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PRJNA195909:zebrafish embryo and larva development

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Results for dharma

Z-value: 0.41

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Transcription factors associated with dharma

Gene Symbol Gene ID Gene Info
ENSDARG00000040955 dharma

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
dharmadr11_v1_chr15_-_29012493_29012493-0.694.0e-02Click!

Activity profile of dharma motif

Sorted Z-values of dharma motif

Promoter Log-likelihood Transcript Gene Gene Info
chr3_-_55128258 0.57 ENSDART00000101734
hemoglobin, alpha embryonic 1
chr4_-_8030583 0.52 ENSDART00000113628
si:ch211-240l19.8
chr10_+_32104305 0.34 ENSDART00000099880
wingless-type MMTV integration site family, member 11, related
chr22_-_21314821 0.32 ENSDART00000105546
ENSDART00000135388
CDC28 protein kinase regulatory subunit 2
chr19_+_7567763 0.29 ENSDART00000140411
S100 calcium binding protein A11
chr16_+_42830152 0.27 ENSDART00000159730
polymerase (RNA) III (DNA directed) polypeptide G like b
chr13_-_39947335 0.27 ENSDART00000056996
secreted frizzled-related protein 5
chr22_-_26100282 0.26 ENSDART00000166075
platelet-derived growth factor alpha polypeptide a
chr22_-_26005894 0.26 ENSDART00000105088
platelet-derived growth factor alpha polypeptide a
chr16_+_23403602 0.25 ENSDART00000159848
S100 calcium binding protein W
chr16_+_42829735 0.25 ENSDART00000014956
polymerase (RNA) III (DNA directed) polypeptide G like b
chr20_-_3915770 0.23 ENSDART00000159322
si:ch73-111k22.3
chr16_+_23404170 0.21 ENSDART00000170061
S100 calcium binding protein W
chr14_+_7140997 0.21 ENSDART00000170994
ENSDART00000129898
cathepsin F
chr3_-_18575868 0.20 ENSDART00000122968
aquaporin 8b
chr3_+_23743139 0.20 ENSDART00000187409
homeobox B3a
chr14_-_25985698 0.19 ENSDART00000172909
ENSDART00000123053
antioxidant 1 copper chaperone
chr23_+_27352072 0.19 ENSDART00000144762
si:dkey-9p24.5
chr3_+_23742868 0.19 ENSDART00000153512
homeobox B3a
chr12_+_11080776 0.18 ENSDART00000079336
retinoic acid receptor, alpha a
chr16_+_19536614 0.18 ENSDART00000112894
ENSDART00000079201
ENSDART00000139357
sp8 transcription factor b
chr17_-_6349044 0.17 ENSDART00000081707
organic cation transporter 2
chr1_+_51479128 0.16 ENSDART00000028018
Meis homeobox 1 a
chr20_-_29482492 0.16 ENSDART00000178308
actin, alpha, cardiac muscle 1a
chr23_-_28294763 0.16 ENSDART00000139537
zinc finger protein 385A
chr6_-_58757131 0.16 ENSDART00000083582
sterol O-acyltransferase 2
chr24_-_21921262 0.16 ENSDART00000186061
ENSDART00000187846
transgelin 3b
chr20_+_53441935 0.15 ENSDART00000175214
apolipoprotein Bb, tandem duplicate 2
chr24_+_2519761 0.15 ENSDART00000106619
neuritin 1a
chr21_-_20341836 0.15 ENSDART00000176689
retinol binding protein 4, like
chr25_-_31396479 0.15 ENSDART00000156828
