PRJEB1986: zebrafish developmental stages transcriptome

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
rarab Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000034893	retinoic acid receptor, alpha b
raraa Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000056783	retinoic acid receptor, alpha a
rarab Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000111757	retinoic acid receptor, alpha b

Gene	Promoter	Pearson corr. coef.	P-value	Plot
rarab	dr11_v1_chr3_-_33175583_33175583	0.31	2.0e-01	Click!
raraa	dr11_v1_chr12_+_11007286_11007286	-0.13	5.9e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr21_+_28445052 Show fit	0.17	ENSDART00000077871	pygma Links NCBI UniProt ZFIN ENSEMBL Google Show fit	phosphorylase, glycogen, muscle A
chr17_+_33340675 Show fit	0.13	ENSDART00000184396 ENSDART00000077553	xdh Links NCBI UniProt ZFIN ENSEMBL Google Show fit	xanthine dehydrogenase
chr14_-_50892442 Show fit	0.13	ENSDART00000174562	CDHR2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cadherin related family member 2
chr3_+_33367954 Show fit	0.11	ENSDART00000103161	mpp2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	membrane protein, palmitoylated 2a (MAGUK p55 subfamily member 2)
chr2_+_52847049 Show fit	0.10	ENSDART00000121980	creb3l3b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cAMP responsive element binding protein 3-like 3b
chr8_-_28342313 Show fit	0.09	ENSDART00000005583	kdm5bb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	lysine (K)-specific demethylase 5Bb
chr6_+_103361 Show fit	0.08	ENSDART00000151899	ldlrb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	low density lipoprotein receptor b
chr1_+_57348756 Show fit	0.08	ENSDART00000063750	b3gntl1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1
chr15_+_1199407 Show fit	0.08	ENSDART00000163827	mfsd1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	major facilitator superfamily domain containing 1
chr17_+_14711765 Show fit	0.07	ENSDART00000012889	cx28.6 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	connexin 28.6
chr14_-_2001386 Show fit	0.07	ENSDART00000170346 ENSDART00000163975	pcdh2g5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	protocadherin 2 gamma 5
chr2_-_16449504 Show fit	0.07	ENSDART00000144801	atr Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ATR serine/threonine kinase
chr2_+_58841181 Show fit	0.07	ENSDART00000164102	cirbpa Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cold inducible RNA binding protein a
chr2_+_56213694 Show fit	0.06	ENSDART00000162582	upf1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	upf1 regulator of nonsense transcripts homolog (yeast)
chr18_+_3338228 Show fit	0.05	ENSDART00000161520	gdpd4a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	glycerophosphodiester phosphodiesterase domain containing 4a
chr17_+_53311618 Show fit	0.05	ENSDART00000166517	asb2b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ankyrin repeat and SOCS box containing 2b
chr4_-_191736 Show fit	0.05	ENSDART00000169187 ENSDART00000192054	ptpro Links NCBI UniProt ZFIN ENSEMBL Google Show fit	protein tyrosine phosphatase, receptor type, O
chr15_+_47582207 Show fit	0.05	ENSDART00000159388	CABZ01087566.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr14_+_94946 Show fit	0.05	ENSDART00000165766 ENSDART00000163778	mcm7 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	minichromosome maintenance complex component 7
chr14_+_94603 Show fit	0.05	ENSDART00000162480	mcm7 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	minichromosome maintenance complex component 7
chr14_-_51855047 Show fit	0.05	ENSDART00000088912	cplx1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	complexin 1
chr6_-_8277221 Show fit	0.05	ENSDART00000053869	slc44a2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	solute carrier family 44 (choline transporter), member 2
chr24_-_36727922 Show fit	0.04	ENSDART00000135142	si:ch73-334d15.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch73-334d15.1
chr18_+_43183749 Show fit	0.04	ENSDART00000151166	nectin1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	nectin cell adhesion molecule 1b
chr18_+_7073130 Show fit	0.04	ENSDART00000101216 ENSDART00000148947	si:dkey-88e18.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-88e18.2
chr19_+_19762183 Show fit	0.04	ENSDART00000163611 ENSDART00000187604	hoxa3a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	homeobox A3a
chr23_-_21758253 Show fit	0.04	ENSDART00000046613	vps13d Links NCBI UniProt ZFIN ENSEMBL Google Show fit	vacuolar protein sorting 13 homolog D (S. cerevisiae)
chr8_+_37168570 Show fit	0.04	ENSDART00000098636	csf1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	colony stimulating factor 1b (macrophage)
chr2_+_3696038 Show fit	0.04	ENSDART00000150499 ENSDART00000136906 ENSDART00000164152 ENSDART00000128514 ENSDART00000108964	egfra Links NCBI UniProt ZFIN ENSEMBL Google Show fit	epidermal growth factor receptor a (erythroblastic leukemia viral (v-erb-b) oncogene homolog, avian)
chr3_+_57268363 Show fit	0.04	ENSDART00000180725	TMEM235 (1 of many) Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transmembrane protein 235
chr21_-_43482426 Show fit	0.04	ENSDART00000192901	ankrd46a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ankyrin repeat domain 46a
chr5_-_3885727 Show fit	0.04	ENSDART00000143250	mlxipl Links NCBI UniProt ZFIN ENSEMBL Google Show fit	MLX interacting protein like
chr22_+_21324398 Show fit	0.04	ENSDART00000168509	shc2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	SHC (Src homology 2 domain containing) transforming protein 2
chr25_-_3132060 Show fit	0.03	ENSDART00000014363	epx Links NCBI UniProt ZFIN ENSEMBL Google Show fit	eosinophil peroxidase
chr24_+_37723362 Show fit	0.03	ENSDART00000136836	rab11fip3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	RAB11 family interacting protein 3 (class II)
chr23_-_3703569 Show fit	0.02	ENSDART00000143731	pacsin1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	protein kinase C and casein kinase substrate in neurons 1a
chr13_+_28618086 Show fit	0.02	ENSDART00000087001	cnnm2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cyclin and CBS domain divalent metal cation transport mediator 2a
chr9_+_500052 Show fit	0.02	ENSDART00000166707	CU984600.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr8_-_13454281 Show fit	0.02	ENSDART00000141959	CR354547.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr22_+_30009926 Show fit	0.02	ENSDART00000142529	si:dkey-286j15.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-286j15.1
chr4_+_1530287 Show fit	0.02	ENSDART00000067446	slc38a4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	solute carrier family 38, member 4
chr24_+_42117231 Show fit	0.02	ENSDART00000067734	snx16 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	sorting nexin 16
chr21_+_7332963 Show fit	0.02	ENSDART00000169834	AP3B1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	adaptor related protein complex 3 beta 1 subunit
chr21_+_2506013 Show fit	0.02	ENSDART00000162351	hmgcrb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	3-hydroxy-3-methylglutaryl-CoA reductase b
chr8_-_13442871 Show fit	0.02	ENSDART00000144887	pimr106 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Pim proto-oncogene, serine/threonine kinase, related 106
chr11_+_1608348 Show fit	0.01	ENSDART00000162438	si:dkey-40c23.3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-40c23.3
chr19_+_7938121 Show fit	0.01	ENSDART00000140053 ENSDART00000146649	si:dkey-266f7.5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-266f7.5
chr12_+_2677303 Show fit	0.01	ENSDART00000093113	antxr1c Links NCBI UniProt ZFIN ENSEMBL Google Show fit	anthrax toxin receptor 1c
chr10_-_41450367 Show fit	0.01	ENSDART00000122682 ENSDART00000189549	cabp1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	calcium binding protein 1b
chr22_+_20208185 Show fit	0.01	ENSDART00000142748	si:dkey-110c1.7 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-110c1.7
chr18_+_1145571 Show fit	0.01	ENSDART00000135055	rec114 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	REC114 meiotic recombination protein
chr17_+_14886828 Show fit	0.01	ENSDART00000010507 ENSDART00000131052	ptger2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	prostaglandin E receptor 2a (subtype EP2)
chr18_+_19842569 Show fit	0.01	ENSDART00000147470	iqch Links NCBI UniProt ZFIN ENSEMBL Google Show fit	IQ motif containing H
chr1_+_58332000 Show fit	0.01	ENSDART00000145234	ggt1l2.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	gamma-glutamyltransferase 1 like 2.1
chr25_+_2263857 Show fit	0.01	ENSDART00000076439	yars2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	tyrosyl-tRNA synthetase 2, mitochondrial
chr14_-_52552875 Show fit	0.01	ENSDART00000170107	ppp2r2ba Links NCBI UniProt ZFIN ENSEMBL Google Show fit	protein phosphatase 2, regulatory subunit B, beta a
chr23_+_25305431 Show fit	0.01	ENSDART00000143291	RPL41 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-151g10.6
chr12_-_2869565 Show fit	0.01	ENSDART00000152772	zdhhc16b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zinc finger, DHHC-type containing 16b
chr18_+_10820430 Show fit	0.00	ENSDART00000161990	mical3a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	microtubule associated monooxygenase, calponin and LIM domain containing 3a
chr8_-_13486258 Show fit	0.00	ENSDART00000137459	pimr104 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Pim proto-oncogene, serine/threonine kinase, related 104
chr14_+_36497250 Show fit	0.00	ENSDART00000184727	TENM3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-237h12.3
chr8_-_13419049 Show fit	0.00	ENSDART00000133656	pimr101 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Pim proto-oncogene, serine/threonine kinase, related 101

