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PRJEB1986: zebrafish developmental stages transcriptome

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Results for zgc:101100

Z-value: 0.73

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Transcription factors associated with zgc:101100

Gene Symbol Gene ID Gene Info
zgc
ENSDARG00000021959 101100

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
zgc:101100dr11_v1_chr8_+_20488322_20488322-0.789.6e-05Click!

Activity profile of zgc:101100 motif

Sorted Z-values of zgc:101100 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr8_-_54077740 4.72 ENSDART00000027000
rho
rhodopsin
chr6_+_41186320 3.35 ENSDART00000025241
opn1mw2
opsin 1 (cone pigments), medium-wave-sensitive, 2
chr14_+_32838110 2.63 ENSDART00000158077
arr3b
arrestin 3b, retinal (X-arrestin)
chr17_-_51202339 2.46 ENSDART00000167117
si:ch1073-469d17.2
si:ch1073-469d17.2
chr11_-_15090118 2.32 ENSDART00000171118
slc1a8a
solute carrier family 1 (glutamate transporter), member 8a
chr11_-_15090564 2.19 ENSDART00000162079
slc1a8a
solute carrier family 1 (glutamate transporter), member 8a
chr7_-_13882988 2.18 ENSDART00000169828
rlbp1a
retinaldehyde binding protein 1a
chr20_-_29475172 1.92 ENSDART00000183164
scg5
secretogranin V
chr8_+_23142946 1.92 ENSDART00000152933
si:ch211-196c10.13
si:ch211-196c10.13
chr9_+_13714379 1.85 ENSDART00000017593
ENSDART00000145503
tmem237a
transmembrane protein 237a
chr3_-_28828242 1.76 ENSDART00000151445
si:ch211-76l23.4
si:ch211-76l23.4
chr14_+_32837914 1.74 ENSDART00000158888
arr3b
arrestin 3b, retinal (X-arrestin)
chr25_+_3326885 1.49 ENSDART00000104866
ldhbb
lactate dehydrogenase Bb
chr19_+_1097393 1.39 ENSDART00000168218
CABZ01111953.1

chr7_-_13884610 1.37 ENSDART00000006897
rlbp1a
retinaldehyde binding protein 1a
chr12_+_6195191 1.31 ENSDART00000043236
ENSDART00000186420
prkg1b
protein kinase, cGMP-dependent, type Ib
chr22_+_34701848 1.28 ENSDART00000082066
atpv0e2
ATPase H+ transporting V0 subunit e2
chr12_+_41991635 1.24 ENSDART00000186161
ENSDART00000192510
TCERG1L
transcription elongation regulator 1 like
chr16_-_17188294 1.21 ENSDART00000165883
opn9
opsin 9
chr2_-_30784198 1.14 ENSDART00000182523
ENSDART00000147355
rgs20
regulator of G protein signaling 20
chr10_+_17026870 1.14 ENSDART00000184529
ENSDART00000157480
CR855996.2

chr8_-_14121634 1.13 ENSDART00000184946
bgna
biglycan a
chr5_+_11407504 1.02 ENSDART00000186723
ENSDART00000018047
zgc:112294
zgc:112294
chr1_+_41690402 1.01 ENSDART00000177298
fbxo41
F-box protein 41
chr13_+_12528043 0.97 ENSDART00000057761
rrh
retinal pigment epithelium-derived rhodopsin homolog
chr7_-_49594995 0.95 ENSDART00000174161
ENSDART00000109147
brsk2b
BR serine/threonine kinase 2b
chr3_+_34919810 0.93 ENSDART00000055264
ca10b
carbonic anhydrase Xb
chr9_+_13685921 0.91 ENSDART00000145775
mpp4a
membrane protein, palmitoylated 4a (MAGUK p55 subfamily member 4)
chr14_-_2933185 0.90 ENSDART00000161677
ENSDART00000162446
ENSDART00000109378
si:dkey-201i24.6
si:dkey-201i24.6
chr1_-_45920632 0.90 ENSDART00000140890
pnpla6
patatin-like phospholipase domain containing 6
chr21_-_2348838 0.89 ENSDART00000160337
si:ch73-299h12.8
si:ch73-299h12.8
chr1_-_58009216 0.87 ENSDART00000143829
nxnl1
nucleoredoxin like 1
chr23_-_21797517 0.84 ENSDART00000110041
lrrc38a
leucine rich repeat containing 38a
chr1_+_55758257 0.82 ENSDART00000139312
tecrb
trans-2,3-enoyl-CoA reductase b
chr16_+_32059785 0.81 ENSDART00000134459
si:dkey-40m6.8
si:dkey-40m6.8
chr22_+_5103349 0.81 ENSDART00000083474
atcaya
ataxia, cerebellar, Cayman type a
chr25_+_192116 0.78 ENSDART00000153983
zgc:114188
zgc:114188
chr3_+_34220194 0.76 ENSDART00000145859
slc25a23b
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23b
chr2_-_5356686 0.75 ENSDART00000124290
MFN1
mitofusin 1
chr22_-_910926 0.68 ENSDART00000180075
FP016205.1

