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PRJEB1986: zebrafish developmental stages transcriptome

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Results for prdm14

Z-value: 0.46

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Transcription factors associated with prdm14

Gene Symbol Gene ID Gene Info
prdm14
ENSDARG00000045371 PR domain containing 14

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
prdm14dr11_v1_chr24_+_14451404_14451404-0.409.3e-02Click!

Activity profile of prdm14 motif

Sorted Z-values of prdm14 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr16_-_24135508 1.21 ENSDART00000171819
ENSDART00000103176
bcam
basal cell adhesion molecule (Lutheran blood group)
chr21_-_14630831 1.06 ENSDART00000132142
ENSDART00000089967
cacna1bb
calcium channel, voltage-dependent, N type, alpha 1B subunit, b
chr10_+_573667 1.04 ENSDART00000110384
smad4a
SMAD family member 4a
chr12_+_39685485 0.91 ENSDART00000163403
LO017650.1

chr4_-_22207873 0.88 ENSDART00000142140
ppfia2
protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
chr21_+_44300689 0.88 ENSDART00000186298
ENSDART00000142810
gabra3
gamma-aminobutyric acid (GABA) A receptor, alpha 3
chr23_+_39558508 0.82 ENSDART00000017902
camk1gb
calcium/calmodulin-dependent protein kinase IGb
chr12_-_6818676 0.76 ENSDART00000106391
pcdh15b
protocadherin-related 15b
chr21_-_21089781 0.73 ENSDART00000144361
ank1b
ankyrin 1, erythrocytic b
chr25_-_1235457 0.73 ENSDART00000093093
coro2bb
coronin, actin binding protein, 2Bb
chr3_-_18675688 0.73 ENSDART00000048218
slc5a11
solute carrier family 5 (sodium/inositol cotransporter), member 11
chr5_-_69482891 0.71 ENSDART00000109487
CABZ01032476.1

chr10_-_33343244 0.70 ENSDART00000164191
c2cd2
C2 calcium-dependent domain containing 2
chr21_-_43949208 0.69 ENSDART00000150983
camk2a
calcium/calmodulin-dependent protein kinase II alpha
chr19_-_4851411 0.62 ENSDART00000110398
fbxl20
F-box and leucine-rich repeat protein 20
chr18_-_25646286 0.62 ENSDART00000099511
ENSDART00000186890
si:ch211-13k12.2
si:ch211-13k12.2
chr2_-_32826108 0.58 ENSDART00000098834
prpf4ba
pre-mRNA processing factor 4Ba
chr9_-_22281854 0.56 ENSDART00000146319
crygm2d3
crystallin, gamma M2d3
chr3_-_25268751 0.56 ENSDART00000139423
mgat3a
mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase a
chr5_+_26079178 0.54 ENSDART00000145920
si:dkey-201c13.2
si:dkey-201c13.2
chr18_+_44768829 0.52 ENSDART00000016271
ilvbl
ilvB (bacterial acetolactate synthase)-like
chr22_+_39074688 0.49 ENSDART00000153547
ip6k1
inositol hexakisphosphate kinase 1
chr17_+_12075805 0.48 ENSDART00000155329
cnsta
consortin, connexin sorting protein a
chr8_+_35172594 0.48 ENSDART00000177146
BX897670.1

chr20_-_51727860 0.47 ENSDART00000147044
brox
BRO1 domain and CAAX motif containing
chr17_+_25871304 0.47 ENSDART00000185143
wapla
WAPL cohesin release factor a
chr3_-_24456451 0.44 ENSDART00000024480
ENSDART00000156814
baiap2l2a
BAI1-associated protein 2-like 2a
chr5_-_67115872 0.41 ENSDART00000065262
rps6ka4
ribosomal protein S6 kinase, polypeptide 4
chr15_-_42760110 0.39 ENSDART00000152490
si:ch211-181d7.3
si:ch211-181d7.3
chr6_-_21988375 0.38 ENSDART00000161257
plxnb1b
plexin b1b
chr3_-_2593859 0.37 ENSDART00000143826
si:dkey-217f16.5
si:dkey-217f16.5
chr8_-_49285801 0.35 ENSDART00000113159
prickle3
prickle homolog 3
chr20_+_27020201 0.34 ENSDART00000126919
ENSDART00000016014
chga
chromogranin A
chr5_+_37903790 0.34 ENSDART00000162470
tmprss4b
transmembrane protease, serine 4b
chr12_-_36268723 0.34 ENSDART00000113740
kcnj16
potassium inwardly-rectifying channel, subfamily J, member 16
chr9_+_8364553 0.33 ENSDART00000190713
si:dkey-90l23.2
si:dkey-90l23.2
chr13_+_49727333 0.32 ENSDART00000168799
ENSDART00000037559
ggps1
geranylgeranyl diphosphate synthase 1
chr17_-_42492668 0.32 ENSDART00000183946
CR925755.2