proline rich 33
chr4_-_6809323 0.14 ENSDART00000099467
interferon-related developmental regulator 1
chr1_-_45177373 0.14 ENSDART00000143142
ENSDART00000034549
zgc:111983
chr4_-_10599062 0.13 ENSDART00000048003
tetraspanin 12
chr22_+_7462997 0.12 ENSDART00000106082
zgc:112368
chr3_-_14498295 0.12 ENSDART00000172102
ELF1 homolog, elongation factor 1
chr3_+_49521106 0.12 ENSDART00000162799
crumbs homolog 3a
chr20_-_46541834 0.12 ENSDART00000060685
ENSDART00000181720
transmembrane p24 trafficking protein 10
chr4_+_11053301 0.12 ENSDART00000140362
coiled-coil domain containing 59
chr11_+_15613218 0.12 ENSDART00000066033
growth differentiation factor 11
chr5_+_9037650 0.11 ENSDART00000158226
si:ch211-155m12.1
chr21_-_20342096 0.11 ENSDART00000065659
retinol binding protein 4, like
chr15_-_15469079 0.11 ENSDART00000132637
ENSDART00000004220
RAB34, member RAS oncogene family a
chr14_-_7141550 0.11 ENSDART00000172020
tRNA phosphotransferase 1
chr10_-_11397590 0.10 ENSDART00000064212
SREK1-interacting protein 1
chr17_+_37645633 0.09 ENSDART00000085500
transmembrane protein 229B
chr4_+_43225728 0.09 ENSDART00000158639
ENSDART00000141339
ENSDART00000137770
ENSDART00000166019
si:ch211-76m11.5
chr4_+_69712223 0.09 ENSDART00000163035
ENSDART00000164475
si:dkey-238o14.1
zgc:174944
chr15_+_15516612 0.08 ENSDART00000016024
tnf receptor-associated factor 4a
chr4_+_6639292 0.08 ENSDART00000158573
si:dkey-112e7.2
chr11_-_21585176 0.08 ENSDART00000045391
SLIT-ROBO Rho GTPase activating protein 2
chr23_+_44644911 0.08 ENSDART00000140799
zgc:85858
chr14_-_970853 0.07 ENSDART00000130801
acyl-CoA synthetase long chain family member 1b
chr7_+_38395197 0.07 ENSDART00000138669
centrosomal protein 89
chr1_+_33383644 0.07 ENSDART00000187194
dehydrogenase/reductase (SDR family) X-linked
chr1_+_292545 0.07 ENSDART00000148261
centromere protein E
chr24_-_24060460 0.07 ENSDART00000142813
ATP-binding cassette, sub-family C (CFTR/MRP), member 13
chr10_-_5016997 0.07 ENSDART00000101414
heterogeneous nuclear ribonucleoprotein D
chr15_+_36156986 0.07 ENSDART00000059791
somatostatin 1, tandem duplicate 1
chr16_+_14201401 0.06 ENSDART00000113679
death associated protein 3
chr11_-_7355995 0.06 ENSDART00000156595
si:dkey-197i20.6
chr9_-_12682848 0.06 ENSDART00000138360
myosin X-like 3
chr5_-_2282256 0.06 ENSDART00000064012
carbonic anhydrase IV a
chr3_-_54524194 0.06 ENSDART00000155406
ENSDART00000111791
si:ch73-208g10.1
chr13_+_9408101 0.06 ENSDART00000091502
si:ch211-243o19.4
chr11_+_2180072 0.06 ENSDART00000186854
ENSDART00000164839
homeobox C11b
chr8_+_37755099 0.06 ENSDART00000075708
ENSDART00000140966
glutamic-oxaloacetic transaminase 1 like 1
chr7_+_20471315 0.06 ENSDART00000173714
si:dkey-19b23.13
chr17_-_12764360 0.05 ENSDART00000003418
breast cancer metastasis-suppressor 1-like a
chr4_-_67984478 0.05 ENSDART00000160623
si:ch211-223k15.1
