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PRJEB1986: zebrafish developmental stages transcriptome

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Results for snai1b+snai3

Z-value: 0.70

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Transcription factors associated with snai1b+snai3

Gene Symbol Gene ID Gene Info
snai3
ENSDARG00000031243 snail family zinc finger 3
snai1b
ENSDARG00000046019 snail family zinc finger 1b

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
snai1bdr11_v1_chr23_-_2513300_25133000.381.1e-01Click!
snai3dr11_v1_chr7_+_55112922_55112922-0.135.9e-01Click!

Activity profile of snai1b+snai3 motif

Sorted Z-values of snai1b+snai3 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr21_-_21465111 2.73 ENSDART00000141487
nectin3b
nectin cell adhesion molecule 3b
chr19_-_35439237 1.75 ENSDART00000145883
anln
anillin, actin binding protein
chr14_-_26482096 1.11 ENSDART00000187280
smad5
SMAD family member 5
chr22_+_22438783 1.01 ENSDART00000147825
kif14
kinesin family member 14
chr17_-_11151655 1.01 ENSDART00000156383
CU179699.1

chr7_+_20917966 0.97 ENSDART00000129161
wrap53
WD repeat containing, antisense to TP53
chr6_-_130849 0.96 ENSDART00000108710
LRRC8E
si:zfos-323e3.4
chr7_-_50367642 0.94 ENSDART00000134941
prc1b
protein regulator of cytokinesis 1b
chr13_+_35955562 0.94 ENSDART00000137377
si:ch211-67f13.7
si:ch211-67f13.7
chr3_+_14641962 0.92 ENSDART00000091070
zgc:158403
zgc:158403
chr8_+_247163 0.90 ENSDART00000122378
cep120
centrosomal protein 120
chr4_-_78026285 0.85 ENSDART00000168273
CCT2
chaperonin containing TCP1 subunit 2
chr9_+_331425 0.84 ENSDART00000170312
actr5
ARP5 actin related protein 5 homolog
chr14_-_31087830 0.83 ENSDART00000002250
hs6st2
heparan sulfate 6-O-sulfotransferase 2
chr22_-_26251563 0.82 ENSDART00000060888
ENSDART00000142821
ccdc130
coiled-coil domain containing 130
chr6_-_10788065 0.82 ENSDART00000190968
wipf1b
WAS/WASL interacting protein family, member 1b
chr6_-_10728921 0.80 ENSDART00000151484
sp3b
Sp3b transcription factor
chr14_+_34514336 0.78 ENSDART00000024440
foxi3b
forkhead box I3b
chr17_+_1360192 0.76 ENSDART00000184561
siva1
SIVA1, apoptosis-inducing factor
chr6_-_10728057 0.73 ENSDART00000002247
sp3b
Sp3b transcription factor
chr2_-_30055432 0.72 ENSDART00000056747
shhb
sonic hedgehog b
chr13_-_21672131 0.72 ENSDART00000067537
elovl6l
ELOVL family member 6, elongation of long chain fatty acids like
chr25_-_16076257 0.71 ENSDART00000140780
ovch2
ovochymase 2
chr10_-_94184 0.69 ENSDART00000146125
ttc3
tetratricopeptide repeat domain 3
chr14_-_38865800 0.68 ENSDART00000173047
gsr
glutathione reductase
chr9_-_28255029 0.65 ENSDART00000160387
ccnyl1
cyclin Y-like 1
chr13_-_39254 0.63 ENSDART00000093222
gtf2a1l
general transcription factor IIA, 1-like
chr20_-_21672970 0.62 ENSDART00000133286
si:ch211-207i1.2
si:ch211-207i1.2
chr25_+_5249513 0.61 ENSDART00000126814
CABZ01039863.1

chr19_+_142270 0.60 ENSDART00000160201
tnfrsf11b
tumor necrosis factor receptor superfamily, member 11b
chr12_-_11294979 0.60 ENSDART00000148850
get4
golgi to ER traffic protein 4 homolog (S. cerevisiae)
chr17_+_45639247 0.59 ENSDART00000153669
vcpkmt
valosin containing protein lysine (K) methyltransferase
chr5_-_22052852 0.57 ENSDART00000002938
mtmr8
myotubularin related protein 8
chr5_+_53482597 0.55 ENSDART00000180333
BX323994.1

