ISMARA results: cxxc1a+cxxc1b+mbd1a

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PRJNA195909:zebrafish embryo and larva development

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Results for cxxc1a+cxxc1b+mbd1a

Z-value: 0.11

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Transcription factors associated with cxxc1a+cxxc1b+mbd1a

Gene Symbol	Gene ID	Gene Info
cxxc1b NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000025718	CXXC finger protein 1b
mbd1a NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000101205	methyl-CpG binding domain protein 1a
cxxc1a NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000101996	CXXC finger protein 1a
cxxc1b NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000111907	CXXC finger protein 1b

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
cxxc1b	dr11_v1_chr11_+_25539698_25539698	-0.35	3.6e-01	Click!
cxxc1a	dr11_v1_chr8_+_7854130_7854130	-0.34	3.7e-01	Click!
mbd1a	dr11_v1_chr8_+_7875110_7875142	-0.16	6.7e-01	Click!

Activity profile of cxxc1a+cxxc1b+mbd1a motif

Sorted Z-values of cxxc1a+cxxc1b+mbd1a motif

Top targets:

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr11_+_44579865 Show fit	0.13	ENSDART00000173425	nid1b NCBI UniProt ZFIN ENSEMBL Google Show fit	nidogen 1b
chr21_+_29179887 Show fit	0.10	ENSDART00000161941	si:ch211-57b15.1 NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-57b15.1
chr22_-_6988102 Show fit	0.09	ENSDART00000185618	fgfr1bl NCBI UniProt ZFIN ENSEMBL Google Show fit	fibroblast growth factor receptor 1b, like
chr5_+_23136544 Show fit	0.06	ENSDART00000003428 ENSDART00000109340 ENSDART00000171039 ENSDART00000178821	prps1a NCBI UniProt ZFIN ENSEMBL Google Show fit	phosphoribosyl pyrophosphate synthetase 1A
chr11_-_438294 Show fit	0.05	ENSDART00000040812	nuf2 NCBI UniProt ZFIN ENSEMBL Google Show fit	NUF2, NDC80 kinetochore complex component, homolog
chr11_-_438492 Show fit	0.04	ENSDART00000137121 ENSDART00000133784	nuf2 NCBI UniProt ZFIN ENSEMBL Google Show fit	NUF2, NDC80 kinetochore complex component, homolog
chr3_-_19200571 Show fit	0.03	ENSDART00000131503 ENSDART00000012335	rfx1a NCBI UniProt ZFIN ENSEMBL Google Show fit	regulatory factor X, 1a (influences HLA class II expression)
chr23_-_20345473 Show fit	0.03	ENSDART00000140935	si:rp71-17i16.6 NCBI UniProt ZFIN ENSEMBL Google Show fit	si:rp71-17i16.6
chr21_-_28901095 Show fit	0.02	ENSDART00000180820	cxxc5a NCBI UniProt ZFIN ENSEMBL Google Show fit	CXXC finger protein 5a
chr14_-_48786708 Show fit	0.01	ENSDART00000169730	si:ch211-199b20.3 NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-199b20.3
chr1_-_55166511 Show fit	0.01	ENSDART00000150430 ENSDART00000035725	pane1 NCBI UniProt ZFIN ENSEMBL Google Show fit	proliferation associated nuclear element
chr17_+_26803470 Show fit	0.01	ENSDART00000023470	pgrmc2 NCBI UniProt ZFIN ENSEMBL Google Show fit	progesterone receptor membrane component 2

Network of associatons between targets according to the STRING database.

First level regulatory network of cxxc1a+cxxc1b+mbd1a

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0006015	5-phosphoribose 1-diphosphate biosynthetic process(GO:0006015) 5-phosphoribose 1-diphosphate metabolic process(GO:0046391)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0002189	ribose phosphate diphosphokinase complex(GO:0002189)
0.0	0.1	GO:0031262	Ndc80 complex(GO:0031262)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0004749	ribose phosphate diphosphokinase activity(GO:0004749)