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PRJNA195909:zebrafish embryo and larva development

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Results for cux1a

Z-value: 0.74

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Transcription factors associated with cux1a

Gene Symbol Gene ID Gene Info
cux1a
ENSDARG00000078459 cut-like homeobox 1a

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
cux1adr11_v1_chr10_-_32920690_32920690-0.844.4e-03Click!

Activity profile of cux1a motif

Sorted Z-values of cux1a motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr17_+_24597001 0.94 ENSDART00000191834
rlf
rearranged L-myc fusion
chr17_-_7792376 0.73 ENSDART00000064655
zbtb2a
zinc finger and BTB domain containing 2a
chr7_+_32695954 0.66 ENSDART00000184425
slc39a13
solute carrier family 39 (zinc transporter), member 13
chr21_-_19919918 0.64 ENSDART00000137307
ENSDART00000142523
ENSDART00000065670
ppp1r3b
protein phosphatase 1, regulatory subunit 3B
chr2_-_32513538 0.55 ENSDART00000056640
abcf2a
ATP-binding cassette, sub-family F (GCN20), member 2a
chr13_-_22961605 0.55 ENSDART00000143112
ENSDART00000057641
tspan15
tetraspanin 15
chr21_+_21012210 0.53 ENSDART00000190317
ndr1
nodal-related 1
chr2_+_23007675 0.52 ENSDART00000163649
mknk2a
MAP kinase interacting serine/threonine kinase 2a
chr14_-_7045009 0.50 ENSDART00000112082
rufy1
RUN and FYVE domain containing 1
chr16_+_1383914 0.50 ENSDART00000185089
cers2b
ceramide synthase 2b
chr18_+_45571378 0.47 ENSDART00000077251
kifc3
kinesin family member C3
chr12_-_9700605 0.47 ENSDART00000161063
heatr1
HEAT repeat containing 1
chr18_+_7611298 0.46 ENSDART00000062156
odf3b
outer dense fiber of sperm tails 3B
chr16_-_25380903 0.46 ENSDART00000086375
ENSDART00000188587
adnp2a
ADNP homeobox 2a
chr10_+_44057177 0.44 ENSDART00000164610
grk3
G protein-coupled receptor kinase 3
chr11_-_42396302 0.44 ENSDART00000165624
slmapa
sarcolemma associated protein a
chr5_+_37729207 0.43 ENSDART00000184378
cdc42ep2
CDC42 effector protein (Rho GTPase binding) 2
chr16_+_25126935 0.43 ENSDART00000058945
zgc:92590
zgc:92590
chr6_+_38896158 0.42 ENSDART00000029930
ENSDART00000131347
slc48a1b
solute carrier family 48 (heme transporter), member 1b
chr2_-_37352514 0.41 ENSDART00000140498
ENSDART00000186422
skila
SKI-like proto-oncogene a
chr8_+_16758304 0.40 ENSDART00000133514
elovl7a
ELOVL fatty acid elongase 7a
chr17_+_53435279 0.37 ENSDART00000126630
cx52.9
connexin 52.9
chr3_-_30152836 0.37 ENSDART00000165920
nucb1
nucleobindin 1
chr3_-_30153242 0.36 ENSDART00000077089
nucb1
nucleobindin 1
chr2_-_37353098 0.35 ENSDART00000056522
skila
SKI-like proto-oncogene a
chr12_+_10115964 0.35 ENSDART00000152369
si:dkeyp-118b1.2
si:dkeyp-118b1.2
chr7_-_25132592 0.34 ENSDART00000192214
badb
BCL2 associated agonist of cell death b
chr21_-_20120543 0.32 ENSDART00000065664
dusp4
dual specificity phosphatase 4
chr7_+_49272702 0.29 ENSDART00000083389
abtb2a
ankyrin repeat and BTB (POZ) domain containing 2a
chr12_+_38770654 0.28 ENSDART00000155367
kif19
kinesin family member 19
chr15_-_16704417 0.27 ENSDART00000155163
caln1
calneuron 1
chr13_-_4664403 0.27 ENSDART00000023803
ENSDART00000177957
c1d
C1D nuclear receptor corepressor
chr7_+_29863548 0.25 ENSDART00000136555
ENSDART00000134068
tln2a
talin 2a
chr20_-_54075136 0.25 ENSDART00000074255
mgat2
mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase
chr16_-_12095144 0.25 ENSDART00000145106
pex5
peroxisomal biogenesis factor 5
chr15_-_7598294 0.23 ENSDART00000165898
gbe1b
glucan (1,4-alpha-), branching enzyme 1b
chr14_-_33083539 0.23 ENSDART00000160173
dlg3
discs, large homolog 3 (Drosophila)
chr4_-_52189449 0.23 ENSDART00000192426
BX649431.4

