Project
PRJNA195909:zebrafish embryo and larva development
Navigation
Downloads
Results for foxd3
Z-value: 2.87
Motif logo
Transcription factors associated with foxd3
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| foxd3 | dr11_v1_chr6_-_32093830_32093830 | -0.78 | 1.2e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr17_-_4245902 Show fit | 5.21 |
ENSDART00000151851
|
growth differentiation factor 3 |
|
| chr22_+_24559947 Show fit | 4.77 |
ENSDART00000169847
|
WD repeat domain 47b |
|
| chr5_+_57924611 Show fit | 4.53 |
ENSDART00000050949
|
B-cell translocation gene 4 |
|
| chr5_+_36768674 Show fit | 4.48 |
ENSDART00000146854
|
MAP/microtubule affinity-regulating kinase 4a |
|
| chr15_+_38299385 Show fit | 4.39 |
ENSDART00000142403
|
si:dkey-24p1.6 |
|
| chr22_-_10591876 Show fit | 4.32 |
ENSDART00000105846
|
si:dkey-42i9.8 |
|
| chr17_+_14965570 Show fit | 4.07 |
ENSDART00000066604
|
G protein-coupled receptor 137c |
|
| chr1_-_33647138 Show fit | 3.95 |
ENSDART00000142111
ENSDART00000015547 |
claudin g |
|
| chr12_-_22238004 Show fit | 3.69 |
ENSDART00000038310
|
ORMDL sphingolipid biosynthesis regulator 3 |
|
| chr15_+_38299563 Show fit | 3.57 |
ENSDART00000099375
|
si:dkey-24p1.6 |
Network of associatons between targets according to the STRING database.
First level regulatory network of foxd3
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 9.5 | GO:0016567 | protein ubiquitination(GO:0016567) |
| 0.1 | 7.2 | GO:0061640 | cytoskeleton-dependent cytokinesis(GO:0061640) |
| 1.3 | 6.7 | GO:0016338 | calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules(GO:0016338) |
| 0.1 | 5.8 | GO:0031497 | chromatin assembly(GO:0031497) |
| 0.1 | 5.7 | GO:0090630 | activation of GTPase activity(GO:0090630) |
| 0.0 | 5.4 | GO:0006338 | chromatin remodeling(GO:0006338) |
| 1.0 | 5.2 | GO:1900145 | nodal signaling pathway involved in determination of left/right asymmetry(GO:0038107) regulation of nodal signaling pathway involved in determination of left/right asymmetry(GO:1900145) |
| 0.1 | 5.0 | GO:0030433 | ER-associated ubiquitin-dependent protein catabolic process(GO:0030433) |
| 0.0 | 4.9 | GO:0072659 | protein localization to plasma membrane(GO:0072659) protein localization to cell periphery(GO:1990778) |
| 0.8 | 4.8 | GO:0060282 | positive regulation of oocyte development(GO:0060282) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 11.3 | GO:0005923 | bicellular tight junction(GO:0005923) occluding junction(GO:0070160) |
| 0.0 | 10.6 | GO:0005794 | Golgi apparatus(GO:0005794) |
| 0.1 | 9.7 | GO:0016604 | nuclear body(GO:0016604) |
| 0.0 | 8.7 | GO:0005730 | nucleolus(GO:0005730) |
| 0.0 | 8.5 | GO:0005813 | centrosome(GO:0005813) |
| 0.1 | 8.1 | GO:0005814 | centriole(GO:0005814) |
| 0.0 | 7.8 | GO:0005764 | lysosome(GO:0005764) |
| 0.1 | 6.8 | GO:0031901 | early endosome membrane(GO:0031901) |
| 0.1 | 6.3 | GO:0030496 | midbody(GO:0030496) |
| 0.3 | 5.7 | GO:0071144 | SMAD2-SMAD3 protein complex(GO:0071144) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 15.5 | GO:0005096 | GTPase activator activity(GO:0005096) |
| 0.1 | 12.0 | GO:0042393 | histone binding(GO:0042393) |
| 0.0 | 11.4 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.0 | 10.0 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.0 | 9.3 | GO:0042802 | identical protein binding(GO:0042802) |
| 0.0 | 8.4 | GO:0050839 | cell adhesion molecule binding(GO:0050839) |
| 0.0 | 7.0 | GO:0005085 | guanyl-nucleotide exchange factor activity(GO:0005085) |
| 0.0 | 6.1 | GO:0035091 | phosphatidylinositol binding(GO:0035091) |
| 0.3 | 5.7 | GO:0070411 | I-SMAD binding(GO:0070411) |
| 0.2 | 5.5 | GO:0015248 | sterol transporter activity(GO:0015248) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 5.1 | PID FANCONI PATHWAY | Fanconi anemia pathway |
| 0.3 | 4.9 | PID SMAD2 3PATHWAY | Regulation of cytoplasmic and nuclear SMAD2/3 signaling |
| 0.1 | 4.8 | PID AURORA B PATHWAY | Aurora B signaling |
| 0.1 | 4.8 | PID HDAC CLASSI PATHWAY | Signaling events mediated by HDAC Class I |
| 0.1 | 4.1 | PID FAK PATHWAY | Signaling events mediated by focal adhesion kinase |
| 0.1 | 4.1 | PID FOXM1 PATHWAY | FOXM1 transcription factor network |
| 0.1 | 3.9 | PID ERBB1 INTERNALIZATION PATHWAY | Internalization of ErbB1 |
| 0.1 | 3.8 | ST JNK MAPK PATHWAY | JNK MAPK Pathway |
| 0.2 | 3.6 | PID BETA CATENIN DEG PATHWAY | Degradation of beta catenin |
| 0.1 | 3.6 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 8.9 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
| 0.5 | 4.9 | REACTOME SIGNALING BY NODAL | Genes involved in Signaling by NODAL |
| 0.2 | 4.0 | REACTOME KINESINS | Genes involved in Kinesins |
| 0.2 | 3.8 | REACTOME PROCESSING OF INTRONLESS PRE MRNAS | Genes involved in Processing of Intronless Pre-mRNAs |
| 0.2 | 3.5 | REACTOME DEADENYLATION OF MRNA | Genes involved in Deadenylation of mRNA |
| 0.1 | 3.5 | REACTOME ACTIVATION OF CHAPERONE GENES BY XBP1S | Genes involved in Activation of Chaperone Genes by XBP1(S) |
| 0.3 | 3.4 | REACTOME GLYCOGEN BREAKDOWN GLYCOGENOLYSIS | Genes involved in Glycogen breakdown (glycogenolysis) |
| 0.0 | 3.1 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
| 0.1 | 3.0 | REACTOME ASSOCIATION OF TRIC CCT WITH TARGET PROTEINS DURING BIOSYNTHESIS | Genes involved in Association of TriC/CCT with target proteins during biosynthesis |
| 0.1 | 2.6 | REACTOME ENDOSOMAL SORTING COMPLEX REQUIRED FOR TRANSPORT ESCRT | Genes involved in Endosomal Sorting Complex Required For Transport (ESCRT) |