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.2	GO:0052576	carbohydrate localization(GO:0052575) carbohydrate storage(GO:0052576)
0.0	0.1	GO:0006145	purine nucleobase catabolic process(GO:0006145)
0.0	0.0	GO:0019062	virion attachment to host cell(GO:0019062) adhesion of symbiont to host(GO:0044406) adhesion of symbiont to host cell(GO:0044650)
0.0	0.1	GO:1901207	regulation of heart looping(GO:1901207)
0.0	0.0	GO:0015871	choline transport(GO:0015871)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.2	GO:0004645	phosphorylase activity(GO:0004645) glycogen phosphorylase activity(GO:0008184)
0.0	0.1	GO:0043140	ATP-dependent 3'-5' DNA helicase activity(GO:0043140) single-stranded DNA-dependent ATP-dependent 3'-5' DNA helicase activity(GO:1990518)
0.0	0.1	GO:0016725	oxidoreductase activity, acting on CH or CH2 groups(GO:0016725)
0.0	0.0	GO:0005006	epidermal growth factor-activated receptor activity(GO:0005006)
0.0	0.1	GO:0034648	histone demethylase activity (H3-dimethyl-K4 specific)(GO:0034648)
0.0	0.0	GO:0015220	choline transmembrane transporter activity(GO:0015220)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	REACTOME PURINE CATABOLISM	Genes involved in Purine catabolism