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PRJEB1986: zebrafish developmental stages transcriptome

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Results for vax2

Z-value: 0.20

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Transcription factors associated with vax2

Gene Symbol Gene ID Gene Info
ENSDARG00000058702 ventral anterior homeobox 2

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
vax2dr11_v1_chr7_-_8881514_88815140.106.9e-01Click!

Activity profile of vax2 motif

Sorted Z-values of vax2 motif

Promoter Log-likelihood Transcript Gene Gene Info
chr1_-_55248496 0.21 ENSDART00000098615
nanos homolog 3
chr17_+_30369107 0.16 ENSDART00000182286
ENSDART00000139091
growth regulation by estrogen in breast cancer 1
chr4_+_6032640 0.16 ENSDART00000157487
transcription factor EC
chr3_-_12930217 0.15 ENSDART00000166322
platelet-derived growth factor alpha polypeptide b
chr2_-_26596794 0.14 ENSDART00000134685
ENSDART00000056787
zgc:113691
chr21_+_15592426 0.14 ENSDART00000138207
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1b
chr3_-_26017831 0.13 ENSDART00000179982
heme oxygenase 1a
chr20_+_29209615 0.12 ENSDART00000062350
katanin p80 subunit B-like 1
chr16_-_42056137 0.10 ENSDART00000102798
zona pellucida glycoprotein 3d tandem duplicate 2
chr14_+_5385855 0.10 ENSDART00000031508
ladybird homeobox 2
chr17_+_8799661 0.10 ENSDART00000105326
tonsoku-like, DNA repair protein
chr24_+_19415124 0.10 ENSDART00000186931
sulfatase 1
chr15_+_6774994 0.10 ENSDART00000170011
si:ch1073-228b5.2
chr7_-_17297156 0.10 ENSDART00000161336
novel immune-type receptor 11a
chr20_+_29209767 0.08 ENSDART00000141252
katanin p80 subunit B-like 1
chr23_-_36446307 0.08 ENSDART00000136623
zgc:174906
chr8_+_26059677 0.08 ENSDART00000009178
IMP (inosine 5'-monophosphate) dehydrogenase 2
chr8_+_18011522 0.08 ENSDART00000136756
single stranded DNA binding protein 3b
chr9_-_34937025 0.08 ENSDART00000137888
cell division cycle 16 homolog (S. cerevisiae)
chr8_+_30664077 0.08 ENSDART00000138750
adenosine A2a receptor a
chr8_+_28695914 0.08 ENSDART00000033386
osteoclast stimulatory transmembrane protein
chr11_-_3533356 0.07 ENSDART00000161972
DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast)
chr19_+_3213914 0.07 ENSDART00000193144
zgc:86598
chr1_+_19303241 0.07 ENSDART00000129970
si:dkeyp-118a3.2
chr15_-_4528326 0.07 ENSDART00000158122
ENSDART00000155619
ENSDART00000128602
transcription factor Dp-2
chr2_+_105748 0.07 ENSDART00000169601

chr2_+_53720028 0.07 ENSDART00000170799
catenin, beta like 1
chr11_+_5468629 0.07 ENSDART00000013203
CSE1 chromosome segregation 1-like (yeast)
chr19_+_43396861 0.07 ENSDART00000151433
Yes-related kinase
chr10_-_2788668 0.06 ENSDART00000131749
ENSDART00000124356
ENSDART00000085031
ash2 (absent, small, or homeotic)-like (Drosophila)
chr16_+_23799622 0.06 ENSDART00000046922
RAB13, member RAS oncogene family
chr1_+_21731382 0.06 ENSDART00000054395
paired box 5
chr10_+_38560032 0.06 ENSDART00000177197