chr2_-_722156 0.55 ENSDART00000045770
ENSDART00000169498
foxq1a
forkhead box Q1a
chr21_-_43666420 0.53 ENSDART00000139008
ENSDART00000183996
ENSDART00000183395
si:dkey-229d11.3
si:dkey-229d11.5
si:dkey-229d11.3
si:dkey-229d11.5
chr20_-_9436521 0.53 ENSDART00000133000
zgc:101840
zgc:101840
chr2_-_42628028 0.52 ENSDART00000179866
myo10
myosin X
chr13_-_9119867 0.51 ENSDART00000137255
si:dkey-112g5.15
si:dkey-112g5.15
chr13_+_2894536 0.50 ENSDART00000183678
CABZ01087629.1

chr14_-_15155384 0.50 ENSDART00000172666
uvssa
UV-stimulated scaffold protein A
chr13_-_36579086 0.50 ENSDART00000146671
lgals3a
lectin, galactoside binding soluble 3a
chr5_+_6670945 0.49 ENSDART00000185686
pxna
paxillin a
chr23_-_29824146 0.48 ENSDART00000020616
zgc:194189
zgc:194189
chr13_+_23157053 0.46 ENSDART00000162359
sorbs1
sorbin and SH3 domain containing 1
chr20_-_43743700 0.46 ENSDART00000100620
si:dkeyp-50f7.2
si:dkeyp-50f7.2
chr2_+_26237322 0.45 ENSDART00000030520
palm1b
paralemmin 1b
chr22_+_2417105 0.44 ENSDART00000106415
zgc:113220
zgc:113220
chr3_-_34052882 0.44 ENSDART00000151463
ighv11-1
immunoglobulin heavy variable 11-1
chr15_+_1397811 0.43 ENSDART00000102125
schip1
schwannomin interacting protein 1
chr10_+_1052591 0.41 ENSDART00000123405
unc5c
unc-5 netrin receptor C
chr1_+_524717 0.40 ENSDART00000102421
ENSDART00000184473
mrpl16
mitochondrial ribosomal protein L16
chr7_-_50367326 0.39 ENSDART00000141926
prc1b
protein regulator of cytokinesis 1b
chr12_+_48784731 0.38 ENSDART00000158348
zmiz1b
zinc finger, MIZ-type containing 1b
chr24_+_19578935 0.36 ENSDART00000137175
sulf1
sulfatase 1
chr22_-_17256573 0.36 ENSDART00000136119
ENSDART00000062891
nphs2
nephrosis 2, idiopathic, steroid-resistant (podocin)
chr18_+_27821856 0.35 ENSDART00000131712
si:ch211-222m18.4
si:ch211-222m18.4
chr23_+_32039386 0.33 ENSDART00000133801
mylk2
myosin light chain kinase 2
chr12_-_2869565 0.33 ENSDART00000152772
zdhhc16b
zinc finger, DHHC-type containing 16b
chr20_-_23426339 0.32 ENSDART00000004625
zar1
zygote arrest 1
chr17_+_24590177 0.32 ENSDART00000092941
rlf
rearranged L-myc fusion
chr22_-_8910567 0.32 ENSDART00000187896
ENSDART00000188511
ENSDART00000175764
FO393424.2