chr12_+_14149686 0.23 ENSDART00000123741
kbtbd2
kelch repeat and BTB (POZ) domain containing 2
chr14_-_32486757 0.22 ENSDART00000148830
mcf2a
MCF.2 cell line derived transforming sequence a
chr7_-_12789251 0.22 ENSDART00000052750
adamtsl3
ADAMTS-like 3
chr19_+_14059349 0.22 ENSDART00000166230
tpbga
trophoblast glycoprotein a
chr8_-_29851706 0.22 ENSDART00000149297
slc20a2
solute carrier family 20 (phosphate transporter), member 2
chr3_-_5555500 0.20 ENSDART00000176133
ENSDART00000057464
trim35-31
tripartite motif containing 35-31
chr2_-_56649883 0.20 ENSDART00000191786
gpx4b
glutathione peroxidase 4b
chr16_+_39242339 0.20 ENSDART00000102510
zgc:77056
zgc:77056
chr4_-_14915268 0.20 ENSDART00000067040
si:dkey-180p18.9
si:dkey-180p18.9
chr17_+_45454943 0.19 ENSDART00000074838
kcnk3b
potassium channel, subfamily K, member 3b
chr3_-_31079186 0.17 ENSDART00000145636
ENSDART00000140569
ELOB (1 of many)
elob
elongin B
elongin B
chr17_+_37249736 0.15 ENSDART00000189686
CR318625.1

chr15_-_7598542 0.15 ENSDART00000173092
gbe1b
glucan (1,4-alpha-), branching enzyme 1b
chr22_-_25078650 0.15 ENSDART00000131811
ENSDART00000141546
kat14
lysine acetyltransferase 14
chr10_-_11397590 0.14 ENSDART00000064212
srek1ip1
SREK1-interacting protein 1
chr11_+_41089574 0.14 ENSDART00000170023
phf13
PHD finger protein 13
chr23_-_36446307 0.14 ENSDART00000136623
zgc:174906
zgc:174906
chr3_-_37082618 0.13 ENSDART00000026701
ENSDART00000110716
tubg1
tubulin, gamma 1
chr8_-_24135171 0.13 ENSDART00000112926
adora1b
adenosine A1 receptor b
chr16_+_4658250 0.13 ENSDART00000006212
LIN28A
si:ch1073-284b18.2
chr22_+_2844865 0.12 ENSDART00000139123
si:dkey-20i20.4
si:dkey-20i20.4
chr2_+_17451656 0.12 ENSDART00000163620
BX640408.1

chr8_-_19451487 0.12 ENSDART00000184037
zgc:92140
zgc:92140
chr23_-_24047054 0.12 ENSDART00000184308
ENSDART00000185902
CR925720.1

chr22_+_21516689 0.12 ENSDART00000105550
ENSDART00000136374
mier2
mesoderm induction early response 1, family member 2
chr11_-_20956309 0.11 ENSDART00000188659
CABZ01008739.1

