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PRJNA195909:zebrafish embryo and larva development

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Results for egr4

Z-value: 0.37

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Transcription factors associated with egr4

Gene Symbol Gene ID Gene Info
egr4
ENSDARG00000077799 early growth response 4

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
egr4dr11_v1_chr23_+_45579497_455794970.665.4e-02Click!

Activity profile of egr4 motif

Sorted Z-values of egr4 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr13_-_9886579 0.54 ENSDART00000101926
si:ch211-117n7.7
si:ch211-117n7.7
chr22_+_20720808 0.49 ENSDART00000171321
si:dkey-211f22.5
si:dkey-211f22.5
chr2_-_31301929 0.36 ENSDART00000191992
ENSDART00000190723
adcyap1b
adenylate cyclase activating polypeptide 1b
chr23_-_524780 0.33 ENSDART00000055139
col9a3
collagen, type IX, alpha 3
chr6_+_42819337 0.31 ENSDART00000046498
sema3fa
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fa
chr22_-_16180849 0.31 ENSDART00000090390
vcam1b
vascular cell adhesion molecule 1b
chr9_+_21146862 0.28 ENSDART00000136365
hao2
hydroxyacid oxidase 2 (long chain)
chr3_+_23737795 0.26 ENSDART00000182247
hoxb3a
homeobox B3a
chr24_+_24831727 0.26 ENSDART00000080969
trim55b
tripartite motif containing 55b
chr10_+_19554604 0.25 ENSDART00000063806
atp6v1b2
ATPase H+ transporting V1 subunit B2
chr5_+_64739762 0.25 ENSDART00000161112
ENSDART00000135610
ENSDART00000002908
olfm1a
olfactomedin 1a
chr22_-_34872533 0.24 ENSDART00000167176
slit1b
slit homolog 1b (Drosophila)
chr2_-_48753873 0.24 ENSDART00000189556
CABZ01044731.1

