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PRJEB1986: zebrafish developmental stages transcriptome

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Results for zbtb12.2

Z-value: 0.38

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Transcription factors associated with zbtb12.2

Gene Symbol Gene ID Gene Info
zbtb12.2
ENSDARG00000070658 zinc finger and BTB domain containing 12, tandem duplicate 2

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
zbtb12.2dr11_v1_chr19_-_26964348_269643480.522.1e-02Click!

Activity profile of zbtb12.2 motif

Sorted Z-values of zbtb12.2 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr2_-_17114852 1.15 ENSDART00000006549
pif1
PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)
chr12_+_9849476 0.81 ENSDART00000110458
fam117ab
family with sequence similarity 117, member Ab
chr13_+_46941930 0.77 ENSDART00000056962
fbxo5
F-box protein 5
chr2_-_17115256 0.70 ENSDART00000190488
pif1
PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)
chr11_+_1551603 0.70 ENSDART00000185383
ENSDART00000121489
ENSDART00000040577
mybl2b
v-myb avian myeloblastosis viral oncogene homolog-like 2b
chr3_+_33300522 0.69 ENSDART00000114023
hspb9
heat shock protein, alpha-crystallin-related, 9
chr16_-_44709832 0.63 ENSDART00000156784
si:ch211-151m7.6
si:ch211-151m7.6
chr22_+_2048566 0.62 ENSDART00000169234
si:dkey-1b17.9
si:dkey-1b17.9
chr14_+_46342882 0.62 ENSDART00000193707
ENSDART00000060577
tmem33
transmembrane protein 33
chr19_+_20793388 0.57 ENSDART00000142463
txnl4a
thioredoxin-like 4A
chr1_+_58981985 0.54 ENSDART00000170646
ENSDART00000171055
thumpd1
THUMP domain containing 1
chr12_-_26430507 0.53 ENSDART00000153214
synpo2lb
synaptopodin 2-like b
chr19_+_20793237 0.52 ENSDART00000014774
txnl4a
thioredoxin-like 4A
chr7_-_60156409 0.51 ENSDART00000006802
cct7
chaperonin containing TCP1, subunit 7 (eta)
chr2_+_22602301 0.49 ENSDART00000038514
sept2
septin 2
chr7_+_29024282 0.49 ENSDART00000076425
cog4
component of oligomeric golgi complex 4
chr12_-_48312647 0.46 ENSDART00000114415
ascc1
activating signal cointegrator 1 complex subunit 1
chr4_+_16323970 0.44 ENSDART00000190651
BX322608.1

chr22_+_9862243 0.43 ENSDART00000105942
si:dkey-253d23.3
si:dkey-253d23.3
chr6_-_22369125 0.42 ENSDART00000083038
nprl2
NPR2 like, GATOR1 complex subunit
chr9_-_180334 0.42 ENSDART00000180339
zgc:158619
zgc:158619
chr24_-_7957581 0.41 ENSDART00000145815
txndc5
thioredoxin domain containing 5
chr19_+_3215466 0.41 ENSDART00000181288
zgc:86598
zgc:86598
chr16_-_48430272 0.41 ENSDART00000005927
rad21a
RAD21 cohesin complex component a
chr17_+_53425037 0.40 ENSDART00000154983
fabp10b
fatty acid binding protein 10b, liver basic
chr5_+_25311309 0.40 ENSDART00000169638
wu:fa19b12
wu:fa19b12
chr17_+_53424415 0.39 ENSDART00000157022
slc9a1b
solute carrier family 9 member A1b
chr22_-_9861531 0.39 ENSDART00000193197
si:dkey-253d23.2
si:dkey-253d23.2
chr17_-_12249990 0.39 ENSDART00000177889
ENSDART00000155545
ahctf1
AT hook containing transcription factor 1
chr19_+_26640096 0.39 ENSDART00000067793
ints3
integrator complex subunit 3
chr5_-_29570141 0.37 ENSDART00000043259
entpd2a.2
ectonucleoside triphosphate diphosphohydrolase 2a, tandem duplicate 2
chr1_+_218524 0.37 ENSDART00000109529
tmco3
transmembrane and coiled-coil domains 3
chr20_-_29532939 0.36 ENSDART00000049224
ENSDART00000062377
taf1b
TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B
chr5_-_42950963 0.36 ENSDART00000149868
grsf1
G-rich RNA sequence binding factor 1
chr19_-_27579805 0.36 ENSDART00000132980
ENSDART00000142263
si:dkeyp-46h3.3
si:dkeyp-46h3.3
chr7_+_21768452 0.35 ENSDART00000127719
kdm6ba
lysine (K)-specific demethylase 6B, a
chr21_-_43171249 0.33 ENSDART00000021037
ENSDART00000148630
hspa4a
heat shock protein 4a
chr14_-_32089117 0.33 ENSDART00000158014
si:ch211-69b22.5
si:ch211-69b22.5
chr21_+_20386865 0.33 ENSDART00000144366
si:dkey-30k6.5
si:dkey-30k6.5
chr18_+_8402129 0.32 ENSDART00000081154
ENSDART00000171974
prpf18
PRP18 pre-mRNA processing factor 18 homolog (yeast)
chr17_-_27419319 0.32 ENSDART00000127043
ythdf2
YTH N(6)-methyladenosine RNA binding protein 2
chr22_+_2512154 0.31 ENSDART00000097363
zgc:173726
zgc:173726
chr16_-_10837245 0.30 ENSDART00000036891
rabac1
Rab acceptor 1 (prenylated)
chr19_-_24136233 0.30 ENSDART00000143365
thap7
THAP domain containing 7
chr19_-_42945965 0.29 ENSDART00000142858
dclk3
doublecortin-like kinase 3
chr6_-_2154137 0.29 ENSDART00000162656
tgm5l
transglutaminase 5, like
chr22_+_2239974 0.28 ENSDART00000141993
znf1144
zinc finger protein 1144
chr22_-_23748284 0.28 ENSDART00000162005
cfhl2
complement factor H like 2
chr21_-_13672195 0.27 ENSDART00000146717
clic3
chloride intracellular channel 3
chr6_+_11397269 0.27 ENSDART00000114260
senp2
SUMO1/sentrin/SMT3 specific peptidase 2
chr3_-_136043 0.27 ENSDART00000160266
zgc:110249
zgc:110249
chr22_+_9862466 0.26 ENSDART00000146864
si:dkey-253d23.3
si:dkey-253d23.3
chr1_+_16127825 0.25 ENSDART00000122503
tusc3
tumor suppressor candidate 3
chr3_-_15645405 0.24 ENSDART00000133957
si:dkey-93n13.1
si:dkey-93n13.1
chr23_-_38054 0.23 ENSDART00000170393
CABZ01074076.1