chr19_-_1405363 0.05 ENSDART00000165516
cilia and flagella associated protein 20
chr1_+_40291054 0.05 ENSDART00000136916
von Willebrand factor A domain containing 10, tandem duplicate 1
chr3_-_38918697 0.05 ENSDART00000145630
si:dkey-106c17.2
chr24_-_24060632 0.05 ENSDART00000090514
ATP-binding cassette, sub-family C (CFTR/MRP), member 13
chr3_+_25508247 0.05 ENSDART00000039448
melanin-concentrating hormone receptor 1b
chr7_-_40122139 0.05 ENSDART00000173982
si:ch73-174h16.5
chr21_+_30084823 0.05 ENSDART00000154573
proline-rich basic protein 1
chr23_-_28025943 0.05 ENSDART00000181146
Sp5 transcription factor-like
chr21_-_2348838 0.05 ENSDART00000160337
si:ch73-299h12.8
chr3_+_23092762 0.04 ENSDART00000142884
ENSDART00000024136
guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2a
chr22_-_17574511 0.04 ENSDART00000181496
phosphatidylinositol-4-phosphate 5-kinase, type I, gamma a
chr8_-_43923788 0.04 ENSDART00000146152
adhesion G protein-coupled receptor D1
chr4_-_43863085 0.04 ENSDART00000147130
si:dkey-261p22.1
chr3_+_26322596 0.04 ENSDART00000172700
si:ch211-156b7.5
chr7_-_12821277 0.04 ENSDART00000091584
zgc:158785
chr1_-_45146834 0.04 ENSDART00000144997
si:ch211-239f4.6
chr4_+_22480169 0.04 ENSDART00000146272
ENSDART00000066904
NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2
chr9_+_55154414 0.04 ENSDART00000182924
anosmin 1
chr7_-_40657831 0.04 ENSDART00000084153
nucleolar protein with MIF4G domain 1
chr23_-_26652273 0.04 ENSDART00000112124
ENSDART00000111029
heparan sulfate proteoglycan 2
chr4_-_56673431 0.04 ENSDART00000161464
ENSDART00000191926
si:ch211-227p7.5
chr2_-_40196547 0.04 ENSDART00000168098
chemokine (C-C motif) ligand 34a, duplicate 3
chr4_-_39186893 0.04 ENSDART00000150371
ENSDART00000121804
ENSDART00000133901
si:ch211-22k7.9
chr7_+_8456999 0.03 ENSDART00000172880
jacalin 4
chr21_-_19330333 0.03 ENSDART00000101462
mitochondrial ribosomal protein S18C
chr4_-_47096170 0.03 ENSDART00000161079
si:dkey-26m3.3
chr2_-_32386942 0.03 ENSDART00000131408
upstream binding transcription factor, like
chr21_-_22189719 0.03 ENSDART00000126908
ENSDART00000128780
olfactory marker protein b
chr7_-_18598661 0.03 ENSDART00000182109
si:ch211-119e14.2
chr18_-_5850683 0.03 ENSDART00000082087
NIP7, nucleolar pre-rRNA processing protein
chr24_+_12133814 0.03 ENSDART00000158562
ENSDART00000159029
ENSDART00000168248
leucine zipper transcription factor-like 1
chr25_-_37305738 0.03 ENSDART00000154185
si:dkey-234i14.15
chr3_-_56030117 0.03 ENSDART00000113030
ENSDART00000157764
centrosomal protein 112
chr4_-_47095583 0.03 ENSDART00000183595
ENSDART00000183279
ENSDART00000191638
si:dkey-26m3.3
chr17_-_20979077 0.03 ENSDART00000006676
phytanoyl-CoA 2-hydroxylase interacting protein-like a
chr15_+_478524 0.03 ENSDART00000018062
si:ch1073-280e3.1
chr4_+_51201875 0.03 ENSDART00000189875
ENSDART00000186722