chr11_-_21528056 0.06 ENSDART00000181626
SLIT-ROBO Rho GTPase activating protein 2
chr10_+_35358675 0.06 ENSDART00000193263
si:dkey-259j3.5
chr3_-_26787430 0.06 ENSDART00000087047
RAB40c, member RAS oncogene family
chr4_+_966061 0.06 ENSDART00000122535
RNA polymerase II associated protein 3
chr1_-_45616470 0.06 ENSDART00000150165
activating transcription factor 7 interacting protein
chr22_+_2306386 0.06 ENSDART00000148300
ENSDART00000147644
si:dkey-4c15.16
chr13_-_35808904 0.06 ENSDART00000171667
mitogen-activated protein kinase kinase kinase 4
chr20_+_28861435 0.06 ENSDART00000142678
solute carrier family 10 (sodium/bile acid cotransporter), member 1
chr9_+_35015747 0.06 ENSDART00000140110
GA binding protein transcription factor, alpha subunit
chr21_-_31290582 0.06 ENSDART00000065362
carbonic anhydrase IV c
chr12_+_20587179 0.06 ENSDART00000170127
arylsulfatase G
chr21_+_27370671 0.06 ENSDART00000009234
ENSDART00000142071
RNA binding motif protein 14a
chr13_-_38039871 0.06 ENSDART00000140645

chr15_+_34988148 0.06 ENSDART00000076269
coiled-coil domain containing 105
chr11_-_40728380 0.06 ENSDART00000023745
coiled-coil domain containing 114
chr5_+_56023186 0.06 ENSDART00000156230
frizzled class receptor 9a
chr6_-_59942335 0.05 ENSDART00000168416
F-box and leucine-rich repeat protein 3b
chr15_+_23799461 0.05 ENSDART00000154885
si:ch211-167j9.4
chr15_-_43284021 0.05 ENSDART00000041677
serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2
chr21_-_31013817 0.05 ENSDART00000065504
nuclear cap binding subunit 3
chr20_-_37813863 0.05 ENSDART00000147529
basic leucine zipper transcription factor, ATF-like 3
chr7_-_60156409 0.05 ENSDART00000006802
chaperonin containing TCP1, subunit 7 (eta)
chr10_-_34002185 0.05 ENSDART00000046599
zygote arrest 1-like
chr19_+_2631565 0.05 ENSDART00000171487
family with sequence similarity 126, member A
chr8_+_2543525 0.05 ENSDART00000129569
ENSDART00000128227
GLE1 RNA export mediator homolog (yeast)
chr7_-_30174882 0.05 ENSDART00000110409
FERM domain containing 5
chr8_+_25079470 0.05 ENSDART00000000744
synaptophysin-like 2b
chr2_+_22808946 0.05 ENSDART00000133250
autoimmune regulator
chr13_-_8692860 0.05 ENSDART00000058107
multiple coagulation factor deficiency 2
chr23_+_2906031 0.05 ENSDART00000109304
c23h20orf24 homolog (H. sapiens)
chr16_+_23984179 0.05 ENSDART00000175879
apolipoprotein C-II
chr3_-_16719244 0.05 ENSDART00000055859
polymerase (DNA directed), delta 1, catalytic subunit
chr2_+_6253246 0.05 ENSDART00000058256
ENSDART00000076700
zona pellucida glycoprotein 3b
chr8_-_37249813 0.05 ENSDART00000098634
ENSDART00000140233
ENSDART00000061328
RNA binding motif protein 39b
chr23_+_42272588 0.05 ENSDART00000164907

chr6_-_55399214 0.05 ENSDART00000168367
cathepsin A
chr9_+_38372216 0.05 ENSDART00000141895
phospholipase C, delta 4b
chr9_-_11676491 0.05 ENSDART00000022358
zinc finger CCCH-type containing 15
chr12_+_3078221 0.05 ENSDART00000148835
ENSDART00000149427
sarcoglycan, alpha
chr5_-_51619742 0.04 ENSDART00000188537
orthopedia homeobox b
chr3_-_34034498 0.04 ENSDART00000151145
immunoglobulin heavy variable 11-2
chr23_-_25779995 0.04 ENSDART00000110670
si:dkey-21c19.3
chr17_-_10122204 0.04 ENSDART00000160751