chr11_+_1522136 0.10 ENSDART00000002318
srsf6b
serine/arginine-rich splicing factor 6b
chr5_+_41996889 0.10 ENSDART00000097580
pigl
phosphatidylinositol glycan anchor biosynthesis, class L
chr11_+_16152316 0.10 ENSDART00000081054
tada3l
transcriptional adaptor 3 (NGG1 homolog, yeast)-like
chr22_+_29067388 0.08 ENSDART00000133673
pimr100
Pim proto-oncogene, serine/threonine kinase, related 100
chr25_-_35182347 0.07 ENSDART00000115210
ano9a
anoctamin 9a
chr1_-_49932040 0.07 ENSDART00000048281
cyp2u1
cytochrome P450, family 2, subfamily U, polypeptide 1
chr3_+_57820913 0.07 ENSDART00000168101
CU571328.1

chr2_+_59041081 0.06 ENSDART00000067736
stk11
serine/threonine kinase 11
chr4_-_51460013 0.06 ENSDART00000193382
CR628395.1

chr15_-_9419472 0.05 ENSDART00000122117
sacs
sacsin molecular chaperone
chr8_-_14121634 0.05 ENSDART00000184946
bgna
biglycan a
chr24_+_31374324 0.05 ENSDART00000172335
ENSDART00000163162
cpne3
copine III
chr11_-_12705608 0.05 ENSDART00000158937
ENSDART00000114391
zgc:174353
zgc:174353
chr12_-_29305220 0.04 ENSDART00000153458
sh2d4bb
SH2 domain containing 4Bb
chr22_+_28969071 0.04 ENSDART00000163427
pimr95
Pim proto-oncogene, serine/threonine kinase, related 95
chr2_-_51275873 0.04 ENSDART00000168019
si:ch211-215e19.4
si:ch211-215e19.4
chrM_+_9735 0.03 ENSDART00000093613
mt-co3
cytochrome c oxidase III, mitochondrial
chr1_+_55703120 0.03 ENSDART00000141089
adgre6
adhesion G protein-coupled receptor E6
chr11_-_12673637 0.02 ENSDART00000186058
CR450764.7

chr7_-_56766973 0.02 ENSDART00000020967
csnk2a2a
casein kinase 2, alpha prime polypeptide a
chr2_+_7715810 0.02 ENSDART00000130781
eif4a2
eukaryotic translation initiation factor 4A, isoform 2
chr12_-_19091214 0.01 ENSDART00000153225
si:ch73-139e5.4
si:ch73-139e5.4

Network of associatons between targets according to the STRING database.