chr4_+_58667348 0.03 ENSDART00000186596
ENSDART00000180673

chr4_-_70263609 0.03 ENSDART00000163868
si:dkey-3h2.3
chr4_+_76973771 0.03 ENSDART00000142978
si:dkey-240n22.3
chr4_-_77218637 0.03 ENSDART00000174325
proteasome subunit beta 10
chr4_-_33073382 0.03 ENSDART00000146414
si:dkeyp-4f2.1
chr3_+_57268363 0.03 ENSDART00000180725
transmembrane protein 235
chr7_-_18656069 0.03 ENSDART00000021559
coronin, actin binding protein, 1B
chr4_+_45388995 0.03 ENSDART00000150802
si:dkey-16p6.1
chr15_-_6976851 0.03 ENSDART00000158474
ENSDART00000168943
ENSDART00000169944
si:ch73-311h14.2
chr19_+_5640504 0.03 ENSDART00000179987
alpha(1,3)fucosyltransferase gene 2
chr4_-_71470455 0.03 ENSDART00000172685
si:ch211-76m11.5
chr6_+_52877147 0.02 ENSDART00000174370
odorant receptor, family H, subfamily 137, member 8
chr4_-_33763221 0.02 ENSDART00000132613
ENSDART00000191816
ENSDART00000188473
si:ch211-197f20.1
chr4_+_65487457 0.02 ENSDART00000162017
ENSDART00000193241
si:dkeyp-5g9.1
chr3_+_16771797 0.02 ENSDART00000147418
leucine rich repeat containing 3Cb
chr4_-_56103062 0.02 ENSDART00000165784
ENSDART00000190846
si:dkey-16p6.1
chr10_+_11398111 0.02 ENSDART00000064210
CWC27 spliceosome-associated protein homolog (S. cerevisiae)
chr4_-_63558838 0.02 ENSDART00000191708
ENSDART00000190740
ENSDART00000186476
si:dkey-16p6.1
chr4_-_38828508 0.02 ENSDART00000151952
si:dkey-59l11.10
chr5_+_9147497 0.02 ENSDART00000003273
ring finger and CHY zinc finger domain containing 1
chr15_+_21252532 0.02 ENSDART00000162619
ENSDART00000019636
ENSDART00000144901
ENSDART00000138676
ENSDART00000133821
ENSDART00000146967
ENSDART00000143990
ENSDART00000142070
ENSDART00000132373
upstream transcription factor 1
chr10_+_10677697 0.02 ENSDART00000188705
family with sequence similarity 163, member B
chr4_+_35227135 0.02 ENSDART00000161023
ENSDART00000182403
si:ch211-276i6.1
chr4_-_63559311 0.02 ENSDART00000164415
si:dkey-16p6.1
chr8_+_37489495 0.02 ENSDART00000141516
fibromodulin b
chr4_+_60428812 0.02 ENSDART00000162049
si:dkey-16p6.1
chr4_-_75795899 0.02 ENSDART00000157925
si:dkey-261j11.1
chr4_+_71014655 0.02 ENSDART00000170837
si:dkeyp-80d11.14
chr7_+_13756215 0.02 ENSDART00000172804
ENSDART00000018801
ENSDART00000115054
RAS-like, family 12
chr10_+_19525839 0.02 ENSDART00000162912
ENSDART00000158512
V-set and immunoglobulin domain containing 8a
chr11_+_20056732 0.02 ENSDART00000103997
FEZ family zinc finger 2
chr4_-_38539463 0.02 ENSDART00000158211
si:ch211-209n20.3
chr4_-_52783184 0.02 ENSDART00000172283
si:dkey-4j21.2
chr4_-_34460301 0.02 ENSDART00000192977
si:ch211-64i20.3
chr4_+_47782411 0.02 ENSDART00000161728
si:ch211-196h24.2
chr4_+_966061 0.02 ENSDART00000122535
RNA polymerase II associated protein 3
chr21_+_44773237 0.02 ENSDART00000084780
ring finger protein 121
chr4_-_34459615 0.02 ENSDART00000169144
ENSDART00000167022
si:ch211-64i20.3
chr4_-_71214516 0.02 ENSDART00000169997
si:ch211-205a14.7
chr18_-_17531483 0.02 ENSDART00000061000
Bardet-Biedl syndrome 2
chr8_+_46327350 0.02 ENSDART00000145618
si:dkey-75a21.2
chr4_-_75651505 0.01 ENSDART00000115143
si:dkey-71l4.2
chr9_-_14084044 0.01 ENSDART00000141571
fer-1-like family member 6
chr4_-_71416263 0.01 ENSDART00000159812
si:ch211-76m11.15
chr4_-_38829098 0.01 ENSDART00000151932
si:dkey-59l11.10
chr3_+_52475058 0.01 ENSDART00000035867
si:ch211-241f5.3
chr4_+_67994238 0.01 ENSDART00000160968
si:ch211-133h13.1
chr4_+_54862025 0.01 ENSDART00000166721
si:dkey-56m15.9
chr4_+_36616118 0.01 ENSDART00000160058
ENSDART00000170506
si:dkey-151g22.1
chr4_-_76105527 0.01 ENSDART00000159108
zgc:110171
chr21_+_5080789 0.01 ENSDART00000024199
ATP synthase F1 subunit alpha
chr5_-_69716501 0.01 ENSDART00000158956
MOB kinase activator 1A
chr3_+_43826018 0.01 ENSDART00000166197
ENSDART00000165145
lipopolysaccharide-induced TNF factor
chr9_-_31741731 0.01 ENSDART00000135022
sodium leak channel, non-selective
chr7_-_41881177 0.01 ENSDART00000174258
ENSDART00000018972
zgc:92818
chr7_+_41146560 0.01 ENSDART00000143285
ENSDART00000173852
ENSDART00000174003
ENSDART00000038487
ENSDART00000173463
ENSDART00000166448
ENSDART00000052274
poly-U binding splicing factor b
chr4_-_76186742 0.01 ENSDART00000163970
si:ch211-106j21.4
chr8_+_52642869 0.01 ENSDART00000163617
ENSDART00000189997
si:dkey-90l8.3
chr4_+_45389591 0.01 ENSDART00000162530
si:dkey-16p6.1
chr4_-_76303301 0.01 ENSDART00000158504
zgc:174944
chr4_+_75575252 0.01 ENSDART00000166536
si:ch211-227e10.1
chr4_-_45043910 0.01 ENSDART00000164068
ENSDART00000123524
ENSDART00000135010
ENSDART00000191778
si:ch211-227e10.6
chr9_+_38967248 0.01 ENSDART00000112298
microtubule-associated protein 2
chr17_+_1632294 0.01 ENSDART00000191959
signal recognition particle 14
chr4_+_58661331 0.01 ENSDART00000188763