chr5_-_66823750 0.22 ENSDART00000041441
ENSDART00000112488
stip1
stress-induced phosphoprotein 1
chr3_+_1055588 0.22 ENSDART00000143220
zgc:153921
zgc:153921
chr19_-_43657468 0.22 ENSDART00000150940
si:ch211-193k19.2
si:ch211-193k19.2
chr13_+_23623346 0.21 ENSDART00000057619
il22ra2
interleukin 22 receptor, alpha 2
chr22_+_2686673 0.20 ENSDART00000161580
si:dkey-20i20.15
si:dkey-20i20.15
chr6_+_12482599 0.20 ENSDART00000090316
stk24b
serine/threonine kinase 24b (STE20 homolog, yeast)
chr8_+_24281512 0.19 ENSDART00000062845
mmp9
matrix metallopeptidase 9
chr19_-_25519612 0.19 ENSDART00000133150
C1GALT1 (1 of many)
si:dkey-202e17.1
chr4_+_20085114 0.17 ENSDART00000186698
ENSDART00000188635
ppp6r2a
protein phosphatase 6, regulatory subunit 2a
chr6_+_20954400 0.16 ENSDART00000143248
ENSDART00000165806
stk11ip
serine/threonine kinase 11 interacting protein
chr22_+_9239831 0.15 ENSDART00000133720
si:ch211-250k18.5
si:ch211-250k18.5
chr8_+_43852743 0.15 ENSDART00000186485
AL808129.2

chr16_-_42175617 0.15 ENSDART00000084715
alkbh8
alkB homolog 8, tRNA methyltransferase
chr3_-_31784082 0.13 ENSDART00000134201
kcnh6a
potassium voltage-gated channel, subfamily H (eag-related), member 6a
chr15_-_26549693 0.13 ENSDART00000186432
serpinf2b
serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 2b
chr1_-_59021796 0.12 ENSDART00000168314
zgc:153247
zgc:153247
chr10_+_29849497 0.12 ENSDART00000099994
ENSDART00000132212
hspa8
heat shock protein 8
chr10_-_15048781 0.10 ENSDART00000038401
ENSDART00000155674
si:ch211-95j8.2
si:ch211-95j8.2
chr3_+_43373867 0.10 ENSDART00000159455
ENSDART00000172425
zfand2a
zinc finger, AN1-type domain 2A
chr16_+_25989943 0.10 ENSDART00000149113
si:ch73-103b2.1
si:ch73-103b2.1
chr3_-_61345723 0.10 ENSDART00000156749
si:dkey-111k8.5
si:dkey-111k8.5
chr15_+_38299563 0.09 ENSDART00000099375
si:dkey-24p1.6
si:dkey-24p1.6
chr3_-_31783737 0.08 ENSDART00000090809
kcnh6a
potassium voltage-gated channel, subfamily H (eag-related), member 6a
chr7_-_38659477 0.08 ENSDART00000138071
npsn
nephrosin
chr7_+_26173751 0.08 ENSDART00000065131
si:ch211-196f2.7
si:ch211-196f2.7
chr8_-_13428740 0.07 ENSDART00000131826
CR354547.3