chr6_+_42818963 0.23 ENSDART00000184833
sema3fa
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fa
chr17_-_10025234 0.22 ENSDART00000008355
cfl2
cofilin 2 (muscle)
chr21_-_26114886 0.22 ENSDART00000139320
nipal4
NIPA-like domain containing 4
chr14_-_21218891 0.22 ENSDART00000158294
ppp2r2cb
protein phosphatase 2, regulatory subunit B, gamma b
chr24_-_24146875 0.21 ENSDART00000173052
map7d2b
MAP7 domain containing 2b
chr10_-_15919839 0.21 ENSDART00000065032
pip5k1ba
phosphatidylinositol-4-phosphate 5-kinase, type I, beta a
chr25_+_13406069 0.21 ENSDART00000010495
znrf1
zinc and ring finger 1
chr14_+_36220479 0.20 ENSDART00000148319
pitx2
paired-like homeodomain 2
chr25_+_30298377 0.19 ENSDART00000153622
C11orf96
chromosome 11 open reading frame 96
chr6_+_40661703 0.17 ENSDART00000142492
eno1b
enolase 1b, (alpha)
chr16_-_54405976 0.16 ENSDART00000055395
osr2
odd-skipped related transciption factor 2
chr8_+_22438398 0.16 ENSDART00000135145
zgc:153759
zgc:153759
chr19_+_31061718 0.15 ENSDART00000145971
sostdc1b
sclerostin domain containing 1b
chr12_+_14079097 0.15 ENSDART00000078033
si:ch211-217a12.1
si:ch211-217a12.1
chr23_+_40460333 0.14 ENSDART00000184658
soga3b
SOGA family member 3b
chr5_-_14390445 0.14 ENSDART00000026120
ap3m2
adaptor-related protein complex 3, mu 2 subunit
chr22_-_6991514 0.14 ENSDART00000148233
fgfr1bl
fibroblast growth factor receptor 1b, like
chr17_+_15297398 0.14 ENSDART00000156574
si:ch211-270g19.5
si:ch211-270g19.5
chr23_+_804119 0.12 ENSDART00000148163
frmd4bb
FERM domain containing 4Bb
chr11_-_277599 0.11 ENSDART00000187109
npffl
neuropeptide FF-amide peptide precursor like
chr18_-_45617146 0.11 ENSDART00000146543
wt1b
wilms tumor 1b
chr23_+_16910071 0.10 ENSDART00000104793
si:dkey-147f3.8
si:dkey-147f3.8
chr7_-_2039060 0.10 ENSDART00000173879
si:cabz01007794.1
si:cabz01007794.1
chr12_+_5215795 0.10 ENSDART00000170270
SLC35G1
si:ch211-197g18.2
chr5_-_2689753 0.10 ENSDART00000172699
gng10
guanine nucleotide binding protein (G protein), gamma 10
chr1_-_7917062 0.09 ENSDART00000177068
mmd2b
monocyte to macrophage differentiation-associated 2b
chr7_-_44963154 0.09 ENSDART00000073735
rrad
Ras-related associated with diabetes
chr14_+_40641350 0.09 ENSDART00000074506
tnmd
tenomodulin
chr19_+_342094 0.09 ENSDART00000151013
ENSDART00000187622
ensaa
endosulfine alpha a
chr5_-_21030934 0.09 ENSDART00000133461
ENSDART00000098667
camk2b1
calcium/calmodulin-dependent protein kinase (CaM kinase) II beta 1
chr24_+_26895748 0.08 ENSDART00000089351
nceh1b.1
neutral cholesterol ester hydrolase 1b, tandem duplicate 1
chr14_+_29769336 0.08 ENSDART00000105898
si:dkey-34l15.1
si:dkey-34l15.1
chr3_-_5228137 0.07 ENSDART00000137105
myh9b
myosin, heavy chain 9b, non-muscle
chr23_+_41799748 0.07 ENSDART00000144257
pdyn
prodynorphin
chr21_-_43398122 0.07 ENSDART00000050533
ccni2
cyclin I family, member 2
chr6_-_23117348 0.07 ENSDART00000154941
ENSDART00000154252
ten1
TEN1 CST complex subunit
chr21_+_33172526 0.07 ENSDART00000183532
arl3l1
ADP-ribosylation factor-like 3, like 1
chr11_-_236766 0.07 ENSDART00000163978
dusp7
dual specificity phosphatase 7
chr3_+_24537023 0.06 ENSDART00000077702
sp100.1
SP110 nuclear body protein, tandem duplicate 1
chr11_-_236984 0.06 ENSDART00000170778
dusp7
dual specificity phosphatase 7
chr2_+_38924975 0.06 ENSDART00000109219
rem2
RAS (RAD and GEM)-like GTP binding 2
chr3_+_16722014 0.06 ENSDART00000008711
gys1
glycogen synthase 1 (muscle)
chr23_+_39606108 0.05 ENSDART00000109464
g0s2
G0/G1 switch 2
chr11_+_14049131 0.05 ENSDART00000172471
grin3bb
glutamate receptor, ionotropic, N-methyl-D-aspartate 3Bb
chr1_-_10473630 0.05 ENSDART00000040116
tnrc5
trinucleotide repeat containing 5
chr18_+_8901846 0.05 ENSDART00000132109
ENSDART00000144247
si:dkey-5i3.5
si:dkey-5i3.5
chr5_+_42136359 0.05 ENSDART00000083731
trpv1
transient receptor potential cation channel, subfamily V, member 1
chr13_-_31397987 0.05 ENSDART00000008287
pgam1a
phosphoglycerate mutase 1a
chr22_+_6757741 0.05 ENSDART00000140815
CT583625.1