chr2_+_7192966 0.66 ENSDART00000142735
si:ch211-13f8.1
si:ch211-13f8.1
chr20_-_18736281 0.59 ENSDART00000142837
enpp5
ectonucleotide pyrophosphatase/phosphodiesterase 5
chr10_+_6013076 0.58 ENSDART00000167613
ENSDART00000159216
hmgcs1
3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble)
chr23_-_10137322 0.57 ENSDART00000142442
plxnb1a
plexin b1a
chr3_-_49566364 0.51 ENSDART00000161507
zgc:153426
zgc:153426
chr7_+_56615554 0.50 ENSDART00000098430
dpep1
dipeptidase 1
chr24_-_7777389 0.48 ENSDART00000138541
rpgrip1
RPGR interacting protein 1
chr7_+_67467702 0.48 ENSDART00000168460
ENSDART00000170322
rpl13
ribosomal protein L13
chr22_+_38164486 0.47 ENSDART00000137521
tm4sf18
transmembrane 4 L six family member 18
chr2_-_48171112 0.47 ENSDART00000156258
pfkpb
phosphofructokinase, platelet b
chr2_+_30786773 0.45 ENSDART00000019029
ENSDART00000145681
atp6v1h
ATPase H+ transporting V1 subunit H
chr5_+_24287927 0.45 ENSDART00000143563
zdhhc23a
zinc finger, DHHC-type containing 23a
chr7_-_57933736 0.43 ENSDART00000142580
ank2b
ankyrin 2b, neuronal
chr17_-_15149192 0.42 ENSDART00000180511
ENSDART00000103405
gch1
GTP cyclohydrolase 1
chr9_-_29544720 0.41 ENSDART00000130317
arhgap20
Rho GTPase activating protein 20
chr2_-_48171441 0.40 ENSDART00000123040
pfkpb
phosphofructokinase, platelet b
chr2_+_30787128 0.39 ENSDART00000189233
atp6v1h
ATPase H+ transporting V1 subunit H
chr25_+_19041329 0.38 ENSDART00000153467
lrtm2b
leucine-rich repeats and transmembrane domains 2b
chr6_-_59381391 0.36 ENSDART00000157066
ppp1r16b
protein phosphatase 1, regulatory subunit 16B
chr24_-_38079261 0.35 ENSDART00000105662
crp1
C-reactive protein 1
chr21_-_15046065 0.35 ENSDART00000178507
mmp17a
matrix metallopeptidase 17a
chr20_-_25436389 0.34 ENSDART00000153266
itsn2a
intersectin 2a
chr15_-_23793641 0.30 ENSDART00000122891
tmem97
transmembrane protein 97
chr11_+_37909654 0.30 ENSDART00000172211
si:ch211-112f3.4
si:ch211-112f3.4
chr19_+_24068223 0.28 ENSDART00000141351
ENSDART00000100420
pex11b
peroxisomal biogenesis factor 11 beta
chr3_+_26144765 0.28 ENSDART00000146267
ENSDART00000043932
atp2a1
ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1
chr10_-_36738619 0.24 ENSDART00000093000
ENSDART00000157179
PLEKHB1
si:ch211-176g13.7
chr19_+_4061699 0.22 ENSDART00000158309
ENSDART00000166512
btr25
btr26
bloodthirsty-related gene family, member 25
bloodthirsty-related gene family, member 26
chr2_+_30531726 0.21 ENSDART00000146518
ankrd33bb
ankyrin repeat domain 33Bb
chrM_+_9735 0.21 ENSDART00000093613
mt-co3
cytochrome c oxidase III, mitochondrial
chr14_+_5861435 0.20 ENSDART00000041279
ENSDART00000147341
tubb4b
tubulin, beta 4B class IVb
chr3_-_10970502 0.18 ENSDART00000127500
CR382337.1