chr1_+_46509176 0.32 ENSDART00000166028
mcf2la
mcf.2 cell line derived transforming sequence-like a
chr13_-_31544365 0.31 ENSDART00000005670
dhrs7
dehydrogenase/reductase (SDR family) member 7
chr14_-_30642819 0.27 ENSDART00000078154
npas4a
neuronal PAS domain protein 4a
chr17_+_27162367 0.26 ENSDART00000193345
rps6ka1
ribosomal protein S6 kinase a, polypeptide 1
chr25_-_8030425 0.25 ENSDART00000014964
camk1db
calcium/calmodulin-dependent protein kinase 1Db
chr7_+_16806473 0.24 ENSDART00000113332
ENSDART00000173541
nav2a
neuron navigator 2a
chr25_-_8030113 0.23 ENSDART00000104674
camk1db
calcium/calmodulin-dependent protein kinase 1Db
chr22_+_2680895 0.23 ENSDART00000082245
zgc:194221
zgc:194221
chr18_+_27926839 0.20 ENSDART00000191835
hipk3b
homeodomain interacting protein kinase 3b
chr7_+_13418812 0.20 ENSDART00000191905
ENSDART00000091567
dagla
diacylglycerol lipase, alpha
chr11_-_23080970 0.20 ENSDART00000127791
atp2b2
ATPase plasma membrane Ca2+ transporting 2
chr7_-_17780048 0.19 ENSDART00000183336
si:dkey-106g10.7
si:dkey-106g10.7
chr25_-_36248053 0.17 ENSDART00000134928
nfatc3b
nuclear factor of activated T cells 3b
chr16_-_26255877 0.17 ENSDART00000146214
erfl1
Ets2 repressor factor like 1
chr15_+_19293744 0.17 ENSDART00000184994
ENSDART00000123815
jam3a
junctional adhesion molecule 3a
chr25_+_9003230 0.16 ENSDART00000180330
ENSDART00000142917
rag1
recombination activating gene 1
chr6_+_518979 0.15 ENSDART00000151012
CACNA1I (1 of many)
si:ch73-379f7.5
chr5_-_57898008 0.15 ENSDART00000050945
layna
layilin a
chr11_-_18791834 0.15 ENSDART00000156431
pfkfb2b
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2b
chr24_+_26402110 0.14 ENSDART00000133684
si:ch211-230g15.5
si:ch211-230g15.5
chr12_-_4435303 0.13 ENSDART00000159007
si:ch211-173d10.1
si:ch211-173d10.1
chr9_+_33261330 0.12 ENSDART00000135384
usp9
ubiquitin specific peptidase 9
chr23_-_2448234 0.10 ENSDART00000082097
LO018513.1

chr2_-_36819624 0.07 ENSDART00000140844
slitrk3b
SLIT and NTRK-like family, member 3b
chr5_-_45877387 0.06 ENSDART00000183714
ENSDART00000041503
slc4a4a
solute carrier family 4 (sodium bicarbonate cotransporter), member 4a
chr4_-_49069087 0.06 ENSDART00000150622
si:ch211-234c11.3
si:ch211-234c11.3
chr7_+_51324834 0.06 ENSDART00000114429
usp12b
ubiquitin specific peptidase 12b
chr6_-_24384654 0.05 ENSDART00000164723
brdt
bromodomain, testis-specific
chr6_-_24143923 0.04 ENSDART00000157948
si:ch73-389b16.1
si:ch73-389b16.1
chr15_-_21837207 0.03 ENSDART00000089953
sik2b
salt-inducible kinase 2b
chr8_-_25566347 0.03 ENSDART00000138289
ENSDART00000078022
prex1
phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1
chr18_+_48793536 0.02 ENSDART00000168937
bmp16
bone morphogenetic protein 16
chr13_+_4871886 0.01 ENSDART00000132301
micu1
mitochondrial calcium uptake 1

Network of associatons between targets according to the STRING database.

