PRJNA195909:zebrafish embryo and larva development

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
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Gene Symbol	Gene ID	Gene Info
dlx5a Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000042296	distal-less homeobox 5a

Gene	Promoter	Pearson corr. coef.	P-value	Plot
dlx5a	dr11_v1_chr19_-_41472228_41472228	-0.82	7.4e-03	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr10_+_19596214 Show fit	0.89	ENSDART00000183110	CABZ01059626.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr2_+_6253246 Show fit	0.75	ENSDART00000058256 ENSDART00000076700	zp3b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zona pellucida glycoprotein 3b
chr4_+_306036 Show fit	0.55	ENSDART00000103659	msgn1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	mesogenin 1
chr24_+_1023839 Show fit	0.52	ENSDART00000082526	zgc:111976 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:111976
chr11_-_44801968 Show fit	0.52	ENSDART00000161846	map1lc3c Links NCBI UniProt ZFIN ENSEMBL Google Show fit	microtubule-associated protein 1 light chain 3 gamma
chr10_-_35149513 Show fit	0.43	ENSDART00000063434 ENSDART00000131291	ripk4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	receptor-interacting serine-threonine kinase 4
chr6_-_43283122 Show fit	0.40	ENSDART00000186022	frmd4ba Links NCBI UniProt ZFIN ENSEMBL Google Show fit	FERM domain containing 4Ba
chr13_-_33227411 Show fit	0.30	ENSDART00000057386	golga5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	golgin A5
chr17_+_43867889 Show fit	0.30	ENSDART00000132673 ENSDART00000167214	zgc:66313 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:66313
chr23_-_31913069 Show fit	0.30	ENSDART00000135526	mtfr2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	mitochondrial fission regulator 2
chr17_+_43863708 Show fit	0.30	ENSDART00000133874 ENSDART00000140316 ENSDART00000142929 ENSDART00000148090	zgc:66313 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:66313
chr16_-_42056137 Show fit	0.29	ENSDART00000102798	zp3d.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zona pellucida glycoprotein 3d tandem duplicate 2
chr20_-_14114078 Show fit	0.29	ENSDART00000168434 ENSDART00000104032	si:ch211-223m11.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-223m11.2
chr2_-_21819421 Show fit	0.28	ENSDART00000121586	chd7 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	chromodomain helicase DNA binding protein 7
chr14_+_11290828 Show fit	0.28	ENSDART00000184078	rlim Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ring finger protein, LIM domain interacting
chr20_+_46513651 Show fit	0.24	ENSDART00000152977	zc3h14 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zinc finger CCCH-type containing 14
chr11_+_31864921 Show fit	0.24	ENSDART00000180252	diaph3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	diaphanous-related formin 3
chr6_+_23026714 Show fit	0.23	ENSDART00000124948	srp68 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	signal recognition particle 68
chr8_-_39822917 Show fit	0.22	ENSDART00000067843	zgc:162025 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:162025
chr2_-_2451181 Show fit	0.22	ENSDART00000101033	pth1ra Links NCBI UniProt ZFIN ENSEMBL Google Show fit	parathyroid hormone 1 receptor a
chr16_+_35661771 Show fit	0.22	ENSDART00000161393	map7d1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	MAP7 domain containing 1a
chr3_-_23643751 Show fit	0.21	ENSDART00000078425 ENSDART00000140264	eve1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	even-skipped-like1
chr17_+_49500820 Show fit	0.21	ENSDART00000170306	AREL1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	apoptosis resistant E3 ubiquitin protein ligase 1
chr23_-_31913231 Show fit	0.21	ENSDART00000146852 ENSDART00000085054	mtfr2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	mitochondrial fission regulator 2
chr7_-_51368681 Show fit	0.20	ENSDART00000146385	arhgap36 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Rho GTPase activating protein 36
chr22_-_11517377 Show fit	0.19	ENSDART00000193885	slc26a11 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	solute carrier family 26 (anion exchanger), member 11
chr17_-_43863700 Show fit	0.19	ENSDART00000157530	ahsa1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	AHA1, activator of heat shock protein ATPase homolog 1b
chr15_+_29140126 Show fit	0.19	ENSDART00000060034	zgc:113149 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:113149
chr6_-_40922971 Show fit	0.18	ENSDART00000155363	sfi1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	SFI1 centrin binding protein
chr16_+_35661331 Show fit	0.17	ENSDART00000161725	map7d1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	MAP7 domain containing 1a
