PRJNA195909:zebrafish embryo and larva development
Gene Symbol | Gene ID | Gene Info |
---|---|---|
ENSDARG00000019459 | E74-like factor 2a (ets domain transcription factor) | |
ENSDARG00000079626 | E74-like factor 2b (ets domain transcription factor) | |
ENSDARG00000117064 | E74-like factor 2b (ets domain transcription factor) |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
elf2a | dr11_v1_chr14_-_46070802_46070802 | -0.80 | 9.9e-03 | Click! |
elf2b | dr11_v1_chr1_-_13989643_13989643 | 0.57 | 1.1e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr14_-_26482096 Show fit | 4.53 |
ENSDART00000187280
|
SMAD family member 5 |
|
chr21_+_20396858 Show fit | 4.30 |
ENSDART00000003299
ENSDART00000146615 |
zgc:103482 |
|
chr20_+_46572550 Show fit | 3.89 |
ENSDART00000139051
ENSDART00000161320 |
basic leucine zipper transcription factor, ATF-like |
|
chr2_+_27855346 Show fit | 3.81 |
ENSDART00000175159
ENSDART00000192645 |
bucky ball |
|
chr14_-_46198373 Show fit | 3.50 |
ENSDART00000031640
ENSDART00000132966 |
zgc:113425 |
|
chr16_+_11779534 Show fit | 3.26 |
ENSDART00000133497
|
si:dkey-250k15.4 |
|
chr1_-_34447515 Show fit | 3.26 |
ENSDART00000143048
|
LIM domain 7b |
|
chr8_+_52442622 Show fit | 3.21 |
ENSDART00000012758
|
zgc:77112 |
|
chr2_-_32594777 Show fit | 3.05 |
ENSDART00000134125
|
Fas-activated serine/threonine kinase |
|
chr23_-_27050083 Show fit | 3.03 |
ENSDART00000142324
ENSDART00000133249 ENSDART00000138751 ENSDART00000128718 |
zgc:66440 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 13.9 | GO:0006402 | mRNA catabolic process(GO:0006402) |
0.1 | 10.5 | GO:0030433 | ER-associated ubiquitin-dependent protein catabolic process(GO:0030433) |
0.0 | 8.6 | GO:0016567 | protein ubiquitination(GO:0016567) |
0.8 | 7.8 | GO:0045948 | positive regulation of translational initiation(GO:0045948) |
0.0 | 7.8 | GO:0000377 | RNA splicing, via transesterification reactions(GO:0000375) RNA splicing, via transesterification reactions with bulged adenosine as nucleophile(GO:0000377) mRNA splicing, via spliceosome(GO:0000398) |
0.3 | 6.8 | GO:0007032 | endosome organization(GO:0007032) |
1.1 | 6.5 | GO:0060832 | oocyte animal/vegetal axis specification(GO:0060832) |
0.1 | 6.0 | GO:0031098 | stress-activated protein kinase signaling cascade(GO:0031098) |
0.1 | 5.4 | GO:0099518 | vesicle cytoskeletal trafficking(GO:0099518) |
0.3 | 5.3 | GO:2000223 | regulation of BMP signaling pathway involved in heart jogging(GO:2000223) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 14.6 | GO:0005654 | nucleoplasm(GO:0005654) |
0.1 | 9.8 | GO:0005802 | trans-Golgi network(GO:0005802) |
0.0 | 8.8 | GO:0005794 | Golgi apparatus(GO:0005794) |
0.1 | 8.1 | GO:0016607 | nuclear speck(GO:0016607) |
0.1 | 7.7 | GO:0031227 | intrinsic component of endoplasmic reticulum membrane(GO:0031227) |
0.1 | 7.0 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
0.8 | 6.5 | GO:0032019 | mitochondrial cloud(GO:0032019) |
0.1 | 5.7 | GO:0016605 | PML body(GO:0016605) |
0.1 | 5.7 | GO:0005769 | early endosome(GO:0005769) |
0.3 | 5.6 | GO:0000164 | protein phosphatase type 1 complex(GO:0000164) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 24.1 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
0.1 | 13.4 | GO:0035091 | phosphatidylinositol binding(GO:0035091) |
0.1 | 8.7 | GO:0003724 | RNA helicase activity(GO:0003724) |
0.1 | 7.9 | GO:0001227 | transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001227) |
0.1 | 7.2 | GO:0101005 | thiol-dependent ubiquitin-specific protease activity(GO:0004843) thiol-dependent ubiquitinyl hydrolase activity(GO:0036459) ubiquitinyl hydrolase activity(GO:0101005) |
0.0 | 6.6 | GO:0030695 | GTPase regulator activity(GO:0030695) |
1.6 | 6.4 | GO:0004534 | 5'-3' exoribonuclease activity(GO:0004534) |
0.1 | 5.7 | GO:0061631 | ubiquitin conjugating enzyme activity(GO:0061631) |
0.4 | 5.6 | GO:2001069 | glycogen binding(GO:2001069) |
0.3 | 5.2 | GO:0004535 | poly(A)-specific ribonuclease activity(GO:0004535) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 7.7 | PID HIV NEF PATHWAY | HIV-1 Nef: Negative effector of Fas and TNF-alpha |
0.2 | 6.5 | SIG PIP3 SIGNALING IN B LYMPHOCYTES | Genes related to PIP3 signaling in B lymphocytes |
0.1 | 5.5 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
0.1 | 5.0 | PID FOXO PATHWAY | FoxO family signaling |
0.2 | 3.4 | PID ALK2 PATHWAY | ALK2 signaling events |
0.1 | 3.4 | PID DNA PK PATHWAY | DNA-PK pathway in nonhomologous end joining |
0.2 | 3.2 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
0.1 | 3.2 | PID AURORA B PATHWAY | Aurora B signaling |
0.4 | 3.0 | ST IL 13 PATHWAY | Interleukin 13 (IL-13) Pathway |
0.3 | 2.7 | PID TCR JNK PATHWAY | JNK signaling in the CD4+ TCR pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 6.9 | REACTOME SYNTHESIS OF PIPS AT THE EARLY ENDOSOME MEMBRANE | Genes involved in Synthesis of PIPs at the early endosome membrane |
0.1 | 5.2 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
0.2 | 4.6 | REACTOME PHOSPHORYLATION OF THE APC C | Genes involved in Phosphorylation of the APC/C |
0.3 | 4.5 | REACTOME SIGNALING BY BMP | Genes involved in Signaling by BMP |
0.2 | 4.4 | REACTOME INTERFERON GAMMA SIGNALING | Genes involved in Interferon gamma signaling |
0.1 | 4.2 | REACTOME ION TRANSPORT BY P TYPE ATPASES | Genes involved in Ion transport by P-type ATPases |
0.2 | 4.1 | REACTOME RNA POL III TRANSCRIPTION INITIATION FROM TYPE 3 PROMOTER | Genes involved in RNA Polymerase III Transcription Initiation From Type 3 Promoter |
0.1 | 4.1 | REACTOME ASSOCIATION OF TRIC CCT WITH TARGET PROTEINS DURING BIOSYNTHESIS | Genes involved in Association of TriC/CCT with target proteins during biosynthesis |
0.1 | 3.8 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |
0.1 | 3.7 | REACTOME SYNTHESIS OF PIPS AT THE PLASMA MEMBRANE | Genes involved in Synthesis of PIPs at the plasma membrane |