PRJNA195909:zebrafish embryo and larva development
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
clockb | dr11_v1_chr1_+_19433004_19433004 | 0.82 | 6.3e-03 | Click! |
clocka | dr11_v1_chr20_+_22130284_22130284 | 0.76 | 1.7e-02 | Click! |
npas2 | dr11_v1_chr5_+_22791686_22791686 | 0.34 | 3.7e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr16_-_34195002 Show fit | 5.79 |
ENSDART00000054026
|
regulator of chromosome condensation 1 |
|
chr12_+_13091842 Show fit | 5.49 |
ENSDART00000185477
ENSDART00000181435 ENSDART00000124799 |
si:ch211-103b1.2 |
|
chr11_-_12800945 Show fit | 5.07 |
ENSDART00000191178
|
taxilin gamma |
|
chr11_-_12801157 Show fit | 4.94 |
ENSDART00000103449
|
taxilin gamma |
|
chr22_-_20695237 Show fit | 4.86 |
ENSDART00000112722
|
oogenesis-related gene |
|
chr5_-_16475374 Show fit | 4.52 |
ENSDART00000134274
ENSDART00000136004 |
piwi-like RNA-mediated gene silencing 2 |
|
chr9_+_20781047 Show fit | 4.38 |
ENSDART00000139174
|
family with sequence similarity 46, member C |
|
chr24_-_38644937 Show fit | 3.74 |
ENSDART00000170194
|
solute carrier family 6, member 16b |
|
chr5_+_24543862 Show fit | 3.61 |
ENSDART00000029699
|
ATPase H+ transporting V0 subunit a2b |
|
chr24_+_34069675 Show fit | 3.60 |
ENSDART00000143995
|
si:ch211-190p8.2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.2 | 12.3 | GO:0043046 | DNA methylation involved in gamete generation(GO:0043046) |
0.3 | 11.8 | GO:0030488 | tRNA methylation(GO:0030488) |
0.2 | 9.3 | GO:0030490 | maturation of SSU-rRNA(GO:0030490) |
0.3 | 5.9 | GO:0043153 | entrainment of circadian clock by photoperiod(GO:0043153) |
0.8 | 5.8 | GO:1901673 | regulation of mitotic spindle assembly(GO:1901673) |
0.4 | 5.4 | GO:0009303 | rRNA transcription(GO:0009303) |
0.3 | 5.3 | GO:0043001 | Golgi to plasma membrane protein transport(GO:0043001) |
0.2 | 5.3 | GO:0006270 | DNA replication initiation(GO:0006270) |
0.0 | 4.7 | GO:0006364 | rRNA processing(GO:0006364) |
0.0 | 4.2 | GO:0032259 | methylation(GO:0032259) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 20.3 | GO:0005730 | nucleolus(GO:0005730) |
0.6 | 6.7 | GO:0005664 | origin recognition complex(GO:0000808) nuclear origin of replication recognition complex(GO:0005664) |
0.0 | 6.6 | GO:0005654 | nucleoplasm(GO:0005654) |
0.1 | 6.5 | GO:0000786 | nucleosome(GO:0000786) DNA packaging complex(GO:0044815) |
0.0 | 5.0 | GO:0030176 | integral component of endoplasmic reticulum membrane(GO:0030176) |
0.4 | 4.6 | GO:0005736 | DNA-directed RNA polymerase I complex(GO:0005736) |
0.9 | 4.5 | GO:1990923 | PET complex(GO:1990923) |
0.1 | 4.3 | GO:0030286 | dynein complex(GO:0030286) |
0.8 | 4.1 | GO:0031515 | tRNA (m1A) methyltransferase complex(GO:0031515) |
0.2 | 4.0 | GO:0030686 | 90S preribosome(GO:0030686) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 13.7 | GO:0003724 | RNA helicase activity(GO:0003724) |
0.0 | 10.7 | GO:0005085 | guanyl-nucleotide exchange factor activity(GO:0005085) |
0.1 | 10.5 | GO:0019905 | syntaxin binding(GO:0019905) |
1.3 | 9.2 | GO:0016426 | tRNA (adenine) methyltransferase activity(GO:0016426) |
0.3 | 7.4 | GO:0034062 | DNA-directed RNA polymerase activity(GO:0003899) RNA polymerase activity(GO:0034062) |
0.1 | 7.3 | GO:0003730 | mRNA 3'-UTR binding(GO:0003730) |
0.0 | 6.9 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
0.2 | 6.6 | GO:0008175 | tRNA methyltransferase activity(GO:0008175) |
0.5 | 6.0 | GO:0015129 | lactate transmembrane transporter activity(GO:0015129) |
0.0 | 5.6 | GO:0042803 | protein homodimerization activity(GO:0042803) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 8.5 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
0.2 | 7.3 | PID FRA PATHWAY | Validated transcriptional targets of AP1 family members Fra1 and Fra2 |
0.2 | 4.5 | ST ERK1 ERK2 MAPK PATHWAY | ERK1/ERK2 MAPK Pathway |
0.2 | 3.5 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
0.1 | 3.3 | PID FOXO PATHWAY | FoxO family signaling |
0.1 | 3.0 | PID AJDISS 2PATHWAY | Posttranslational regulation of adherens junction stability and dissassembly |
0.2 | 2.2 | PID SMAD2 3PATHWAY | Regulation of cytoplasmic and nuclear SMAD2/3 signaling |
0.1 | 1.8 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
0.0 | 1.7 | PID CMYB PATHWAY | C-MYB transcription factor network |
0.1 | 1.6 | PID WNT CANONICAL PATHWAY | Canonical Wnt signaling pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 6.7 | REACTOME E2F ENABLED INHIBITION OF PRE REPLICATION COMPLEX FORMATION | Genes involved in E2F-enabled inhibition of pre-replication complex formation |
0.2 | 5.9 | REACTOME RNA POL II TRANSCRIPTION PRE INITIATION AND PROMOTER OPENING | Genes involved in RNA Polymerase II Transcription Pre-Initiation And Promoter Opening |
0.1 | 5.7 | REACTOME LATE PHASE OF HIV LIFE CYCLE | Genes involved in Late Phase of HIV Life Cycle |
0.3 | 4.7 | REACTOME BILE SALT AND ORGANIC ANION SLC TRANSPORTERS | Genes involved in Bile salt and organic anion SLC transporters |
0.0 | 4.1 | REACTOME DIABETES PATHWAYS | Genes involved in Diabetes pathways |
0.2 | 3.8 | REACTOME RNA POL I TRANSCRIPTION TERMINATION | Genes involved in RNA Polymerase I Transcription Termination |
0.1 | 3.6 | REACTOME ION TRANSPORT BY P TYPE ATPASES | Genes involved in Ion transport by P-type ATPases |
0.2 | 3.5 | REACTOME HOMOLOGOUS RECOMBINATION REPAIR OF REPLICATION INDEPENDENT DOUBLE STRAND BREAKS | Genes involved in Homologous recombination repair of replication-independent double-strand breaks |
0.2 | 3.2 | REACTOME RNA POL III TRANSCRIPTION TERMINATION | Genes involved in RNA Polymerase III Transcription Termination |
0.3 | 3.0 | REACTOME MRNA DECAY BY 3 TO 5 EXORIBONUCLEASE | Genes involved in mRNA Decay by 3' to 5' Exoribonuclease |