chr8_-_15129573 0.04 ENSDART00000142358
BCAR3, NSP family adaptor protein
chr4_+_77943184 0.04 ENSDART00000159094
protein kinase C and casein kinase substrate in neurons 2
chr24_+_37640626 0.04 ENSDART00000008047
WD repeat domain 24
chr21_-_39177564 0.04 ENSDART00000065143
unc-119 homolog b (C. elegans)
chr20_+_539852 0.04 ENSDART00000185994
dermatan sulfate epimerase
chr25_-_13490744 0.04 ENSDART00000056721
lactate dehydrogenase D
chr17_+_28706946 0.04 ENSDART00000126967
striatin, calmodulin binding protein 3
chr2_-_24317240 0.04 ENSDART00000078975
tRNA selenocysteine 1 associated protein 1b
chr8_-_37249991 0.04 ENSDART00000189275
ENSDART00000178556
RNA binding motif protein 39b
chr15_+_36188171 0.04 ENSDART00000156598
mannan-binding lectin serine peptidase 1
chr1_+_49668423 0.04 ENSDART00000150880
testis specific, 10
chr23_-_33679579 0.04 ENSDART00000188674
transcription factor CP2
chr8_+_45186989 0.04 ENSDART00000143861
si:ch211-220m6.4
chr7_-_41746427 0.03 ENSDART00000174232
ADP-ribosylation factor-like 8
chr16_+_24684107 0.03 ENSDART00000183920
tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide like
chr14_-_30587814 0.03 ENSDART00000144912
ENSDART00000149714
transmembrane protein 265
chr6_-_12275836 0.03 ENSDART00000189980
plakophilin 4
chr16_-_20932896 0.03 ENSDART00000180646
Tax1 (human T-cell leukemia virus type I) binding protein 1b
chr3_+_32553714 0.03 ENSDART00000165638
paired box 10
chr11_+_31864921 0.03 ENSDART00000180252
diaphanous-related formin 3
chr4_+_44954486 0.03 ENSDART00000150875
si:dkeyp-100h4.8
chr20_+_29209926 0.03 ENSDART00000152949
ENSDART00000153016
katanin p80 subunit B-like 1
chr20_-_9095105 0.03 ENSDART00000140792
OMA1 zinc metallopeptidase
chr13_-_36798204 0.03 ENSDART00000012357
salvador family WW domain containing protein 1
chr15_+_21262917 0.03 ENSDART00000101000
glucuronokinase with putative uridyl pyrophosphorylase
chr6_+_7421898 0.03 ENSDART00000043946
coiled-coil domain containing 65
chr6_-_7726849 0.03 ENSDART00000151511
solute carrier family 25, member 38b
chr23_+_4709607 0.03 ENSDART00000166503
ENSDART00000158752
ENSDART00000163860
ENSDART00000172739
Raf-1 proto-oncogene, serine/threonine kinase a
Raf-1 proto-oncogene, serine/threonine kinase a
chr10_-_11261386 0.03 ENSDART00000189946
polypyrimidine tract binding protein 3
chr22_-_209741 0.03 ENSDART00000171954
olfactory receptor class A related 1
chr7_+_42461850 0.03 ENSDART00000190350
ADAM metallopeptidase with thrombospondin type 1 motif, 18
chr15_-_35134918 0.03 ENSDART00000157196
si:ch211-272b8.7
chr7_+_26173751 0.03 ENSDART00000065131
si:ch211-196f2.7
chr18_+_7073130 0.03 ENSDART00000101216
ENSDART00000148947
si:dkey-88e18.2
chr16_-_15387459 0.03 ENSDART00000053754
hyaluronan synthase 2
chr23_+_28809002 0.03 ENSDART00000134121
ENSDART00000183661
peroxisomal biogenesis factor 14
chr13_-_8692432 0.02 ENSDART00000058106
multiple coagulation factor deficiency 2
chr16_+_28994709 0.02 ENSDART00000088023
gon-4-like (C. elegans)
chr16_+_13818743 0.02 ENSDART00000090191
folliculin
chr8_-_53680653 0.02 ENSDART00000164739
wingless-type MMTV integration site family, member 5a
chr2_-_9818640 0.02 ENSDART00000139499
ENSDART00000165548
ENSDART00000012442
ENSDART00000046587
adaptor-related protein complex 2, mu 1 subunit, b
chr4_-_13548806 0.02 ENSDART00000067155
interleukin 22
chr8_+_23738122 0.02 ENSDART00000062983
ribosomal protein L10a
chr25_+_11008419 0.02 ENSDART00000156589
major histocompatibility complex class I LIA
chr12_+_48803098 0.02 ENSDART00000074768
peptidylprolyl isomerase Fb
chr3_+_54744069 0.02 ENSDART00000134958
ENSDART00000114443
si:ch211-74m13.3
