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PRJNA195909:zebrafish embryo and larva development
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Results for creb3l1
Z-value: 0.88
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Transcription factors associated with creb3l1
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| creb3l1 | dr11_v1_chr7_+_38898208_38898208 | -0.91 | 6.7e-04 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr21_-_43636595 Show fit | 1.97 |
ENSDART00000151115
ENSDART00000151486 ENSDART00000151778 |
si:ch1073-263o8.2 |
|
| chr12_+_30789611 Show fit | 1.60 |
ENSDART00000181501
|
aldehyde dehydrogenase 18 family, member A1 |
|
| chr9_+_45428041 Show fit | 1.55 |
ENSDART00000193087
|
adenosine deaminase, RNA-specific, B1b |
|
| chr17_+_10090638 Show fit | 1.54 |
ENSDART00000169522
ENSDART00000160156 |
Sec23 homolog A, COPII coat complex component |
|
| chr19_+_33139164 Show fit | 1.38 |
ENSDART00000043039
|
family with sequence similarity 84, member B |
|
| chr4_-_26095755 Show fit | 1.26 |
ENSDART00000100611
ENSDART00000191266 |
si:ch211-244b2.3 |
|
| chr18_+_2153530 Show fit | 1.25 |
ENSDART00000158255
|
pygopus family PHD finger 1 |
|
| chr12_-_35582683 Show fit | 1.21 |
ENSDART00000167933
|
SEC24 homolog C, COPII coat complex component |
|
| chr21_+_10701834 Show fit | 1.16 |
ENSDART00000192473
|
lectin, mannose-binding, 1 |
|
| chr18_-_7481036 Show fit | 1.16 |
ENSDART00000101292
|
si:dkey-238c7.16 |
Network of associatons between targets according to the STRING database.
First level regulatory network of creb3l1
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 3.8 | GO:0090110 | cargo loading into COPII-coated vesicle(GO:0090110) |
| 0.0 | 2.3 | GO:0007029 | endoplasmic reticulum organization(GO:0007029) |
| 0.1 | 1.9 | GO:0006491 | N-glycan processing(GO:0006491) |
| 0.2 | 1.6 | GO:0006561 | proline biosynthetic process(GO:0006561) L-proline biosynthetic process(GO:0055129) |
| 0.1 | 1.6 | GO:0006382 | adenosine to inosine editing(GO:0006382) |
| 0.0 | 1.5 | GO:0006904 | vesicle docking involved in exocytosis(GO:0006904) |
| 0.1 | 1.2 | GO:1905066 | regulation of canonical Wnt signaling pathway involved in heart development(GO:1905066) |
| 0.2 | 0.9 | GO:0051645 | Golgi localization(GO:0051645) |
| 0.0 | 0.8 | GO:0060158 | phospholipase C-activating dopamine receptor signaling pathway(GO:0060158) |
| 0.0 | 0.7 | GO:0009086 | methionine biosynthetic process(GO:0009086) tetrahydrofolate interconversion(GO:0035999) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 3.8 | GO:0030127 | COPII vesicle coat(GO:0030127) |
| 0.0 | 2.1 | GO:0030134 | ER to Golgi transport vesicle(GO:0030134) |
| 0.1 | 0.9 | GO:0030126 | COPI vesicle coat(GO:0030126) |
| 0.1 | 0.8 | GO:0033018 | sarcoplasmic reticulum lumen(GO:0033018) |
| 0.0 | 0.8 | GO:0005834 | heterotrimeric G-protein complex(GO:0005834) |
| 0.0 | 0.7 | GO:0009925 | basal plasma membrane(GO:0009925) |
| 0.0 | 0.4 | GO:0032588 | trans-Golgi network membrane(GO:0032588) |
| 0.1 | 0.3 | GO:0098842 | postsynaptic early endosome(GO:0098842) |
| 0.0 | 0.3 | GO:0055038 | recycling endosome membrane(GO:0055038) |
| 0.0 | 0.2 | GO:0000839 | Hrd1p ubiquitin ligase ERAD-L complex(GO:0000839) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 4.0 | GO:0000149 | SNARE binding(GO:0000149) |
| 0.2 | 2.3 | GO:0005537 | mannose binding(GO:0005537) |
| 0.2 | 1.9 | GO:0015924 | mannosyl-oligosaccharide 1,2-alpha-mannosidase activity(GO:0004571) mannosyl-oligosaccharide mannosidase activity(GO:0015924) |
| 0.3 | 1.6 | GO:0016774 | phosphotransferase activity, carboxyl group as acceptor(GO:0016774) |
| 0.1 | 1.6 | GO:0003726 | double-stranded RNA adenosine deaminase activity(GO:0003726) |
| 0.1 | 0.8 | GO:0031826 | type 2A serotonin receptor binding(GO:0031826) |
| 0.0 | 0.8 | GO:0031624 | ubiquitin conjugating enzyme binding(GO:0031624) |
| 0.0 | 0.7 | GO:0016646 | oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor(GO:0016646) |
| 0.0 | 0.7 | GO:0008331 | high voltage-gated calcium channel activity(GO:0008331) |
| 0.0 | 0.6 | GO:0046875 | ephrin receptor binding(GO:0046875) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.3 | PID TCPTP PATHWAY | Signaling events mediated by TCPTP |
| 0.0 | 1.2 | WNT SIGNALING | Genes related to Wnt-mediated signal transduction |
| 0.0 | 1.1 | PID HEDGEHOG GLI PATHWAY | Hedgehog signaling events mediated by Gli proteins |
| 0.0 | 0.4 | PID ARF6 PATHWAY | Arf6 signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 4.2 | REACTOME TRANSPORT TO THE GOLGI AND SUBSEQUENT MODIFICATION | Genes involved in Transport to the Golgi and subsequent modification |
| 0.2 | 3.8 | REACTOME ANTIGEN PRESENTATION FOLDING ASSEMBLY AND PEPTIDE LOADING OF CLASS I MHC | Genes involved in Antigen Presentation: Folding, assembly and peptide loading of class I MHC |
| 0.2 | 1.6 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.0 | 0.7 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 0.1 | 0.4 | REACTOME FACILITATIVE NA INDEPENDENT GLUCOSE TRANSPORTERS | Genes involved in Facilitative Na+-independent glucose transporters |
| 0.0 | 0.4 | REACTOME SYNTHESIS OF SUBSTRATES IN N GLYCAN BIOSYTHESIS | Genes involved in Synthesis of substrates in N-glycan biosythesis |
| 0.0 | 0.3 | REACTOME SYNTHESIS OF PE | Genes involved in Synthesis of PE |