Project
PRJNA195909:zebrafish embryo and larva development
Navigation
Downloads
Results for gsx1
Z-value: 1.24
Motif logo
Transcription factors associated with gsx1
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| gsx1 | dr11_v1_chr5_-_67911111_67911111 | 0.87 | 2.6e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr25_+_31276842 Show fit | 4.30 |
ENSDART00000187238
|
troponin I type 2a (skeletal, fast), tandem duplicate 4 |
|
| chr7_+_20503344 Show fit | 3.03 |
ENSDART00000157699
|
si:dkey-19b23.12 |
|
| chr15_+_23799461 Show fit | 3.01 |
ENSDART00000154885
|
si:ch211-167j9.4 |
|
| chr21_+_28445052 Show fit | 2.71 |
ENSDART00000077871
|
phosphorylase, glycogen, muscle A |
|
| chr3_+_46635527 Show fit | 2.40 |
ENSDART00000153971
|
si:dkey-248g21.1 |
|
| chr8_+_21353878 Show fit | 2.21 |
ENSDART00000056420
|
aminolevulinate, delta-, synthase 2 |
|
| chr25_+_14507567 Show fit | 2.17 |
ENSDART00000015681
|
developing brain homeobox 1b |
|
| chr19_-_31402429 Show fit | 1.98 |
ENSDART00000137292
|
transmembrane protein 106Bb |
|
| chr9_-_21918963 Show fit | 1.97 |
ENSDART00000090782
|
LIM domain 7a |
|
| chr14_+_45406299 Show fit | 1.73 |
ENSDART00000173142
ENSDART00000112377 |
microtubule-associated protein 1 light chain 3 gamma, like |
Network of associatons between targets according to the STRING database.
First level regulatory network of gsx1
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 4.8 | GO:0003009 | skeletal muscle contraction(GO:0003009) |
| 0.2 | 3.5 | GO:0042541 | hemoglobin biosynthetic process(GO:0042541) |
| 0.9 | 2.7 | GO:0052575 | carbohydrate localization(GO:0052575) carbohydrate storage(GO:0052576) |
| 0.0 | 2.2 | GO:0021515 | cell differentiation in spinal cord(GO:0021515) |
| 0.1 | 2.0 | GO:0032418 | lysosome localization(GO:0032418) |
| 0.1 | 1.9 | GO:0032525 | somite rostral/caudal axis specification(GO:0032525) |
| 0.1 | 1.7 | GO:0043562 | cellular response to nitrogen starvation(GO:0006995) cellular response to nitrogen levels(GO:0043562) |
| 0.3 | 1.6 | GO:0010873 | regulation of cholesterol esterification(GO:0010872) positive regulation of cholesterol esterification(GO:0010873) |
| 0.3 | 1.6 | GO:0042362 | fat-soluble vitamin biosynthetic process(GO:0042362) |
| 0.0 | 1.6 | GO:0007586 | digestion(GO:0007586) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 4.8 | GO:0005861 | troponin complex(GO:0005861) |
| 0.0 | 2.9 | GO:0005759 | mitochondrial matrix(GO:0005759) |
| 0.0 | 2.2 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.1 | 1.6 | GO:0042627 | chylomicron(GO:0042627) |
| 0.1 | 1.4 | GO:0031838 | haptoglobin-hemoglobin complex(GO:0031838) |
| 0.0 | 1.4 | GO:0005604 | basement membrane(GO:0005604) |
| 0.1 | 1.3 | GO:0019773 | proteasome core complex, alpha-subunit complex(GO:0019773) |
| 0.2 | 1.2 | GO:0005853 | eukaryotic translation elongation factor 1 complex(GO:0005853) |
| 0.1 | 1.2 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 1.2 | GO:0098978 | glutamatergic synapse(GO:0098978) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 2.7 | GO:0008184 | phosphorylase activity(GO:0004645) glycogen phosphorylase activity(GO:0008184) |
| 0.0 | 2.7 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 0.7 | 2.2 | GO:0016748 | succinyltransferase activity(GO:0016748) |
| 0.0 | 1.9 | GO:0004222 | metalloendopeptidase activity(GO:0004222) |
| 0.3 | 1.6 | GO:0060228 | phosphatidylcholine-sterol O-acyltransferase activator activity(GO:0060228) |
| 0.0 | 1.6 | GO:0005184 | neuropeptide hormone activity(GO:0005184) |
| 0.0 | 1.6 | GO:0031625 | ubiquitin protein ligase binding(GO:0031625) |
| 0.1 | 1.4 | GO:0031720 | haptoglobin binding(GO:0031720) |
| 0.0 | 1.3 | GO:0008028 | monocarboxylic acid transmembrane transporter activity(GO:0008028) |
| 0.1 | 1.2 | GO:0001591 | dopamine neurotransmitter receptor activity, coupled via Gi/Go(GO:0001591) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.6 | PID CONE PATHWAY | Visual signal transduction: Cones |
| 0.0 | 1.6 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
| 0.0 | 1.2 | PID BMP PATHWAY | BMP receptor signaling |
| 0.0 | 1.2 | PID AJDISS 2PATHWAY | Posttranslational regulation of adherens junction stability and dissassembly |
| 0.1 | 1.1 | PID INTEGRIN A4B1 PATHWAY | Alpha4 beta1 integrin signaling events |
| 0.1 | 0.5 | SA FAS SIGNALING | The TNF-type receptor Fas induces apoptosis on ligand binding. |
| 0.0 | 0.5 | PID WNT SIGNALING PATHWAY | Wnt signaling network |
| 0.0 | 0.5 | PID ILK PATHWAY | Integrin-linked kinase signaling |
| 0.0 | 0.4 | PID INTEGRIN5 PATHWAY | Beta5 beta6 beta7 and beta8 integrin cell surface interactions |
| 0.0 | 0.2 | PID IL12 STAT4 PATHWAY | IL12 signaling mediated by STAT4 |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 2.2 | REACTOME METABOLISM OF PORPHYRINS | Genes involved in Metabolism of porphyrins |
| 0.0 | 2.2 | REACTOME PEPTIDE CHAIN ELONGATION | Genes involved in Peptide chain elongation |
| 0.1 | 1.5 | REACTOME P130CAS LINKAGE TO MAPK SIGNALING FOR INTEGRINS | Genes involved in p130Cas linkage to MAPK signaling for integrins |
| 0.0 | 1.3 | REACTOME CROSS PRESENTATION OF SOLUBLE EXOGENOUS ANTIGENS ENDOSOMES | Genes involved in Cross-presentation of soluble exogenous antigens (endosomes) |
| 0.0 | 1.2 | REACTOME NETRIN1 SIGNALING | Genes involved in Netrin-1 signaling |
| 0.0 | 0.7 | REACTOME RESPIRATORY ELECTRON TRANSPORT | Genes involved in Respiratory electron transport |
| 0.1 | 0.5 | REACTOME TRANSPORT OF ORGANIC ANIONS | Genes involved in Transport of organic anions |
| 0.1 | 0.5 | REACTOME SEMA3A PAK DEPENDENT AXON REPULSION | Genes involved in Sema3A PAK dependent Axon repulsion |
| 0.0 | 0.5 | REACTOME STRIATED MUSCLE CONTRACTION | Genes involved in Striated Muscle Contraction |
| 0.0 | 0.3 | REACTOME MEMBRANE BINDING AND TARGETTING OF GAG PROTEINS | Genes involved in Membrane binding and targetting of GAG proteins |