chr3_+_43374571 0.07 ENSDART00000182497
zfand2a
zinc finger, AN1-type domain 2A
chr22_+_9287929 0.07 ENSDART00000193522
si:ch211-250k18.7
si:ch211-250k18.7
chr16_+_38659475 0.06 ENSDART00000023238
emc2
ER membrane protein complex subunit 2
chr13_-_4223955 0.06 ENSDART00000113060
dnph1
2'-deoxynucleoside 5'-phosphate N-hydrolase 1
chr21_+_1587722 0.05 ENSDART00000013581
wdr91
WD repeat domain 91
chr3_-_2033105 0.05 ENSDART00000135249
si:dkey-88j15.3
si:dkey-88j15.3
chr20_+_38458084 0.05 ENSDART00000020153
ENSDART00000135912
coq8a
coenzyme Q8A
chr22_+_1300587 0.05 ENSDART00000124161
si:ch73-138e16.5
si:ch73-138e16.5
chr5_-_29809945 0.05 ENSDART00000180853
BX276128.2

chr22_+_2144278 0.05 ENSDART00000162173
ENSDART00000159914
ENSDART00000160192
znf1164
zinc finger protein 1164
chr6_-_46053300 0.03 ENSDART00000169722
ca16b
carbonic anhydrase XVI b
chr2_-_20981907 0.03 ENSDART00000113384
lyrm4
LYR motif containing 4
chr7_-_58867188 0.03 ENSDART00000187006
CU681855.1

chr17_-_50454957 0.02 ENSDART00000171616
ENSDART00000075195
si:ch211-235i11.7
si:ch211-235i11.7
chr19_+_8985230 0.02 ENSDART00000018973
scamp3
secretory carrier membrane protein 3
chr6_-_54126463 0.01 ENSDART00000161059
tusc2a
tumor suppressor candidate 2a
chr17_-_50436199 0.01 ENSDART00000156494
si:ch211-235i11.6
si:ch211-235i11.6

Network of associatons between targets according to the STRING database.