chr11_-_39118882 0.02 ENSDART00000113185
ENSDART00000156526
adaptor-related protein complex 5, beta 1 subunit
chr1_+_26480890 0.02 ENSDART00000164430
USO1 vesicle transport factor
chr11_-_6452444 0.02 ENSDART00000137879
ENSDART00000134957
ENSDART00000004483
La ribonucleoprotein domain family, member 6b
chr25_-_37248795 0.02 ENSDART00000087247
ENSDART00000154045
golgi glycoprotein 1a
chr23_+_37086159 0.02 ENSDART00000074407
ceramide-1-phosphate transfer protein
chr7_+_9873750 0.02 ENSDART00000173348
ENSDART00000172813
lines homolog 1
chr18_+_17827149 0.02 ENSDART00000190237
ENSDART00000189345
si:ch211-216l23.1
chr9_-_43538328 0.02 ENSDART00000140526
zinc finger protein 385B
chr5_-_68093169 0.02 ENSDART00000051849
solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11
chr14_-_8724290 0.02 ENSDART00000161171
Pim proto-oncogene, serine/threonine kinase, related 56
chr20_-_9436521 0.02 ENSDART00000133000
zgc:101840
chr1_-_19502322 0.02 ENSDART00000181888
ENSDART00000044030
v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog b
chr4_-_30422325 0.02 ENSDART00000158444
zinc finger protein 1114
chr7_-_9873652 0.01 ENSDART00000006343
ankyrin repeat and SOCS box containing 7
chr8_-_53044300 0.01 ENSDART00000191653
nuclear receptor subfamily 6, group A, member 1a
chr11_-_44801968 0.01 ENSDART00000161846
microtubule-associated protein 1 light chain 3 gamma
chr25_+_469855 0.01 ENSDART00000104717
ribosomal L24 domain containing 1
chr10_+_11261576 0.01 ENSDART00000155333
hydroxysteroid dehydrogenase like 2
chr18_+_27821856 0.01 ENSDART00000131712
si:ch211-222m18.4
chr23_+_30827959 0.01 ENSDART00000033429
neuropeptides B/W receptor 2a
chr4_-_1801519 0.01 ENSDART00000188604
ENSDART00000135749
nudix (nucleoside diphosphate linked moiety X)-type motif 4b
chr15_+_5360407 0.01 ENSDART00000110420
odorant receptor, family A, subfamily 112, member 1
chr8_+_24296639 0.01 ENSDART00000172002
si:ch211-269m15.3
chr24_+_12894282 0.01 ENSDART00000061301
si:dkeyp-28d2.4
chr18_-_40708537 0.01 ENSDART00000077577
si:ch211-132b12.8
chr1_-_17715493 0.01 ENSDART00000133027
si:dkey-256e7.8
chr9_-_32177117 0.01 ENSDART00000078568
splicing factor 3b, subunit 1
chr24_+_26134209 0.01 ENSDART00000038824
teleost multiple tissue opsin b
chr5_-_16472719 0.01 ENSDART00000162071
piwi-like RNA-mediated gene silencing 2
chr10_+_13000669 0.01 ENSDART00000158919
ENSDART00000172625
lysophosphatidic acid receptor 1
chr13_+_40501455 0.01 ENSDART00000114985
heparanase 2
chr15_+_31303355 0.01 ENSDART00000143423
odorant receptor, family F, subfamily 116, member 2
chr14_-_34771371 0.01 ENSDART00000160598
ENSDART00000150413
ENSDART00000168910
actin binding LIM protein family, member 3
chr25_-_7705487 0.01 ENSDART00000128099
PR domain containing 11
chr24_-_37640705 0.01 ENSDART00000066583
zgc:112496
chr20_+_28861629 0.00 ENSDART00000187274
ENSDART00000047826
solute carrier family 10 (sodium/bile acid cotransporter), member 1
chr23_-_2901167 0.00 ENSDART00000165955
ENSDART00000190616
zinc fingers and homeoboxes 3
chr8_+_23521974 0.00 ENSDART00000188130
ENSDART00000129378
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Gb
chr21_+_42930558 0.00 ENSDART00000135234
serine/threonine kinase 32A
chr4_-_48957129 0.00 ENSDART00000150426
zinc finger protein 1064
chr10_-_11261565 0.00 ENSDART00000146727
polypyrimidine tract binding protein 3
chr9_-_44295071 0.00 ENSDART00000011837
neuronal differentiation 1
chr10_-_35321625 0.00 ENSDART00000131268
rhomboid domain containing 2
chr5_-_66397688 0.00 ENSDART00000161483
huntingtin interacting protein 1 related b
chr18_+_34225520 0.00 ENSDART00000126115
vomeronasal 2 receptor, l1