First level regulatory network of cux1a

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.6 GO:0005981 regulation of glycogen catabolic process(GO:0005981)
0.1 0.5 GO:0045943 positive regulation of transcription from RNA polymerase I promoter(GO:0045943)
0.1 0.2 GO:0060829 negative regulation of canonical Wnt signaling pathway involved in neural plate anterior/posterior pattern formation(GO:0060829)
0.0 0.1 GO:0000212 meiotic spindle organization(GO:0000212)
0.0 0.4 GO:0031274 pseudopodium organization(GO:0031268) pseudopodium assembly(GO:0031269) regulation of pseudopodium assembly(GO:0031272) positive regulation of pseudopodium assembly(GO:0031274)
0.0 0.4 GO:0015886 heme transport(GO:0015886) iron coordination entity transport(GO:1901678)
0.0 0.4 GO:0003315 heart rudiment formation(GO:0003315)
0.0 0.3 GO:0009312 oligosaccharide biosynthetic process(GO:0009312)
0.0 0.5 GO:0045743 positive regulation of fibroblast growth factor receptor signaling pathway(GO:0045743)
0.0 0.7 GO:0071577 zinc II ion transmembrane transport(GO:0071577)
0.0 0.3 GO:0070373 negative regulation of ERK1 and ERK2 cascade(GO:0070373)
0.0 0.3 GO:0071479 cellular response to ionizing radiation(GO:0071479)
0.0 0.8 GO:0030512 negative regulation of transforming growth factor beta receptor signaling pathway(GO:0030512) negative regulation of cellular response to transforming growth factor beta stimulus(GO:1903845)
0.0 0.2 GO:0016560 protein import into peroxisome matrix, docking(GO:0016560) protein to membrane docking(GO:0022615)
0.0 0.4 GO:0019368 fatty acid elongation, saturated fatty acid(GO:0019367) fatty acid elongation, unsaturated fatty acid(GO:0019368) fatty acid elongation, monounsaturated fatty acid(GO:0034625) fatty acid elongation, polyunsaturated fatty acid(GO:0034626)
0.0 0.5 GO:0043249 erythrocyte maturation(GO:0043249)
0.0 0.1 GO:0035588 adenosine receptor signaling pathway(GO:0001973) purinergic receptor signaling pathway(GO:0035587) G-protein coupled purinergic receptor signaling pathway(GO:0035588)
0.0 0.1 GO:0007076 mitotic chromosome condensation(GO:0007076)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.6 GO:0000164 protein phosphatase type 1 complex(GO:0000164)
0.0 0.2 GO:0030891 VCB complex(GO:0030891)
0.0 0.2 GO:0005671 Ada2/Gcn5/Ada3 transcription activator complex(GO:0005671)
0.0 0.3 GO:0000178 exosome (RNase complex)(GO:0000178)
0.0 0.5 GO:0030686 90S preribosome(GO:0030686)
0.0 0.1 GO:0000930 gamma-tubulin complex(GO:0000930)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0003844 1,4-alpha-glucan branching enzyme activity(GO:0003844)
0.1 0.5 GO:0070698 type I activin receptor binding(GO:0070698)
0.1 0.2 GO:0005252 open rectifier potassium channel activity(GO:0005252)
0.1 0.4 GO:0015232 heme transporter activity(GO:0015232)
0.0 0.6 GO:2001069 glycogen binding(GO:2001069)
0.0 0.2 GO:0047066 phospholipid-hydroperoxide glutathione peroxidase activity(GO:0047066)
0.0 0.5 GO:0050291 sphingosine N-acyltransferase activity(GO:0050291)
0.0 0.2 GO:0005052 peroxisome matrix targeting signal-1 binding(GO:0005052)
0.0 0.4 GO:0004703 G-protein coupled receptor kinase activity(GO:0004703)
0.0 0.7 GO:0005385 zinc ion transmembrane transporter activity(GO:0005385)
0.0 0.5 GO:0030515 snoRNA binding(GO:0030515)
0.0 0.3 GO:0008330 protein tyrosine/threonine phosphatase activity(GO:0008330)
0.0 0.4 GO:0009922 fatty acid elongase activity(GO:0009922) 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338)
0.0 0.1 GO:0001609 G-protein coupled adenosine receptor activity(GO:0001609)
0.0 0.2 GO:0005315 inorganic phosphate transmembrane transporter activity(GO:0005315)
0.0 0.5 GO:0008569 ATP-dependent microtubule motor activity, minus-end-directed(GO:0008569)
0.0 0.5 GO:0009931 calcium-dependent protein serine/threonine kinase activity(GO:0009931)
0.0 0.8 GO:0046332 SMAD binding(GO:0046332)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.5 PID ECADHERIN STABILIZATION PATHWAY Stabilization and expansion of the E-cadherin adherens junction
0.0 0.3 ST ERK1 ERK2 MAPK PATHWAY ERK1/ERK2 MAPK Pathway

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 REACTOME ERKS ARE INACTIVATED Genes involved in ERKs are inactivated
0.0 0.2 REACTOME IONOTROPIC ACTIVITY OF KAINATE RECEPTORS Genes involved in Ionotropic activity of Kainate Receptors
0.0 0.1 REACTOME RECRUITMENT OF NUMA TO MITOTIC CENTROSOMES Genes involved in Recruitment of NuMA to mitotic centrosomes
0.0 0.5 REACTOME ASSOCIATION OF TRIC CCT WITH TARGET PROTEINS DURING BIOSYNTHESIS Genes involved in Association of TriC/CCT with target proteins during biosynthesis