chr21_-_41873584 0.31 ENSDART00000188089
endou2
endonuclease, polyU-specific 2
chr24_+_9372292 0.31 ENSDART00000082422
ENSDART00000191127
ENSDART00000180510
si:ch211-285f17.1
si:ch211-285f17.1
chr18_-_17531483 0.30 ENSDART00000061000
bbs2
Bardet-Biedl syndrome 2
chr1_-_43892349 0.28 ENSDART00000148416
tacr3a
tachykinin receptor 3a
chr22_-_17677947 0.27 ENSDART00000139911
tjp3
tight junction protein 3
chr22_+_20560041 0.26 ENSDART00000135490
nfil3-4
nuclear factor, interleukin 3 regulated, member 4
chr3_+_24190207 0.26 ENSDART00000034762
prr15la
proline rich 15-like a
chr25_+_5012791 0.25 ENSDART00000156970
si:ch73-265h17.5
si:ch73-265h17.5
chr25_+_27744293 0.23 ENSDART00000103519
ENSDART00000149456
wasla
Wiskott-Aldrich syndrome-like a
chr10_-_13116337 0.23 ENSDART00000164568
musk
muscle, skeletal, receptor tyrosine kinase
chr24_+_40860320 0.22 ENSDART00000161351
gorasp1b
golgi reassembly stacking protein 1b
chr17_+_50655619 0.22 ENSDART00000184917
ENSDART00000167638
ddhd1a
DDHD domain containing 1a
chr21_+_30794351 0.22 ENSDART00000139486
zgc:158225
zgc:158225
chr19_-_3106447 0.22 ENSDART00000137987
si:ch211-80h18.1
si:ch211-80h18.1
chr22_-_209741 0.21 ENSDART00000171954
ora1
olfactory receptor class A related 1
chr7_-_30926030 0.21 ENSDART00000075421
sord
sorbitol dehydrogenase
chr13_-_11800281 0.21 ENSDART00000079392
zmp:0000000662
zmp:0000000662
chr18_+_33580660 0.20 ENSDART00000139117
si:dkey-47k20.4
si:dkey-47k20.4
chr9_-_11549379 0.20 ENSDART00000187074
fev
FEV (ETS oncogene family)
chr10_-_33588106 0.19 ENSDART00000155634
eva1c
eva-1 homolog C (C. elegans)
chr12_+_16953415 0.18 ENSDART00000020824
pank1b
pantothenate kinase 1b
chr14_-_28052474 0.18 ENSDART00000172948
ENSDART00000135337
TSC22D3 (1 of many)
zgc:64189
si:ch211-220e11.3
zgc:64189
chr8_+_20140321 0.18 ENSDART00000012120
acsbg2
acyl-CoA synthetase bubblegum family member 2
chr15_+_784149 0.17 ENSDART00000155114
znf970
zinc finger protein 970
chr7_+_30926289 0.16 ENSDART00000173518
si:dkey-1h4.4
si:dkey-1h4.4
chr2_-_10896745 0.15 ENSDART00000114609
cdcp2
CUB domain containing protein 2
chr10_-_8358396 0.12 ENSDART00000059322
csgalnact1a
chondroitin sulfate N-acetylgalactosaminyltransferase 1a
chr21_+_19858627 0.11 ENSDART00000147010
fybb
FYN binding protein b
chr18_+_45666489 0.11 ENSDART00000180147
ENSDART00000151351
prrg4
proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)
chr3_+_23029934 0.11 ENSDART00000110343
nags
N-acetylglutamate synthase
chr7_-_58867188 0.11 ENSDART00000187006
CU681855.1

chr7_+_58751504 0.10 ENSDART00000024185
zgc:56231
zgc:56231
chr21_-_18648861 0.10 ENSDART00000112113
si:dkey-112m2.1
si:dkey-112m2.1
chr9_+_24708653 0.09 ENSDART00000065136
CT030712.1

chr24_-_25184553 0.09 ENSDART00000166917
plcxd2
phosphatidylinositol-specific phospholipase C, X domain containing 2
chr10_-_38468847 0.08 ENSDART00000133914
gdpd5a
glycerophosphodiester phosphodiesterase domain containing 5a
chr22_-_3595439 0.08 ENSDART00000083308
ptprsa
protein tyrosine phosphatase, receptor type, s, a
chr7_+_42328578 0.07 ENSDART00000149082
phkb
phosphorylase kinase, beta
chr18_+_6641542 0.07 ENSDART00000160379
c2cd5
C2 calcium-dependent domain containing 5
chr4_-_12790886 0.06 ENSDART00000182535
ENSDART00000067131
ENSDART00000186426
irak3
interleukin-1 receptor-associated kinase 3
chr11_-_8782871 0.02 ENSDART00000158546
si:ch211-51h4.2
si:ch211-51h4.2
chr6_-_37749711 0.01 ENSDART00000078324
nipa1
non imprinted in Prader-Willi/Angelman syndrome 1
chr2_+_9536021 0.01 ENSDART00000187357
CU929379.1

chr4_-_36476889 0.01 ENSDART00000163956
si:ch211-263l8.1
si:ch211-263l8.1
chr3_-_42016693 0.01 ENSDART00000184741
ttyh3a
tweety family member 3a
chr8_+_8196087 0.01 ENSDART00000026965
plxnb3
plexin B3
chr11_-_43473824 0.00 ENSDART00000179561
tmem63bb
transmembrane protein 63Bb
chr20_-_1314355 0.00 ENSDART00000152436
pcmt
protein-L-isoaspartate (D-aspartate) O-methyltransferase

Network of associatons between targets according to the STRING database.