chr16_+_42471455 Show fit	0.17	ENSDART00000166640	si:ch211-215k15.5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-215k15.5
chr20_+_14114258 Show fit	0.17	ENSDART00000044937	kcns3b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3b
chr19_-_27336092 Show fit	0.16	ENSDART00000176885	gtf2h4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	general transcription factor IIH, polypeptide 4
chr7_-_12464412 Show fit	0.15	ENSDART00000178723	adamtsl3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ADAMTS-like 3
chr3_+_32832538 Show fit	0.14	ENSDART00000139410	cd2bp2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	CD2 (cytoplasmic tail) binding protein 2
chr23_+_34990693 Show fit	0.14	ENSDART00000013449	CHST13 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-236h17.3
chr1_+_40199074 Show fit	0.13	ENSDART00000179679 ENSDART00000136849	si:ch211-113e8.5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-113e8.5
chr16_+_28994709 Show fit	0.13	ENSDART00000088023	gon4l Links NCBI UniProt ZFIN ENSEMBL Google Show fit	gon-4-like (C. elegans)
chr1_-_53277413 Show fit	0.13	ENSDART00000150579	znf330 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zinc finger protein 330
chr10_+_20392083 Show fit	0.13	ENSDART00000166867	r3hcc1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	R3H domain and coiled-coil containing 1
chr10_-_13343831 Show fit	0.12	ENSDART00000135941	il11ra Links NCBI UniProt ZFIN ENSEMBL Google Show fit	interleukin 11 receptor, alpha
chr3_-_23512285 Show fit	0.12	ENSDART00000159151	BX682558.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr12_+_1469090 Show fit	0.11	ENSDART00000183637	usp22 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ubiquitin specific peptidase 22
chr12_-_14211293 Show fit	0.11	ENSDART00000158399	avl9 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	AVL9 homolog (S. cerevisiase)
chr19_+_20793388 Show fit	0.11	ENSDART00000142463	txnl4a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	thioredoxin-like 4A
chr16_+_45425181 Show fit	0.10	ENSDART00000168591	phf1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	PHD finger protein 1
chr1_-_13989643 Show fit	0.10	ENSDART00000191046	elf2b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	E74-like factor 2b (ets domain transcription factor)
chr19_+_20793237 Show fit	0.10	ENSDART00000014774	txnl4a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	thioredoxin-like 4A
chr25_-_7705487 Show fit	0.10	ENSDART00000128099	prdm11 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	PR domain containing 11
chr8_-_537716 Show fit	0.09	ENSDART00000051777	zgc:101664 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:101664
chr20_-_8094718 Show fit	0.09	ENSDART00000122902	si:ch211-232i5.3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-232i5.3
chr7_+_69019851 Show fit	0.09	ENSDART00000162891	CABZ01057488.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr9_-_49964810 Show fit	0.09	ENSDART00000167098	scn1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	sodium channel, voltage-gated, type I, alpha
chr4_-_63848305 Show fit	0.09	ENSDART00000097308	BX901974.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr10_+_2529037 Show fit	0.09	ENSDART00000123467	zmp:0000001301 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zmp:0000001301
chr17_+_25187226 Show fit	0.08	ENSDART00000148431	cln8 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	CLN8, transmembrane ER and ERGIC protein
chr24_+_7336411 Show fit	0.08	ENSDART00000191170	kmt2ca Links NCBI UniProt ZFIN ENSEMBL Google Show fit	lysine (K)-specific methyltransferase 2Ca
chr7_-_69647988 Show fit	0.08	ENSDART00000169943	LO018231.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr24_-_39637418 Show fit	0.07	ENSDART00000142522	fam234a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	family with sequence similarity 234, member A
chr18_+_50461981 Show fit	0.07	ENSDART00000158761	CU896640.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr14_-_14705750 Show fit	0.07	ENSDART00000168092	ogt.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	O-linked N-acetylglucosamine (GlcNAc) transferase, tandem duplicate 1
chr23_+_44374041 Show fit	0.06	ENSDART00000136056	ephb4b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	eph receptor B4b
chr20_+_35484070 Show fit	0.05	ENSDART00000026234 ENSDART00000141675	mep1a.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	meprin A, alpha (PABA peptide hydrolase), tandem duplicate 2
chr16_-_35329803 Show fit	0.05	ENSDART00000161729 ENSDART00000157700 ENSDART00000184584 ENSDART00000174713 ENSDART00000162518	ptprub Links NCBI UniProt ZFIN ENSEMBL Google Show fit	protein tyrosine phosphatase, receptor type, U, b
chr24_-_32582378 Show fit	0.05	ENSDART00000066590	rdh12l Links NCBI UniProt ZFIN ENSEMBL Google Show fit	retinol dehydrogenase 12, like