chr23_+_41800052 0.04 ENSDART00000141484
pdyn
prodynorphin
chr8_-_52859301 0.04 ENSDART00000162004
nr5a1a
nuclear receptor subfamily 5, group A, member 1a
chr4_+_70556298 0.04 ENSDART00000170985
si:dkey-11d20.1
si:dkey-11d20.1
chr17_+_48164536 0.04 ENSDART00000161750
ENSDART00000156923
plekhd1
pleckstrin homology domain containing, family D (with coiled-coil domains) member 1
chr11_+_12719944 0.03 ENSDART00000054837
ENSDART00000144954
ap1s2
adaptor-related protein complex 1, sigma 2 subunit
chr23_+_9067131 0.03 ENSDART00000144533
ccm2l
cerebral cavernous malformation 2-like
chr2_+_51194657 0.03 ENSDART00000161381
lrrc24
leucine rich repeat containing 24
chr5_-_49012569 0.03 ENSDART00000184690
si:dkey-172m14.2
si:dkey-172m14.2
chr23_+_44049509 0.03 ENSDART00000102003
txk
TXK tyrosine kinase
chr11_+_12720171 0.02 ENSDART00000135761
ENSDART00000122812
ap1s2
adaptor-related protein complex 1, sigma 2 subunit
chr21_-_43398457 0.02 ENSDART00000166530
ccni2
cyclin I family, member 2
chr12_-_23129453 0.02 ENSDART00000077453
armc4
armadillo repeat containing 4
chr17_-_15657029 0.01 ENSDART00000153925
fut9a
fucosyltransferase 9a
chr5_+_51443009 0.01 ENSDART00000083350
rasgrf2b
Ras protein-specific guanine nucleotide-releasing factor 2b
chr16_-_40508624 0.01 ENSDART00000075718
ndufaf6
NADH dehydrogenase (ubiquinone) complex I, assembly factor 6
chr2_+_47906240 0.01 ENSDART00000122206
ftr23
finTRIM family, member 23
chr17_+_20639180 0.00 ENSDART00000063624
npy4r
neuropeptide Y receptor Y4
chr22_-_20720427 0.00 ENSDART00000105532
oaz1a
ornithine decarboxylase antizyme 1a
chr11_-_165288 0.00 ENSDART00000108703
ENSDART00000173151
tegt
testis enhanced gene transcript (BAX inhibitor 1)

Network of associatons between targets according to the STRING database.

First level regulatory network of egr4

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.5 GO:0052651 phosphatidylserine catabolic process(GO:0006660) monoacylglycerol metabolic process(GO:0046462) monoacylglycerol catabolic process(GO:0052651)
0.1 0.2 GO:0030043 actin filament fragmentation(GO:0030043)
0.0 0.2 GO:0061072 iris morphogenesis(GO:0061072)
0.0 0.2 GO:1902868 positive regulation of neural retina development(GO:0061075) positive regulation of retina development in camera-type eye(GO:1902868)
0.0 0.2 GO:0070262 peptidyl-serine dephosphorylation(GO:0070262)
0.0 0.2 GO:0032889 regulation of vacuole fusion, non-autophagic(GO:0032889)
0.0 0.1 GO:1901842 regulation of high voltage-gated calcium channel activity(GO:1901841) negative regulation of high voltage-gated calcium channel activity(GO:1901842)
0.0 0.1 GO:0001886 endothelial cell morphogenesis(GO:0001886)
0.0 0.1 GO:1904357 negative regulation of telomere maintenance via telomerase(GO:0032211) negative regulation of telomere maintenance via telomere lengthening(GO:1904357)
0.0 0.2 GO:2000403 positive regulation of lymphocyte migration(GO:2000403) positive regulation of T cell migration(GO:2000406)
0.0 0.1 GO:0070650 actin filament bundle distribution(GO:0070650)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:1990879 CST complex(GO:1990879)
0.0 0.2 GO:0000015 phosphopyruvate hydratase complex(GO:0000015)
0.0 0.3 GO:0033180 proton-transporting V-type ATPase, V1 domain(GO:0033180)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0016521 pituitary adenylate cyclase activating polypeptide activity(GO:0016521)
0.0 0.5 GO:0047372 acylglycerol lipase activity(GO:0047372)
0.0 0.5 GO:0038191 neuropilin binding(GO:0038191)
0.0 0.1 GO:0042030 ATPase inhibitor activity(GO:0042030)
0.0 0.2 GO:0004634 phosphopyruvate hydratase activity(GO:0004634)
0.0 0.1 GO:0036122 BMP binding(GO:0036122)
0.0 0.1 GO:0010521 telomerase inhibitor activity(GO:0010521)
0.0 0.1 GO:0004373 glycogen (starch) synthase activity(GO:0004373)
0.0 0.3 GO:0010181 FMN binding(GO:0010181)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 REACTOME TRANSFERRIN ENDOCYTOSIS AND RECYCLING Genes involved in Transferrin endocytosis and recycling
0.0 0.1 REACTOME ERKS ARE INACTIVATED Genes involved in ERKs are inactivated