chr7_+_4384863 0.16 ENSDART00000042955
ENSDART00000134653
slc12a10.3
slc12a10.3 solute carrier family 12 (sodium/potassium/chloride transporters), member 10, tandem duplicate 3
chr11_+_25583950 0.14 ENSDART00000111961
ccdc120
coiled-coil domain containing 120
chr11_-_16215470 0.13 ENSDART00000185744
rab7
RAB7, member RAS oncogene family
chr9_-_14084743 0.13 ENSDART00000056105
fer1l6
fer-1-like family member 6
chr16_-_31675669 0.13 ENSDART00000168848
ENSDART00000158331
c1r
complement component 1, r subcomponent
chr1_+_50613868 0.12 ENSDART00000111114
HERC5
si:ch73-190m4.1
chr5_+_8767290 0.12 ENSDART00000189377
CR854981.1

chr22_-_14696667 0.10 ENSDART00000180379
lrp1ba
low density lipoprotein receptor-related protein 1Ba
chr2_-_9696283 0.10 ENSDART00000165712
selenot1a
selenoprotein T, 1a
chr22_-_20695237 0.10 ENSDART00000112722
org
oogenesis-related gene
chr7_-_12821277 0.08 ENSDART00000091584
zgc:158785
zgc:158785
chr21_-_41369370 0.07 ENSDART00000159290
cpeb4b
cytoplasmic polyadenylation element binding protein 4b
chr17_-_50010121 0.06 ENSDART00000122747
tmem30aa
transmembrane protein 30Aa
chr24_-_25004553 0.06 ENSDART00000080997
ENSDART00000136860
zdhhc20b
zinc finger, DHHC-type containing 20b
chr5_+_66355153 0.05 ENSDART00000082745
si:ch211-261c8.5
si:ch211-261c8.5
chr22_+_35275468 0.04 ENSDART00000189516
ENSDART00000181572
ENSDART00000165353
ENSDART00000185352
rubcn
RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein
chr19_+_7735157 0.03 ENSDART00000186717
tuft1b
tuftelin 1b
chr13_-_33153889 0.03 ENSDART00000141451
TC2N
tandem C2 domains, nuclear
chr25_-_27819838 0.02 ENSDART00000067106
lmod2a
leiomodin 2 (cardiac) a
chr8_-_2506327 0.01 ENSDART00000101125
ENSDART00000125124
rpl6
ribosomal protein L6
chr7_+_20031202 0.01 ENSDART00000052904
slc16a13
solute carrier family 16, member 13 (monocarboxylic acid transporter 13)
chr13_-_36525982 0.01 ENSDART00000114744
pacs2
phosphofurin acidic cluster sorting protein 2
chr5_-_50748081 0.00 ENSDART00000113985
mctp1a
multiple C2 domains, transmembrane 1a
chr12_+_17042754 0.00 ENSDART00000066439
ch25h
cholesterol 25-hydroxylase

Network of associatons between targets according to the STRING database.