First level regulatory network of snai1b+snai3

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.8 GO:0008356 asymmetric cell division(GO:0008356)
0.2 0.9 GO:0010825 positive regulation of centrosome duplication(GO:0010825)
0.2 0.8 GO:0009957 epidermal cell fate specification(GO:0009957)
0.2 1.0 GO:0030576 nuclear body organization(GO:0030575) Cajal body organization(GO:0030576)
0.1 0.7 GO:0045737 positive regulation of cyclin-dependent protein serine/threonine kinase activity(GO:0045737) positive regulation of cyclin-dependent protein kinase activity(GO:1904031)
0.1 1.3 GO:0051256 mitotic spindle elongation(GO:0000022) spindle elongation(GO:0051231) mitotic spindle midzone assembly(GO:0051256)
0.1 0.5 GO:0072677 eosinophil chemotaxis(GO:0048245) eosinophil migration(GO:0072677)
0.1 2.7 GO:0007286 spermatid development(GO:0007286)
0.1 0.7 GO:0003348 cardiac endothelial cell differentiation(GO:0003348) endocardial cell differentiation(GO:0060956)
0.1 1.1 GO:2000223 regulation of BMP signaling pathway involved in heart jogging(GO:2000223)
0.1 0.4 GO:0035332 positive regulation of hippo signaling(GO:0035332)
0.1 0.5 GO:0006283 transcription-coupled nucleotide-excision repair(GO:0006283)
0.1 0.8 GO:0061055 myotome development(GO:0061055)
0.1 0.9 GO:0060046 binding of sperm to zona pellucida(GO:0007339) egg coat formation(GO:0035803) regulation of acrosome reaction(GO:0060046) positive regulation of acrosome reaction(GO:2000344)
0.0 0.3 GO:1902093 positive regulation of sperm motility(GO:1902093)
0.0 0.6 GO:0045048 protein insertion into ER membrane(GO:0045048)
0.0 0.4 GO:0038007 netrin-activated signaling pathway(GO:0038007)
0.0 0.7 GO:0019367 fatty acid elongation, saturated fatty acid(GO:0019367) fatty acid elongation, unsaturated fatty acid(GO:0019368) fatty acid elongation, monounsaturated fatty acid(GO:0034625) fatty acid elongation, polyunsaturated fatty acid(GO:0034626)
0.0 0.3 GO:0030104 water homeostasis(GO:0030104)
0.0 0.6 GO:0018023 peptidyl-lysine trimethylation(GO:0018023)
0.0 0.2 GO:0071340 skeletal muscle acetylcholine-gated channel clustering(GO:0071340)
0.0 0.1 GO:0006526 arginine biosynthetic process(GO:0006526)
0.0 0.8 GO:0001569 patterning of blood vessels(GO:0001569)
0.0 0.3 GO:0051877 pigment granule aggregation in cell center(GO:0051877)
0.0 0.2 GO:0019405 alditol catabolic process(GO:0019405)
0.0 0.4 GO:0048096 chromatin-mediated maintenance of transcription(GO:0048096)
0.0 0.7 GO:0045454 cell redox homeostasis(GO:0045454)
0.0 0.6 GO:0007097 nuclear migration(GO:0007097) establishment of nucleus localization(GO:0040023)
0.0 0.6 GO:0010507 negative regulation of autophagy(GO:0010507)
0.0 0.2 GO:0007608 sensory perception of smell(GO:0007608)
0.0 0.1 GO:0032640 tumor necrosis factor production(GO:0032640) tumor necrosis factor superfamily cytokine production(GO:0071706)
0.0 0.4 GO:0006910 phagocytosis, recognition(GO:0006910)
0.0 1.6 GO:0030048 actin filament-based movement(GO:0030048)
0.0 0.8 GO:0043044 ATP-dependent chromatin remodeling(GO:0043044)
0.0 0.6 GO:0006367 transcription initiation from RNA polymerase II promoter(GO:0006367)
0.0 0.2 GO:0015937 coenzyme A biosynthetic process(GO:0015937)
0.0 0.1 GO:0010828 positive regulation of glucose transport(GO:0010828)
0.0 0.4 GO:0032543 mitochondrial translation(GO:0032543)
0.0 0.8 GO:0097191 extrinsic apoptotic signaling pathway(GO:0097191)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 1.8 GO:0005826 actomyosin contractile ring(GO:0005826)
0.2 0.6 GO:0005672 transcription factor TFIIA complex(GO:0005672)
0.1 1.3 GO:1990023 mitotic spindle midzone(GO:1990023)
0.1 0.6 GO:0071818 BAT3 complex(GO:0071818)