chr8_-_50888806 Show fit	0.04	ENSDART00000053750	acsl2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	acyl-CoA synthetase long chain family member 2
chr16_+_45424907 Show fit	0.04	ENSDART00000134471	phf1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	PHD finger protein 1
chr23_+_31912882 Show fit	0.04	ENSDART00000140505	armc1l Links NCBI UniProt ZFIN ENSEMBL Google Show fit	armadillo repeat containing 1, like
chr4_-_5795309 Show fit	0.04	ENSDART00000039987	pgm3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	phosphoglucomutase 3
chr4_-_76184243 Show fit	0.04	ENSDART00000180937	si:ch211-106j21.4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-106j21.4
chr20_+_39457598 Show fit	0.04	ENSDART00000140931 ENSDART00000156176	pimr128 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Pim proto-oncogene, serine/threonine kinase, related 128
chr2_+_38370535 Show fit	0.03	ENSDART00000179614	psmb11a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	proteasome subunit beta 11a
chr9_+_13229585 Show fit	0.03	ENSDART00000154879 ENSDART00000141705	carf Links NCBI UniProt ZFIN ENSEMBL Google Show fit	calcium responsive transcription factor
chr13_+_24829996 Show fit	0.03	ENSDART00000147194	si:ch211-223p8.8 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-223p8.8
chr20_-_3004126 Show fit	0.03	ENSDART00000064390	ppil4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	peptidylprolyl isomerase (cyclophilin)-like 4
chr21_+_39948300 Show fit	0.02	ENSDART00000137740	slc47a1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	solute carrier family 47 (multidrug and toxin extrusion), member 1
chr1_-_17715493 Show fit	0.02	ENSDART00000133027	si:dkey-256e7.8 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-256e7.8
chr23_+_33963619 Show fit	0.02	ENSDART00000140666 ENSDART00000084792	plpbp Links NCBI UniProt ZFIN ENSEMBL Google Show fit	pyridoxal phosphate binding protein
chr16_-_30934319 Show fit	0.02	ENSDART00000109940	gpr20 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	G protein-coupled receptor 20
chr19_+_5480327 Show fit	0.01	ENSDART00000148794	jupb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	junction plakoglobin b
chr16_-_31525290 Show fit	0.00	ENSDART00000109996	wisp1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	WNT1 inducible signaling pathway protein 1b
chr5_+_66433287 Show fit	0.00	ENSDART00000170757	kntc1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	kinetochore associated 1

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.2	0.6	GO:0048341	paraxial mesoderm morphogenesis(GO:0048340) paraxial mesoderm formation(GO:0048341)
0.2	0.5	GO:0097067	cellular response to thyroid hormone stimulus(GO:0097067)
0.1	0.2	GO:1900364	negative regulation of mRNA 3'-end processing(GO:0031441) negative regulation of mRNA polyadenylation(GO:1900364)
0.1	1.0	GO:0007339	binding of sperm to zona pellucida(GO:0007339) egg coat formation(GO:0035803) regulation of acrosome reaction(GO:0060046) positive regulation of acrosome reaction(GO:2000344)
0.0	0.2	GO:0097065	anterior head development(GO:0097065)
0.0	0.1	GO:0045830	regulation of isotype switching(GO:0045191) positive regulation of isotype switching(GO:0045830)
0.0	0.5	GO:0006995	cellular response to nitrogen starvation(GO:0006995) cellular response to nitrogen levels(GO:0043562)
0.0	0.3	GO:0048798	rRNA transcription(GO:0009303) swim bladder maturation(GO:0048796) swim bladder inflation(GO:0048798)
0.0	0.2	GO:0042661	regulation of mesodermal cell fate specification(GO:0042661)
0.0	0.2	GO:0032781	positive regulation of ATPase activity(GO:0032781)
0.0	0.5	GO:0000266	mitochondrial fission(GO:0000266)
0.0	0.2	GO:0006614	SRP-dependent cotranslational protein targeting to membrane(GO:0006614)
0.0	0.2	GO:0070816	phosphorylation of RNA polymerase II C-terminal domain(GO:0070816)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.2	GO:0048500	signal recognition particle, endoplasmic reticulum targeting(GO:0005786) signal recognition particle(GO:0048500)
0.0	0.2	GO:0000439	core TFIIH complex(GO:0000439)
0.0	0.4	GO:0005682	U5 snRNP(GO:0005682)
0.0	0.5	GO:0000421	autophagosome membrane(GO:0000421)
0.0	0.1	GO:0035145	exon-exon junction complex(GO:0035145)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.5	GO:0042809	vitamin D receptor binding(GO:0042809)
0.1	0.8	GO:0035804	structural constituent of egg coat(GO:0035804)
0.0	0.3	GO:0032190	acrosin binding(GO:0032190)
0.0	0.2	GO:0030942	endoplasmic reticulum signal peptide binding(GO:0030942)
0.0	0.3	GO:0001671	ATPase activator activity(GO:0001671)
0.0	0.2	GO:0008143	poly(A) binding(GO:0008143)
0.0	0.1	GO:0016262	protein N-acetylglucosaminyltransferase activity(GO:0016262) protein O-GlcNAc transferase activity(GO:0097363)