chr13_+_9408445 0.01 ENSDART00000162415
si:ch211-243o19.4
chr14_-_1667154 0.01 ENSDART00000190474

chr1_+_49668423 0.01 ENSDART00000150880
testis specific, 10
chr15_-_8191841 0.01 ENSDART00000156663
BTB and CNC homology 1, basic leucine zipper transcription factor 1 a
chr4_-_71267777 0.01 ENSDART00000169664
si:dkeyp-51g9.4
chr6_-_39653972 0.01 ENSDART00000155859
La ribonucleoprotein domain family, member 4Ab
chr4_+_40383229 0.01 ENSDART00000126906
ENSDART00000191198
si:ch211-218h8.1
chr21_-_22115136 0.01 ENSDART00000134715
ENSDART00000089246
ENSDART00000139789
ELMO/CED-12 domain containing 1
chr19_+_3140313 0.01 ENSDART00000125504
zgc:86598
chr9_+_27352298 0.01 ENSDART00000124265
toll-like receptor 20, tandem duplicate 2
chr18_+_19006063 0.01 ENSDART00000135729
solute carrier family 24 (sodium/potassium/calcium exchanger), member 1
chr8_+_46587593 0.01 ENSDART00000075125
taste receptor, type 1, member 2, tandem duplicate 1
chr1_-_47122058 0.01 ENSDART00000159925
ENSDART00000101143
ENSDART00000176803
major histocompatibility complex class I ZEA
chr8_+_36142734 0.01 ENSDART00000159361
ENSDART00000161194
major histocompatibility complex class II integral membrane beta chain gene
chr14_+_34966598 0.01 ENSDART00000004550
ring finger protein 145a
chr2_-_48539673 0.01 ENSDART00000168202