Network of associatons between targets according to the STRING database.

First level regulatory network of vax2

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0030718 germ-line stem cell population maintenance(GO:0030718)
0.0 0.1 GO:0007585 respiratory gaseous exchange(GO:0007585) regulation of respiratory gaseous exchange(GO:0043576)
0.0 0.1 GO:1904105 positive regulation of convergent extension involved in gastrulation(GO:1904105)
0.0 0.1 GO:0061469 regulation of type B pancreatic cell proliferation(GO:0061469)
0.0 0.1 GO:0032602 chemokine production(GO:0032602) negative T cell selection(GO:0043383) thymocyte migration(GO:0072679)
0.0 0.1 GO:0031954 positive regulation of protein autophosphorylation(GO:0031954)
0.0 0.1 GO:0048210 Golgi vesicle fusion to target membrane(GO:0048210)
0.0 0.2 GO:0061484 hematopoietic stem cell homeostasis(GO:0061484)
0.0 0.0 GO:0006089 lactate metabolic process(GO:0006089)
0.0 0.1 GO:2000290 smoothened signaling pathway involved in ventral spinal cord patterning(GO:0021910) regulation of myotome development(GO:2000290)
0.0 0.0 GO:0006297 nucleotide-excision repair, DNA gap filling(GO:0006297)
0.0 0.1 GO:2001223 negative regulation of neuron migration(GO:2001223)
0.0 0.1 GO:0006370 7-methylguanosine mRNA capping(GO:0006370)
0.0 0.1 GO:0060296 regulation of cilium movement involved in cell motility(GO:0060295) regulation of cilium beat frequency involved in ciliary motility(GO:0060296) regulation of cilium-dependent cell motility(GO:1902019)
0.0 0.0 GO:0003352 regulation of cilium movement(GO:0003352)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0035060 brahma complex(GO:0035060)
0.0 0.1 GO:0005662 DNA replication factor A complex(GO:0005662)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0004392 heme oxygenase (decyclizing) activity(GO:0004392)
0.0 0.1 GO:0000822 inositol hexakisphosphate binding(GO:0000822)
0.0 0.1 GO:0005161 platelet-derived growth factor receptor binding(GO:0005161)
0.0 0.1 GO:0003938 IMP dehydrogenase activity(GO:0003938)
0.0 0.1 GO:0001609 G-protein coupled adenosine receptor activity(GO:0001609)
0.0 0.1 GO:0008508 bile acid:sodium symporter activity(GO:0008508)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 REACTOME RECYCLING OF BILE ACIDS AND SALTS Genes involved in Recycling of bile acids and salts