First level regulatory network of zbtb12.2

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.8 GO:0051444 negative regulation of ligase activity(GO:0051352) negative regulation of ubiquitin-protein transferase activity(GO:0051444) negative regulation of ubiquitin protein ligase activity(GO:1904667)
0.2 1.9 GO:0000002 mitochondrial genome maintenance(GO:0000002)
0.1 0.3 GO:0000350 generation of catalytic spliceosome for second transesterification step(GO:0000350)
0.1 0.4 GO:0003173 ventriculo bulbo valve development(GO:0003173)
0.1 0.6 GO:1901339 regulation of store-operated calcium channel activity(GO:1901339)
0.1 0.4 GO:0051292 nuclear pore complex assembly(GO:0051292)
0.1 0.4 GO:0042790 transcription of nuclear large rRNA transcript from RNA polymerase I promoter(GO:0042790)
0.1 0.2 GO:0002544 granuloma formation(GO:0002432) chronic inflammatory response(GO:0002544) regulation of granuloma formation(GO:0002631) regulation of chronic inflammatory response(GO:0002676)
0.1 0.4 GO:0071405 response to methanol(GO:0033986) cellular response to methanol(GO:0071405)
0.1 0.2 GO:0060307 regulation of membrane repolarization(GO:0060306) regulation of ventricular cardiac muscle cell membrane repolarization(GO:0060307) regulation of cardiac muscle cell membrane repolarization(GO:0099623) ventricular cardiac muscle cell membrane repolarization(GO:0099625)
0.0 0.1 GO:1903537 meiotic cell cycle process involved in oocyte maturation(GO:1903537) regulation of meiotic cell cycle process involved in oocyte maturation(GO:1903538)
0.0 0.4 GO:0097369 sodium ion import(GO:0097369) sodium ion import across plasma membrane(GO:0098719) sodium ion import into cell(GO:1990118)
0.0 0.3 GO:0071557 histone H3-K27 demethylation(GO:0071557)
0.0 0.5 GO:0061055 myotome development(GO:0061055)
0.0 0.4 GO:2000785 regulation of autophagosome assembly(GO:2000785)
0.0 0.4 GO:0044818 mitotic G2/M transition checkpoint(GO:0044818)
0.0 0.1 GO:0048260 positive regulation of receptor-mediated endocytosis(GO:0048260) protein localization to early endosome(GO:1902946)
0.0 0.5 GO:0032233 positive regulation of actin filament bundle assembly(GO:0032233)
0.0 0.1 GO:0009162 deoxyribonucleoside monophosphate metabolic process(GO:0009162)
0.0 0.3 GO:0016926 protein desumoylation(GO:0016926)
0.0 0.2 GO:0015693 magnesium ion transport(GO:0015693)
0.0 0.3 GO:0018149 peptide cross-linking(GO:0018149)
0.0 0.5 GO:0006890 retrograde vesicle-mediated transport, Golgi to ER(GO:0006890)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0000120 RNA polymerase I transcription factor complex(GO:0000120)
0.1 1.4 GO:0005682 U5 snRNP(GO:0005682)
0.1 0.4 GO:0070876 SOSS complex(GO:0070876)
0.1 0.4 GO:1990130 Iml1 complex(GO:1990130)
0.1 0.4 GO:0034991 nuclear cohesin complex(GO:0000798) mitotic cohesin complex(GO:0030892) nuclear mitotic cohesin complex(GO:0034990) nuclear meiotic cohesin complex(GO:0034991)
0.0 0.5 GO:0005832 chaperonin-containing T-complex(GO:0005832)
0.0 0.5 GO:0017119 Golgi transport complex(GO:0017119)
0.0 1.9 GO:0005657 replication fork(GO:0005657)
0.0 0.4 GO:0005956 protein kinase CK2 complex(GO:0005956)
0.0 0.5 GO:0060170 ciliary membrane(GO:0060170)
0.0 0.3 GO:0044666 MLL3/4 complex(GO:0044666)
0.0 0.2 GO:0008250 oligosaccharyltransferase complex(GO:0008250)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.9 GO:0043139 5'-3' DNA helicase activity(GO:0043139)
0.1 0.4 GO:0001164 RNA polymerase I regulatory region DNA binding(GO:0001013) RNA polymerase I regulatory region sequence-specific DNA binding(GO:0001163) RNA polymerase I CORE element sequence-specific DNA binding(GO:0001164)
0.0 0.1 GO:0016300 tRNA (uracil) methyltransferase activity(GO:0016300)
0.0 0.4 GO:0015385 monovalent cation:proton antiporter activity(GO:0005451) sodium:proton antiporter activity(GO:0015385) potassium:proton antiporter activity(GO:0015386)
0.0 0.3 GO:0071558 histone demethylase activity (H3-K27 specific)(GO:0071558)
0.0 0.4 GO:0016864 protein disulfide isomerase activity(GO:0003756) intramolecular oxidoreductase activity, transposing S-S bonds(GO:0016864)
0.0 0.4 GO:0015299 solute:proton antiporter activity(GO:0015299)
0.0 0.4 GO:0004382 guanosine-diphosphatase activity(GO:0004382) uridine-diphosphatase activity(GO:0045134)
0.0 0.1 GO:1990247 N6-methyladenosine-containing RNA binding(GO:1990247)
0.0 0.3 GO:0016929 SUMO-specific protease activity(GO:0016929)
0.0 0.2 GO:0051879 Hsp90 protein binding(GO:0051879)
0.0 0.3 GO:0003810 protein-glutamine gamma-glutamyltransferase activity(GO:0003810)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 1.9 PID TELOMERASE PATHWAY Regulation of Telomerase
0.0 0.8 PID PLK1 PATHWAY PLK1 signaling events
0.0 0.2 PID SYNDECAN 4 PATHWAY Syndecan-4-mediated signaling events

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.8 REACTOME G1 S SPECIFIC TRANSCRIPTION Genes involved in G1/S-Specific Transcription
0.0 1.1 REACTOME MRNA SPLICING MINOR PATHWAY Genes involved in mRNA Splicing - Minor Pathway
0.0 0.2 REACTOME DEGRADATION OF THE EXTRACELLULAR MATRIX Genes involved in Degradation of the extracellular matrix
0.0 0.5 REACTOME FORMATION OF TUBULIN FOLDING INTERMEDIATES BY CCT TRIC Genes involved in Formation of tubulin folding intermediates by CCT/TriC
0.0 0.5 REACTOME LYSOSOME VESICLE BIOGENESIS Genes involved in Lysosome Vesicle Biogenesis
0.0 0.4 REACTOME RNA POL I TRANSCRIPTION TERMINATION Genes involved in RNA Polymerase I Transcription Termination