First level regulatory network of zgc:101100

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
1.6 4.7 GO:0016056 rhodopsin mediated signaling pathway(GO:0016056)
0.4 4.4 GO:0002031 G-protein coupled receptor internalization(GO:0002031)
0.2 0.6 GO:0010142 farnesyl diphosphate biosynthetic process, mevalonate pathway(GO:0010142) isoprenoid biosynthetic process via mevalonate(GO:1902767)
0.1 0.8 GO:0048069 eye pigmentation(GO:0048069)
0.1 3.6 GO:0007634 optokinetic behavior(GO:0007634)
0.1 5.5 GO:0007602 phototransduction(GO:0007602)
0.1 0.4 GO:0046654 tetrahydrofolate biosynthetic process(GO:0046654)
0.1 0.4 GO:0036371 protein localization to T-tubule(GO:0036371)
0.1 0.9 GO:0061620 glucose catabolic process(GO:0006007) NADH regeneration(GO:0006735) glycolytic process through fructose-6-phosphate(GO:0061615) glycolytic process through glucose-6-phosphate(GO:0061620) canonical glycolysis(GO:0061621) glucose catabolic process to pyruvate(GO:0061718)
0.1 0.8 GO:0006797 polyphosphate metabolic process(GO:0006797) polyphosphate catabolic process(GO:0006798)
0.1 0.3 GO:0090076 regulation of twitch skeletal muscle contraction(GO:0014724) regulation of fast-twitch skeletal muscle fiber contraction(GO:0031446) positive regulation of fast-twitch skeletal muscle fiber contraction(GO:0031448) negative regulation of striated muscle contraction(GO:0045988) relaxation of skeletal muscle(GO:0090076)
0.1 0.9 GO:0046470 phosphatidylcholine metabolic process(GO:0046470)
0.0 0.3 GO:0016559 peroxisome fission(GO:0016559)
0.0 0.5 GO:0046548 retinal rod cell development(GO:0046548)
0.0 1.9 GO:0046883 regulation of hormone secretion(GO:0046883)
0.0 0.9 GO:0045494 photoreceptor cell maintenance(GO:0045494)
0.0 0.6 GO:1902287 semaphorin-plexin signaling pathway involved in neuron projection guidance(GO:1902285) semaphorin-plexin signaling pathway involved in axon guidance(GO:1902287)
0.0 0.8 GO:0042761 very long-chain fatty acid biosynthetic process(GO:0042761)
0.0 0.9 GO:0036269 swimming behavior(GO:0036269)
0.0 0.2 GO:0006123 mitochondrial electron transport, cytochrome c to oxygen(GO:0006123)
0.0 1.0 GO:0030010 establishment of cell polarity(GO:0030010)
0.0 1.3 GO:1902600 hydrogen ion transmembrane transport(GO:1902600)
0.0 1.8 GO:0060027 convergent extension involved in gastrulation(GO:0060027)
0.0 0.5 GO:0018230 peptidyl-L-cysteine S-palmitoylation(GO:0018230) peptidyl-S-diacylglycerol-L-cysteine biosynthetic process from peptidyl-cysteine(GO:0018231)
0.0 0.0 GO:0090219 negative regulation of phosphatidylinositol 3-kinase activity(GO:0043553) negative regulation of lipid kinase activity(GO:0090219) negative regulation of phospholipid metabolic process(GO:1903726)
0.0 0.4 GO:1903670 regulation of sprouting angiogenesis(GO:1903670)
0.0 0.3 GO:0030574 collagen catabolic process(GO:0030574) multicellular organism catabolic process(GO:0044243)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 5.7 GO:0060170 ciliary membrane(GO:0060170)
0.1 5.2 GO:0001750 photoreceptor outer segment(GO:0001750)
0.1 0.8 GO:0000221 vacuolar proton-transporting V-type ATPase, V1 domain(GO:0000221)
0.1 1.3 GO:0033179 proton-transporting V-type ATPase, V0 domain(GO:0033179)
0.1 0.9 GO:0005945 6-phosphofructokinase complex(GO:0005945)
0.1 2.3 GO:0035869 ciliary transition zone(GO:0035869)