First level regulatory network of prdm14

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.5 GO:0042998 positive regulation of Golgi to plasma membrane protein transport(GO:0042998) positive regulation of establishment of protein localization to plasma membrane(GO:0090004)
0.2 0.5 GO:0060623 regulation of chromosome condensation(GO:0060623)
0.1 0.5 GO:0006549 isoleucine metabolic process(GO:0006549) isoleucine biosynthetic process(GO:0009097)
0.1 0.8 GO:0045475 locomotor rhythm(GO:0045475)
0.1 0.3 GO:0090278 negative regulation of peptide secretion(GO:0002792) negative regulation of peptide hormone secretion(GO:0090278)
0.1 0.4 GO:0016572 histone phosphorylation(GO:0016572)
0.1 0.8 GO:0050962 detection of light stimulus involved in visual perception(GO:0050908) detection of light stimulus involved in sensory perception(GO:0050962)
0.1 0.3 GO:0060080 inhibitory postsynaptic potential(GO:0060080)
0.1 0.2 GO:0098920 endocannabinoid signaling pathway(GO:0071926) retrograde trans-synaptic signaling by lipid(GO:0098920) retrograde trans-synaptic signaling by endocannabinoid(GO:0098921)
0.0 0.4 GO:2000251 positive regulation of actin cytoskeleton reorganization(GO:2000251)
0.0 0.9 GO:0051932 synaptic transmission, GABAergic(GO:0051932)
0.0 0.6 GO:0006044 N-acetylglucosamine metabolic process(GO:0006044)
0.0 1.0 GO:0048264 determination of ventral identity(GO:0048264)
0.0 0.5 GO:0032958 inositol phosphate biosynthetic process(GO:0032958)
0.0 0.4 GO:1902285 semaphorin-plexin signaling pathway involved in neuron projection guidance(GO:1902285) semaphorin-plexin signaling pathway involved in axon guidance(GO:1902287)
0.0 0.1 GO:0001207 histone displacement(GO:0001207) regulation of transcription involved in meiotic cell cycle(GO:0051037) positive regulation of transcription involved in meiotic cell cycle(GO:0051039)
0.0 0.2 GO:0033151 V(D)J recombination(GO:0033151)
0.0 0.6 GO:0006368 transcription elongation from RNA polymerase II promoter(GO:0006368)
0.0 0.7 GO:0003146 heart jogging(GO:0003146)
0.0 0.2 GO:0033173 calcineurin-NFAT signaling cascade(GO:0033173)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.5 GO:0005948 acetolactate synthase complex(GO:0005948)
0.1 1.0 GO:0071144 SMAD2-SMAD3 protein complex(GO:0071144)
0.0 0.2 GO:0097519 DNA recombinase complex(GO:0097519)
0.0 0.8 GO:0032420 stereocilium(GO:0032420)
0.0 0.3 GO:0042583 chromaffin granule(GO:0042583)
0.0 0.9 GO:1902711 GABA receptor complex(GO:1902710) GABA-A receptor complex(GO:1902711)
0.0 0.4 GO:0002116 semaphorin receptor complex(GO:0002116)
0.0 1.1 GO:0005891 voltage-gated calcium channel complex(GO:0005891)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.5 GO:0003984 acetolactate synthase activity(GO:0003984)
0.1 0.7 GO:0005412 glucose:sodium symporter activity(GO:0005412)
0.1 0.5 GO:0071253 connexin binding(GO:0071253)
0.1 0.9 GO:0008503 benzodiazepine receptor activity(GO:0008503) GABA-gated chloride ion channel activity(GO:0022851)
0.1 0.7 GO:0030507 spectrin binding(GO:0030507)
0.1 1.0 GO:0070411 I-SMAD binding(GO:0070411)
0.0 2.0 GO:0004683 calmodulin-dependent protein kinase activity(GO:0004683)
0.0 0.2 GO:1990238 double-stranded DNA endodeoxyribonuclease activity(GO:1990238)
0.0 0.5 GO:0000828 inositol hexakisphosphate kinase activity(GO:0000828)
0.0 0.3 GO:0004711 ribosomal protein S6 kinase activity(GO:0004711)
0.0 0.2 GO:0004465 lipoprotein lipase activity(GO:0004465)
0.0 0.3 GO:0004659 prenyltransferase activity(GO:0004659)
0.0 1.1 GO:0005245 voltage-gated calcium channel activity(GO:0005245)
0.0 0.4 GO:0017154 semaphorin receptor activity(GO:0017154)
0.0 0.1 GO:0003873 6-phosphofructo-2-kinase activity(GO:0003873)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.7 ST WNT CA2 CYCLIC GMP PATHWAY Wnt/Ca2+/cyclic GMP signaling.
0.0 0.4 PID P38 ALPHA BETA DOWNSTREAM PATHWAY Signaling mediated by p38-alpha and p38-beta

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.7 REACTOME UNBLOCKING OF NMDA RECEPTOR GLUTAMATE BINDING AND ACTIVATION Genes involved in Unblocking of NMDA receptor, glutamate binding and activation
0.1 0.9 REACTOME GABA A RECEPTOR ACTIVATION Genes involved in GABA A receptor activation
0.0 0.7 REACTOME RECYCLING PATHWAY OF L1 Genes involved in Recycling pathway of L1
0.0 0.3 REACTOME INHIBITION OF VOLTAGE GATED CA2 CHANNELS VIA GBETA GAMMA SUBUNITS Genes involved in Inhibition of voltage gated Ca2+ channels via Gbeta/gamma subunits
0.0 0.3 REACTOME CHOLESTEROL BIOSYNTHESIS Genes involved in Cholesterol biosynthesis
0.0 0.2 REACTOME PLATELET CALCIUM HOMEOSTASIS Genes involved in Platelet calcium homeostasis