0.1 0.5 GO:0001772 immunological synapse(GO:0001772)
0.1 1.1 GO:0071144 SMAD2-SMAD3 protein complex(GO:0071144)
0.1 0.8 GO:0071014 post-mRNA release spliceosomal complex(GO:0071014)
0.1 1.0 GO:0015030 Cajal body(GO:0015030)
0.1 0.8 GO:0031011 Ino80 complex(GO:0031011) DNA helicase complex(GO:0033202)
0.0 0.3 GO:0034464 BBSome(GO:0034464)
0.0 0.3 GO:0097225 sperm midpiece(GO:0097225)
0.0 0.6 GO:0005640 nuclear outer membrane(GO:0005640)
0.0 0.4 GO:0042571 immunoglobulin complex, circulating(GO:0042571)
0.0 2.9 GO:0043296 apical junction complex(GO:0043296)
0.0 1.1 GO:0005871 kinesin complex(GO:0005871)
0.0 0.9 GO:0005814 centriole(GO:0005814)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.7 GO:0004362 glutathione-disulfide reductase activity(GO:0004362)
0.1 0.5 GO:0019865 IgE binding(GO:0019863) immunoglobulin binding(GO:0019865)
0.1 0.7 GO:0005113 patched binding(GO:0005113)
0.1 0.2 GO:0072545 tyrosine binding(GO:0072545)
0.1 0.6 GO:0052629 phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity(GO:0052629)
0.1 1.1 GO:0070411 I-SMAD binding(GO:0070411)
0.1 0.9 GO:0032190 acrosin binding(GO:0032190)
0.0 0.4 GO:0005042 netrin receptor activity(GO:0005042)
0.0 0.3 GO:0004995 tachykinin receptor activity(GO:0004995)
0.0 0.7 GO:0102337 fatty acid elongase activity(GO:0009922) 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338)
0.0 0.2 GO:0004594 pantothenate kinase activity(GO:0004594)
0.0 0.3 GO:0004687 myosin light chain kinase activity(GO:0004687)
0.0 0.2 GO:0038064 protein tyrosine kinase collagen receptor activity(GO:0038062) collagen receptor activity(GO:0038064)
0.0 0.4 GO:0034987 immunoglobulin receptor binding(GO:0034987)
0.0 0.1 GO:0016774 phosphotransferase activity, carboxyl group as acceptor(GO:0016774)
0.0 0.5 GO:0000993 RNA polymerase II core binding(GO:0000993)
0.0 0.4 GO:0008449 N-acetylglucosamine-6-sulfatase activity(GO:0008449)
0.0 2.7 GO:0042803 protein homodimerization activity(GO:0042803)
0.0 0.8 GO:0032813 tumor necrosis factor receptor superfamily binding(GO:0032813)
0.0 0.2 GO:0016405 CoA-ligase activity(GO:0016405)
0.0 0.1 GO:0047238 glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity(GO:0047238)
0.0 0.4 GO:0030374 ligand-dependent nuclear receptor transcription coactivator activity(GO:0030374)
0.0 0.1 GO:0017095 heparan sulfate 6-O-sulfotransferase activity(GO:0017095)
0.0 0.7 GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity(GO:0016538)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 1.1 PID ALK2 PATHWAY ALK2 signaling events
0.0 0.9 PID NETRIN PATHWAY Netrin-mediated signaling events
0.0 0.4 PID NEPHRIN NEPH1 PATHWAY Nephrin/Neph1 signaling in the kidney podocyte
0.0 0.3 SIG REGULATION OF THE ACTIN CYTOSKELETON BY RHO GTPASES Genes related to regulation of the actin cytoskeleton
0.0 0.5 SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES Genes related to the insulin receptor pathway

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 1.1 REACTOME SIGNALING BY BMP Genes involved in Signaling by BMP
0.1 0.8 REACTOME HS GAG BIOSYNTHESIS Genes involved in HS-GAG biosynthesis
0.0 0.9 REACTOME FORMATION OF TUBULIN FOLDING INTERMEDIATES BY CCT TRIC Genes involved in Formation of tubulin folding intermediates by CCT/TriC
0.0 0.7 REACTOME SYNTHESIS AND INTERCONVERSION OF NUCLEOTIDE DI AND TRIPHOSPHATES Genes involved in Synthesis and interconversion of nucleotide di- and triphosphates
0.0 1.0 REACTOME EXTENSION OF TELOMERES Genes involved in Extension of Telomeres
0.0 0.9 REACTOME NETRIN1 SIGNALING Genes involved in Netrin-1 signaling
0.0 0.5 REACTOME SMOOTH MUSCLE CONTRACTION Genes involved in Smooth Muscle Contraction