0.1 0.3 GO:0031673 H zone(GO:0031673)
0.0 0.3 GO:0031231 integral component of peroxisomal membrane(GO:0005779) intrinsic component of peroxisomal membrane(GO:0031231)
0.0 0.6 GO:0002116 semaphorin receptor complex(GO:0002116)
0.0 0.4 GO:0030315 T-tubule(GO:0030315)
0.0 1.9 GO:0031514 motile cilium(GO:0031514)
0.0 0.2 GO:0045277 respiratory chain complex IV(GO:0045277)
0.0 0.8 GO:0008076 voltage-gated potassium channel complex(GO:0008076) potassium channel complex(GO:0034705)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
1.6 4.7 GO:0005502 11-cis retinal binding(GO:0005502)
0.2 1.3 GO:0004692 cGMP-dependent protein kinase activity(GO:0004692)
0.2 1.5 GO:0004459 L-lactate dehydrogenase activity(GO:0004459)
0.2 0.6 GO:0004421 hydroxymethylglutaryl-CoA synthase activity(GO:0004421)
0.1 5.5 GO:0008020 G-protein coupled photoreceptor activity(GO:0008020)
0.1 0.5 GO:0070573 metallodipeptidase activity(GO:0070573)
0.1 0.4 GO:0017020 myosin phosphatase regulator activity(GO:0017020)
0.1 0.9 GO:0003872 6-phosphofructokinase activity(GO:0003872)
0.1 0.8 GO:0004309 exopolyphosphatase activity(GO:0004309)
0.0 0.9 GO:0004622 lysophospholipase activity(GO:0004622)
0.0 3.6 GO:1902936 phosphatidylinositol bisphosphate binding(GO:1902936)
0.0 1.0 GO:0050321 tau-protein kinase activity(GO:0050321)
0.0 0.7 GO:0005080 protein kinase C binding(GO:0005080)
0.0 0.4 GO:0019238 cyclohydrolase activity(GO:0019238)
0.0 0.9 GO:0004089 carbonate dehydratase activity(GO:0004089)
0.0 0.8 GO:0046961 proton-transporting ATPase activity, rotational mechanism(GO:0046961)
0.0 0.4 GO:0048495 Roundabout binding(GO:0048495)
0.0 4.7 GO:0015293 symporter activity(GO:0015293)
0.0 0.4 GO:0004190 aspartic-type endopeptidase activity(GO:0004190) aspartic-type peptidase activity(GO:0070001)
0.0 4.4 GO:0001664 G-protein coupled receptor binding(GO:0001664)
0.0 0.6 GO:0017154 semaphorin receptor activity(GO:0017154)
0.0 1.8 GO:0015078 hydrogen ion transmembrane transporter activity(GO:0015078)
0.0 0.8 GO:0044325 ion channel binding(GO:0044325)
0.0 0.8 GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors(GO:0016627)
0.0 0.5 GO:0019707 protein-cysteine S-palmitoyltransferase activity(GO:0019706) protein-cysteine S-acyltransferase activity(GO:0019707)
0.0 0.1 GO:0004791 thioredoxin-disulfide reductase activity(GO:0004791)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 4.7 ST MYOCYTE AD PATHWAY Myocyte Adrenergic Pathway is a specific case of the generalized Adrenergic Pathway.
0.0 1.1 ST G ALPHA I PATHWAY G alpha i Pathway
0.0 0.6 PID HNF3B PATHWAY FOXA2 and FOXA3 transcription factor networks

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
1.5 9.0 REACTOME OPSINS Genes involved in Opsins
0.1 0.8 REACTOME TRANSFERRIN ENDOCYTOSIS AND RECYCLING Genes involved in Transferrin endocytosis and recycling
0.1 0.4 REACTOME TETRAHYDROBIOPTERIN BH4 SYNTHESIS RECYCLING SALVAGE AND REGULATION Genes involved in Tetrahydrobiopterin (BH4) synthesis, recycling, salvage and regulation
0.0 1.1 REACTOME G ALPHA Z SIGNALLING EVENTS Genes involved in G alpha (z) signalling events
0.0 0.6 REACTOME CHOLESTEROL BIOSYNTHESIS Genes involved in Cholesterol biosynthesis
0.0 0.3 REACTOME PRE NOTCH PROCESSING IN GOLGI Genes involved in Pre-NOTCH Processing in Golgi