chr4_-_34776147 0.01 ENSDART00000167498
si:dkey-146m20.14
chr4_+_70341246 0.01 ENSDART00000123408
si:ch211-76m11.3
chr4_+_46812891 0.00 ENSDART00000189655
ENSDART00000162329
si:ch211-215p11.3
chr7_+_13756374 0.00 ENSDART00000180808
RAS-like, family 12
chr4_-_71554068 0.00 ENSDART00000167414
si:dkey-27n6.1
chr14_-_46395408 0.00 ENSDART00000147537
Bardet-Biedl syndrome 7
chr7_+_62004048 0.00 ENSDART00000181818
small integral membrane protein 20
chr25_+_13321307 0.00 ENSDART00000161284
si:ch211-194m7.5
chr1_+_27690 0.00 ENSDART00000162928
embryonic ectoderm development

Network of associatons between targets according to the STRING database.

First level regulatory network of dharma

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.5 GO:0003261 cardiac muscle progenitor cell migration to the midline involved in heart field formation(GO:0003261)
0.1 0.3 GO:0044333 Wnt signaling pathway involved in digestive tract morphogenesis(GO:0044333)
0.0 0.2 GO:0030326 embryonic limb morphogenesis(GO:0030326)
0.0 0.2 GO:0006642 triglyceride mobilization(GO:0006642)
0.0 0.2 GO:0003272 endocardial cushion formation(GO:0003272)
0.0 0.2 GO:0006878 cellular copper ion homeostasis(GO:0006878)
0.0 0.1 GO:0007250 activation of NF-kappaB-inducing kinase activity(GO:0007250)
0.0 0.2 GO:0001881 receptor recycling(GO:0001881)
0.0 0.1 GO:0065001 specification of axis polarity(GO:0065001)
0.0 0.2 GO:0034435 steroid esterification(GO:0034433) sterol esterification(GO:0034434) cholesterol esterification(GO:0034435)
0.0 0.5 GO:0006383 transcription from RNA polymerase III promoter(GO:0006383)
0.0 0.1 GO:2001223 negative regulation of neuron migration(GO:2001223)
0.0 0.1 GO:0006531 aspartate metabolic process(GO:0006531)
0.0 0.1 GO:0090385 phagosome-lysosome fusion(GO:0090385)
0.0 0.1 GO:1900746 regulation of vascular endothelial growth factor signaling pathway(GO:1900746) regulation of cellular response to vascular endothelial growth factor stimulus(GO:1902547)
0.0 0.1 GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation(GO:0006388)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 GO:0034359 mature chylomicron(GO:0034359)
0.0 0.5 GO:0005666 DNA-directed RNA polymerase III complex(GO:0005666)
0.0 0.2 GO:0005869 dynactin complex(GO:0005869)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.5 GO:0005161 platelet-derived growth factor receptor binding(GO:0005161)
0.0 0.2 GO:0034736 sterol O-acyltransferase activity(GO:0004772) cholesterol O-acyltransferase activity(GO:0034736)
0.0 0.2 GO:0016531 copper chaperone activity(GO:0016531)
0.0 0.3 GO:0034632 retinol transporter activity(GO:0034632)
0.0 0.8 GO:0048306 calcium-dependent protein binding(GO:0048306)
0.0 0.3 GO:0061575 cyclin-dependent protein serine/threonine kinase activator activity(GO:0061575)
0.0 0.2 GO:0015250 water channel activity(GO:0015250)
0.0 0.2 GO:0050750 low-density lipoprotein particle receptor binding(GO:0050750) lipoprotein particle receptor binding(GO:0070325)
0.0 0.0 GO:0030273 melanin-concentrating hormone receptor activity(GO:0030273)
0.0 0.1 GO:0004069 L-aspartate:2-oxoglutarate aminotransferase activity(GO:0004069)