituitary gland development(GO:0021983)
0.0 0.1 GO:0006857 oligopeptide transport(GO:0006857)
0.0 0.2 GO:0072332 intrinsic apoptotic signaling pathway by p53 class mediator(GO:0072332)
0.0 0.3 GO:0007631 feeding behavior(GO:0007631)
0.0 0.3 GO:0055092 cholesterol homeostasis(GO:0042632) sterol homeostasis(GO:0055092)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.5 GO:0033186 CAF-1 complex(GO:0033186)
0.1 0.3 GO:1990429 Pex17p-Pex14p docking complex(GO:1990415) peroxisomal importomer complex(GO:1990429)
0.1 0.7 GO:0001401 mitochondrial sorting and assembly machinery complex(GO:0001401)
0.1 0.3 GO:0005673 transcription factor TFIIE complex(GO:0005673)
0.0 0.2 GO:0071012 U2-type catalytic step 1 spliceosome(GO:0071006) catalytic step 1 spliceosome(GO:0071012)
0.0 0.3 GO:0031307 integral component of mitochondrial outer membrane(GO:0031307)
0.0 0.4 GO:0031011 Ino80 complex(GO:0031011) DNA helicase complex(GO:0033202)
0.0 0.7 GO:0032040 small-subunit processome(GO:0032040)
0.0 0.6 GO:0043596 nuclear replication fork(GO:0043596)
0.0 0.4 GO:0005921 gap junction(GO:0005921)
0.0 0.6 GO:0035869 ciliary transition zone(GO:0035869)
0.0 0.1 GO:0030891 VCB complex(GO:0030891)
0.0 0.4 GO:0016605 PML body(GO:0016605)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.9 GO:0009374 biotin binding(GO:0009374)
0.1 0.7 GO:0001042 RNA polymerase I core binding(GO:0001042)
0.1 0.4 GO:0000298 endopolyphosphatase activity(GO:0000298) diphosphoinositol-polyphosphate diphosphatase activity(GO:0008486) bis(5'-adenosyl)-hexaphosphatase activity(GO:0034431) bis(5'-adenosyl)-pentaphosphatase activity(GO:0034432)
0.0 0.6 GO:0016929 SUMO-specific protease activity(GO:0016929)
0.0 0.6 GO:0034062 DNA-directed RNA polymerase activity(GO:0003899) RNA polymerase activity(GO:0034062)
0.0 0.5 GO:0003887 DNA-directed DNA polymerase activity(GO:0003887)
0.0 0.2 GO:0052629 phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity(GO:0052629)
0.0 0.6 GO:0043539 protein serine/threonine kinase activator activity(GO:0043539)
0.0 0.4 GO:0022829 wide pore channel activity(GO:0022829)
0.0 0.1 GO:0042936 dipeptide transporter activity(GO:0042936) dipeptide transmembrane transporter activity(GO:0071916)
0.0 0.8 GO:0071949 FAD binding(GO:0071949)
0.0 0.3 GO:0001871 pattern binding(GO:0001871) polysaccharide binding(GO:0030247)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.7 PID MTOR 4PATHWAY mTOR signaling pathway

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS Genes involved in ABCA transporters in lipid homeostasis
0.0 0.7 REACTOME RNA POL I TRANSCRIPTION INITIATION Genes involved in RNA Polymerase I Transcription Initiation
0.0 0.6 REACTOME RNA POL I RNA POL III AND MITOCHONDRIAL TRANSCRIPTION Genes involved in RNA Polymerase I, RNA Polymerase III, and Mitochondrial Transcription